- Note: Our notebook is organized in a weekly fashion. Click on the Saturday of every week to view the notes from the previous week.
| May
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| M | T | W | T | F | S | S
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| [http://2009.igem.org/IllinoisTools/1_May_2009 1]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/2_May_2009&action=edit 2]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/3_May_2009&action=edit 3]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/4_May_2009&action=edit 4]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/5_May_2009&action=edit 5]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/6_May_2009&action=edit 6]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/7_May_2009&action=edit 7]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/8_May_2009&action=edit 8]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/9_May_2009&action=edit 9]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/10_May_2009&action=edit 10]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/11_May_2009&action=edit 11]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/12_May_2009&action=edit 12]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/13_May_2009&action=edit 13]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/14_May_2009&action=edit 14]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/15_May_2009&action=edit 15]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/16_May_2009&action=edit 16]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/17_May_2009&action=edit 17]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/18_May_2009&action=edit 18]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/19_May_2009&action=edit 19]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/20_May_2009&action=edit 20]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/21_May_2009&action=edit 21]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/22_May_2009&action=edit 22]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/23_May_2009&action=edit 23]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/24_May_2009&action=edit 24]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/25_May_2009&action=edit 25]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/26_May_2009&action=edit 26]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/27_May_2009&action=edit 27]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/28_May_2009&action=edit 28]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/29_May_2009&action=edit 29]
| [http://2009.igem.org/IllinoisTools/30_May_2009 30]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/31_May_2009&action=edit 31]
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| June
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| M | T | W | T | F | S | S
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/1_June_2009&action=edit 1]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/2_June_2009&action=edit 2]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/3_June_2009&action=edit 3]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/4_June_2009&action=edit 4]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/5_June_2009&action=edit 5]
| [http://2009.igem.org/IllinoisTools/6_June_2009 6]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/7_June_2009&action=edit 7]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/8_June_2009&action=edit 8]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/9_June_2009&action=edit 9]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/10_June_2009&action=edit 10]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/11_June_2009&action=edit 11]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/12_June_2009&action=edit 12]
| [http://2009.igem.org/IllinoisTools/13_June_2009 13]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/14_June_2009&action=edit 14]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/15_June_2009&action=edit 15]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/16_June_2009&action=edit 16]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/17_June_2009&action=edit 17]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/18_June_2009&action=edit 18]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/19_June_2009&action=edit 19]
| [http://2009.igem.org/IllinoisTools/20_June_2009 20]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/21_June_2009&action=edit 21]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/22_June_2009&action=edit 22]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/23_June_2009&action=edit 23]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/24_June_2009&action=edit 24]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/25_June_2009&action=edit 25]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/26_June_2009&action=edit 26]
| [http://2009.igem.org/IllinoisTools/27_June_2009 27]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/28_June_2009&action=edit 28]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/29_June_2009&action=edit 29]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/30_June_2009&action=edit 30]
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| July
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| M | T | W | T | F | S | S
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/1_July_2009&action=edit 1]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/2_July_2009&action=edit 2]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/3_July_2009&action=edit 3]
| [http://2009.igem.org/IllinoisTools/4_July_2009 4]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/5_July_2009&action=edit 5]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/6_July_2009&action=edit 6]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/7_July_2009&action=edit 7]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/8_July_2009&action=edit 8]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/9_July_2009&action=edit 9]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/10_July_2009&action=edit 10]
| [http://2009.igem.org/IllinoisTools/11_July_2009 11]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/12_July_2009&action=edit 12]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/13_July_2009&action=edit 13]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/14_July_2009&action=edit 14]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/15_July_2009&action=edit 15]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/16_July_2009&action=edit 16]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/17_July_2009&action=edit 17]
| [http://2009.igem.org/IllinoisTools/18_July_2009 18]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/19_July_2009&action=edit 19]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/20_July_2009&action=edit 20]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/21_July_2009&action=edit 21]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/22_July_2009&action=edit 22]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/23_July_2009&action=edit 23]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/24_July_2009&action=edit 24]
| [http://2009.igem.org/IllinoisTools/25_July_2009 25]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/26_July_2009&action=edit 26]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/27_July_2009&action=edit 27]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/28_July_2009&action=edit 28]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/29_July_2009&action=edit 29]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/30_July_2009&action=edit 30]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/31_July_2009&action=edit 31]
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| August
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| M | T | W | T | F | S | S
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| [http://2009.igem.org/IllinoisTools/1_August_2009 1]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/2_August_2009&action=edit 2]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/3_August_2009&action=edit 3]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/4_August_2009&action=edit 4]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/5_August_2009&action=edit 5]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/6_August_2009&action=edit 6]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/7_August_2009&action=edit 7]
| [http://2009.igem.org/IllinoisTools/8_August_2009 8]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/9_August_2009&action=edit 9]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/10_August_2009&action=edit 10]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/11_August_2009&action=edit 11]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/12_August_2009&action=edit 12]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/13_August_2009&action=edit 13]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/14_August_2009&action=edit 14]
| [http://2009.igem.org/IllinoisTools/15_August_2009 15]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/16_August_2009&action=edit 16]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/17_August_2009&action=edit 17]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/18_August_2009&action=edit 18]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/19_August_2009&action=edit 19]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/20_August_2009&action=edit 20]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/21_August_2009&action=edit 21]
| [http://2009.igem.org/IllinoisTools/22_August_2009 22]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/23_August_2009&action=edit 23]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/24_August_2009&action=edit 24]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/25_August_2009&action=edit 25]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/26_August_2009&action=edit 26]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/27_August_2009&action=edit 27]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/28_August_2009&action=edit 28]
| [http://2009.igem.org/IllinoisTools/29_August_2009 29]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/30_August_2009&action=edit 30]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/31_August_2009&action=edit 31]
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| September
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| M | T | W | T | F | S | S
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/1_September_2009&action=edit 1]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/2_September_2009&action=edit 2]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/3_September_2009&action=edit 3]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/4_September_2009&action=edit 4]
| [http://2009.igem.org/IllinoisTools/5_September_2009 5]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/6_September_2009&action=edit 6]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/7_September_2009&action=edit 7]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/8_September_2009&action=edit 8]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/9_September_2009&action=edit 9]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/10_September_2009&action=edit 10]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/11_September_2009&action=edit 11]
| [http://2009.igem.org/IllinoisTools/12_September_2009 12]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/13_September_2009&action=edit 13]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/14_September_2009&action=edit 14]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/15_September_2009&action=edit 15]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/16_September_2009&action=edit 16]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/17_September_2009&action=edit 17]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/18_September_2009&action=edit 18]
| [http://2009.igem.org/IllinoisTools/19_September_2009 19]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/20_September_2009&action=edit 20]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/21_September_2009&action=edit 21]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/22_September_2009&action=edit 22]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/23_September_2009&action=edit 23]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/24_September_2009&action=edit 24]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/25_September_2009&action=edit 25]
| [http://2009.igem.org/IllinoisTools/26_September_2009 26]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/27_September_2009&action=edit 27]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/28_September_2009&action=edit 28]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/29_September_2009&action=edit 29]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/30_September_2009&action=edit 30]
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| October
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| M | T | W | T | F | S | S
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/1_October_2009&action=edit 1]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/2_October_2009&action=edit 2]
| [http://2009.igem.org/IllinoisTools/3_October_2009 3]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/4_October_2009&action=edit 4]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/5_October_2009&action=edit 5]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/6_October_2009&action=edit 6]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/7_October_2009&action=edit 7]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/8_October_2009&action=edit 8]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/9_October_2009&action=edit 9]
| [http://2009.igem.org/IllinoisTools/10_October_2009 10]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/11_October_2009&action=edit 11]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/12_October_2009&action=edit 12]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/13_October_2009&action=edit 13]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/14_October_2009&action=edit 14]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/15_October_2009&action=edit 15]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/16_October_2009&action=edit 16]
| [http://2009.igem.org/IllinoisTools/17_October_2009 17]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/18_October_2009&action=edit 18]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/19_October_2009&action=edit 19]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/20_October_2009&action=edit 20]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/21_October_2009&action=edit 21]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/22_October_2009&action=edit 22]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/23_October_2009&action=edit 23]
| [http://2009.igem.org/IllinoisTools/24_October_2009 24]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/25_October_2009&action=edit 25]
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| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/26_October_2009&action=edit 26]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/27_October_2009&action=edit 27]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/28_October_2009&action=edit 28]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/29_October_2009&action=edit 29]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/30_October_2009&action=edit 30]
| [http://2009.igem.org/wiki/index.php?title=IllinoisTools/31_October_2009&action=edit 31]
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7/12-7/18
Donny
I modified the graph library to add room for additional weights. I also added search fields rather than drop down menus for selecting the desired compound.
Nate
This was also a very productive week. I was able to get a slew of programs written that I ended up combining to collect and organize data from the KEGG in ways that are most beneficial to our goals. Using this master program, I have assembled a few dictionaries that we can use for our web-tool. Here are the types of dictionaries I have made using my master program:
-Organism Enzymes to Genes (specify organism and enzyme, and it returns the gene)
-Enzymes to Organisms (specify enzyme, and it returns the organisms that the enzyme has genes in)
-Reactions to Enzymes (specify reaction, and it returns the enzymes that facilitate that reaction)
-Enzymes to Genes (specify enzyme, and it returns all genes that can encode that enzyme that are listed on KEGG)
The great thing about this master program is that it is super fast! Hurray for python! Also, I changed the colors for our wiki, and fixed it up a bit. Now it looks a lot better than before (as everybody liked the colors better this time around...).
Palak
This week I continued to populate the database with information from KEGG such as reaction reversibility, reactants, products, etc. I worked particularly long on creating a script to update reversibility because I ran into problem being able to check if it had been changed on the KEGG database.
Riyad
Finished up writing the program to blast a gene sequence against a file of BioBrick sequences
"
