Team:BCCS-Bristol/Modeling/Mattia

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BCCS-Bristol
iGEM 2009

Last Year Bug Fixing:
- ~~New solution for reading gammaVals.txt (Old Problem: In Windows Vista semeed to be some reading problems)~~
- ~~Mathematic corrections in calcDistFromBoundary(Wrong Mathematics)~~
BSim 3D:
- Update Class BSimParticle r28 r51
  - ~~Class parameters~~
  - ~~Constructor~~
  - ~~setPosition~~
  - ~~setCentrePos~~
  - ~~setDirection~~
  - ~~normalise3DVector~~
- Update Class BSimChemicalField r29 r35
  - ~~Class parameters~~
  - ~~Constructor~~
  - ~~setAsLinear~~
  - ~~redraw~~
  - ~~updateField~~
  - Update Class BSimChemicalFieldThread
    - ~~Class parameters~~
    - ~~Constructor~~
    - ~~run~~
  - ~~addChemical~~
  - ~~getConcentration~~
  - ~~getField~~
- Update Class BSImBacterium r30 r50 r55
  - ~~iterateBacterium~~
  - iterateTumble
  - ~~startNewPhase~~
  - ~~doRun~~
- Update Class BSImBacteriaCreate r31 r48
  - ~~createBacteriaSet~~
  - ~~createBacterium~~
- Update Class BSimDeadBacterium r32
  - ~~runLogic~~
- Update Class BSimBeadsCreate r33
  - ~~createBeadSet~~
  - ~~createBead~~
- Update Class BSimChemicalFieldCreate r36
  - ~~createChemicalField~~
- Update Class BSimCollisionPhysics r37 r39 r46
  - ~~Class parameters~~
  - ~~updateProperties~~
  - Update Class BSimCollisionPhysicsThread
    - ~~run~~
    - ~~distBetweenPoints~~
    - ~~resolveExternalForces~~
    - ~~linearMotion~~
    - ~~force2Velocity3D~~
- Update Class BSimParameters r38 r41 r42 r58
  - ~~Class parameters~~
  - ~~createNewSolidBoxBoundariesVec~~
  - ~~createNewWrapBoxBoundariesVec~~
- Update Class BSimScene r40 r56
  - ~~resetScene~~
  - ~~runAllUpdates~~
- ~~New Class BSimPlaneBoundaryCreate~~ r43 r 54
- ~~New Class BSimSolidPlaneBoundary~~ r44 r49 r53
- Update Class BSimParametersLoader r47 r57
  - ~~processLine~~
- ~~New Class BSimWrapPlaneBoundary~~ r52
BSim Population Dynamics: