From 2009.igem.org
This page shows results of BLAST with the [http://www.hgsc.bcm.tmc.edu/projects/microbial/microbial-detail.xsp?project_id=105 database of the DH10B genome]. In every case the nucleotide sequence was tried first, if the result was unclear the amino acid sequence was tried.
References
- [http://www.ncbi.nlm.nih.gov/nuccore/17530571 Plasmid R46] (Chen1997)
- [http://www.ncbi.nlm.nih.gov/nuccore/151856 Plasmid R773] (Chen1997, Lin2007-2)
ArsA
>gi|17530571:46163-47914 IncN plasmid R46, complete sequence
ATGAAATTCTTAGAGAATATCCCGTCTTACCTGTTTTTCACCGGTAAGGGAGGTGTAGGCAAAACTTCGA
TTTCCTGCGCAACGGCTATACGTCTGGCTGAACTGGGAAAGCGTGTTCTGCTTGTCAGTACCGACCCGGC
TTCCAATGTCGGTCAGGTATTCGATCAGACTATCGGTAACACTATCCAGCCCGTGACTGCTGTGTCTGGT
CTTTCGGCTCTGGAGATTGACCCGCAGGACGCCGCCCAGCAATACCGCGCCAGAATCGTTGACCCTATTA
TAGGTCTTTTGCCTGATGACGTTGTTAACAGCATCAGTGAACAGCTTTCAGGAGCTTGTACGACAGAGAT
CGCTGCATTCGACGAGTTTACTGGCTTACTGACTGACGCTTCTCTGCTGACCCGCTTTGATCACATCATT
TTTGATACTGCCCCAACTGGCCACACTATTCGCCTTCTTCAGCTTCCCGGAGCCTGGAGCAGCTTCATCG
AAAGTAACCCGGATGGTGCTTCCTGTCTTGGTCCAATGGCTGGGCTGGAAAAACAACGCGAGCAATATGC
TCATGCGGTTGAGGCATTATCCGATCCTGAACGAACTCGCCTTGTGCTGGTCGCGCGATTGCAAAAATCA
ACACTGCAGGAAGTCGCTCGTACTCATGACGAATTATCAGCTATTGGCCTTAAAAATCAGTATTTAGTCA
TTAACGGTGTCCTGCCTGCGAGCGAAGAGAAACGTGATGCACTGGCCGCTGCAATATGGCAACGGGAGCA
AGAGGCGCTGGCAAATCTTCCTGCCGGGTTATCTGATTTGCCGACAGACAACTTATACCTGCAGCCGCTG
AACATGGTTGGTGTATCCGCATTGAAAGGCCTGCTCAACGAACACGCTGAGATAACATCGCTTCCTGAAC
AAAGCCCACAGAACAAGCCAGAGAATATGTCGTTGTCTGTCCTGGTTGATGATATCGCCCGCAGTGAACA
CGGTTTGATTATGCTGATGGGCAAAGGTGGTGTGGGCAAAACCACAATGGCTGCGGCTATCGCCGTCAGT
CTGGCGGATAAGGGTTTTAATGTGCATCTCACCACCTCAGATCCTGCTGCACATCTCAGTACAACGCTCA
ATGGCAGCCTCAAAAATCTGCAGGTCAGCCGAATCAACCCTCACGATGAAACTGAACGCTATCGTCAGCA
TGTTCTTGAGACGAAAGGCAGGGATCTGGATGAGGCTGGGAAACGGCTGCTCGAAGAGGATTTACGTTCT
CCTTGCACAGAAGAGATTGCGGTGTTCCAGGCGTTTTCACGCGTAATTCGTGAAGCTGGCAAACGGTTTG
TGGTCATGGATACGGCACCTACCGGGCATACGCTATTACTGCTTGATGCTACCGGGGCTTATCACCGTGA
GATTGCCAGGAAGATGGGGGATAAAGGGCATTTTACCACTCCGATGATGCAGCTTCAGGACCAGGAACGT
ACCAAAGTTTTGCTGGTCACTCTGCCTGAAACCACACCTGTACTGGAAGCGGCAAACCTGCAGTCCGATC
TTGAACGTGCGGGGATTCATCCCTGGGGCTGGATTATCAATAACAGCCTTTGGATTGCACAGACGCAATC
GCCGCTGCTTTGCCAGCGCGCCCTACAAGAGCGTCCTCAAATCGAGGTTGTGAAAAACCAGCATGCAAGC
CGCATAGCGTTAGTACCGGTAATGGCTGCAGAGCCCACTGGCATCGAGAAACTCAGAGAGCTGGTTGTTT
AA
|
>Ecoli20030128.Contig192.fa
Length = 19353
Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 770 aagaggcgctggcaaatc 787
||||||||||||||||||
Sbjct: 19144 aagaggcgctggcaaatc 19161
|
