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Team:HKU-HKBU/speed control design
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[[Image:HKU-HKBU_speed_control_1.png | frame | center | Fig. 1 Genetic circuit related to cell movement [https://2008.igem.org/Team:iHKU/modeling iHKU]]] | [[Image:HKU-HKBU_speed_control_1.png | frame | center | Fig. 1 Genetic circuit related to cell movement [https://2008.igem.org/Team:iHKU/modeling iHKU]]] | ||
| - | + | To control the speed of our Bactomotor, we aim at the direct swimming of bacteria for propelling the motor and the adjustable speed of swimming within a certain range. The aim is achieved by regulation of the expression level of CheZ gene. CheZ plays the key role here is due to its influence on the expression of CheY. A high level of phosphorylation of CheY protein in ''E. coli'' or ''Salmonella''leads to the majority of bacteria tumbling movement, while a low level of phosphorylation of CheY protein in ''E. coli'' or ''Salmonella'' is found in non-tumbling bacteria and CheZ can function to reduce the level of phophorylated CheY in the bacteria. Therefore, when increasing the expression level of CheZ gene, we can reduce the tumbling movement, which in turn can increase the swimming speed of the bacteria to achieve the manipulation of speed. | |
| + | ==Step 1--CheZ knockout== | ||
This speed control system is constructed by knocking out the CheZ gene and transform an inducible plasmid with CheZ for the implement of adjustable control over the speed of the bacteria and hence the motor. There are two designs for this plasmid. | This speed control system is constructed by knocking out the CheZ gene and transform an inducible plasmid with CheZ for the implement of adjustable control over the speed of the bacteria and hence the motor. There are two designs for this plasmid. | ||
Revision as of 15:32, 14 October 2009
Contents |
Speed Control - Design
E. coli or Salmonella can swim around by the flagella rotating. When the flagella rotate counterclockwise, the bacteria form the forward motion which is called swimming. However, when the rotation is changed into clockwise, the bacteria tumble in place and are unable to swim (Fig 1).
To control the speed of our Bactomotor, we aim at the direct swimming of bacteria for propelling the motor and the adjustable speed of swimming within a certain range. The aim is achieved by regulation of the expression level of CheZ gene. CheZ plays the key role here is due to its influence on the expression of CheY. A high level of phosphorylation of CheY protein in E. coli or Salmonellaleads to the majority of bacteria tumbling movement, while a low level of phosphorylation of CheY protein in E. coli or Salmonella is found in non-tumbling bacteria and CheZ can function to reduce the level of phophorylated CheY in the bacteria. Therefore, when increasing the expression level of CheZ gene, we can reduce the tumbling movement, which in turn can increase the swimming speed of the bacteria to achieve the manipulation of speed.
Step 1--CheZ knockout
This speed control system is constructed by knocking out the CheZ gene and transform an inducible plasmid with CheZ for the implement of adjustable control over the speed of the bacteria and hence the motor. There are two designs for this plasmid.
First Design
The first design is to use lacI as a repressor to prevent any leaky expression in the absence of the inducer. The promoter in this construct is Plac, which can be induced by IPTG.
In the proposed model, by changing the concentration of IPTG, we would be able to change the level of expression of CheZ and therefore the swimming speed of the bacteria.
Second Design
The second design is to use tetR as a repressor and Ptet as the regulator, which can be induced by aTc.
We suppose that by changing the concentration of aTc, the expression amount of protein CheZ will be changed, which results in the alternation of the swimming speed.