>gi|151856:184-1935 Plasmid R773 arsenical resistance operon genes, arsA, arsB and arsC, complete cds
ATGCAATTCTTACAGAATATCCCCCCTTATCTGTTTTTTACGGGTAAAGGAGGCGTGGGTAAAACCTCTA
TTTCCTGCGCCACGGCGATCCGTCTGGCAGAACAGGGGAAACGGGTGCTGCTGGTCAGTACCGATCCGGC
CTCAAACGTAGGCCAGGTGTTTAGCCAGACGATTGGCATTACCATTCAGGCAATAGCCTCTGTTCCTGGA
TTGTCGGCTCTTGAGATTGATCCTCAGGCTGCTGCACAACAGTACCGGGCCAGAATCGTTGACCCTATTA
AAGGCGTCCTGCCTGATGACGTTGTTTCCAGCATCAACGAACAACTGTCAGGTGCATGCACAACAGAGAT
TGCGGCTTTTGATGAATTTACCGGATTACTGACAGATGCCTCTCTGCTGACGCGGTTTGACCATATCATT
TTTGATACCGCGCCGACGGGTCACACCATTCGCCTTCTGCAGTTGCCGGGCGCCTGGAGTAGCTTTATTG
ACAGCAATCCCGAGGGCGCGTCCTGTCTCGGCCCAATGGCGGGGCTGGAAAAGCAGCGTGAACAGTATGC
CTATGCTGTTGAAGCGTTGTCTGATCCAAAGCGTACCCGACTGGTATTAGTTGCTCGTCTGCAAAAATCC
ACGTTGCAGGAAGTCGCCCGGACTCATCTGGAACTTGCCGCCATCGGCCTTAAAAATCAGTACCTGGTTA
TTAATGGCGTTCTGCCCAAAACTGAAGCGGCAAACGATACACTGGCTGCTGCAATATGGGAGCGTGAACA
GGAGGCGCTGGCCAATCTTCCCGCTGATCTTGCAGGTTTGCCAACTGACACATTATTTCTCCAGCCGGTC
AATATGGTCGGTGTGTCTGCGCTCAGCAGGCTTCTCTCCACTCAGCCTGTAGCGTCGCCATCCTCGGATG
AATACCTGCAACAGCGGCCTGATATTCCGTCACTTTCTGCGTTGGTTGATGATATTGCCCGTAATGAACA
TGGCCTGATTATGCTGATGGGTAAAGGTGGCGTGGGGAAAACCACGATGGCTGCTGCCATTGCTGTCAGG
CTGGCCGACATGGGATTTGATGTCCATCTGACAACATCTGATCCTGCGGCGCATCTCAGCATGACCCTGA
ACGGTAGCCTTAACAACCTGCAGGTCAGCAGGATCGATCCTCACGAGGAAACGGAACGCTATCGTCAGCA
TGTTCTTGAAACAAAGGGAAAAGAACTGGACGAAGCGGGAAAACGCCTGCTGGAAGAGGACTTACGCTCA
CCTTGCACTGAGGAAATTGCTGTTTTCCAGGCCTTTTCACGGGTGATTCGTGAAGCGGGTAAACGTTTCG
TGGTGATGGATACGGCTCCGACCGGACACACGCTGTTGCTGCTGGATGCTACAGGCGCGTACCACCGCGA
AATTGCGAAGAAAATGGGAGAAAAAGGCCATTTCACCACACCGATGATGCTGCTTCAGGATCCGGAGCGC
ACTAAAGTGTTACTGGTCACGCTGCCGGAAACCACGCCCGTGCTTGAAGCGGCAAATTTACAGGCCGACC
TTGAGCGTGCAGGCATTCACCCCTGGGGCTGGATTATCAATAACAGCCTTTCCATTGCGGATACCCGTTC
GCCACTGCTTCGTATGCGGGCACAACAGGAACTTCCGCAGATAGAGAGCGTTAAACGCCAGCACGCCAGC
CGTGTCGCTCTTGTTCCCGTACTGGCGTCAGAACCAACCGGCATCGACAAACTCAAACAACTTGCTGGGT
AA
|
>Ecoli20030128.Contig569.fa
Length = 7803
Score = 34.2 bits (17), Expect = 0.44
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1668 ccagcacgccagccgtg 1684
|||||||||||||||||
Sbjct: 6734 ccagcacgccagccgtg 6718
|
ArsB
>gi|17530571:47964-49253 IncN plasmid R46, complete sequence
ATGTTACTGGCAGGCGCTATTTTTGTCCTGACCATCGTTTTGGTTATCTGGCAACCGAAGGGATTAGGGA
TCGGCTGGAGTGCGACGCTGGGCGCGGTACTGGCGCTGATCTCTGGCGTAGTCCATATTGGTGATATCCC
TGTAGTGTGGAATATTGTCTGGAATGCGACGGCGACCTTTATTGCCGTGATTATTATCAGCCTTCTGCTC
GATGAATCGGGCTTTTTCGAATGGGCGGCGCTGCACGTTTCACGTTGGGGTAACGGTCGCGGGCGTTTGC
TGTTTACCTATATCGTTTTGCTCGGCGCAGCGGTGGCGGCACTGTTTGCCAACGATGGTGCGGCATTGAT
TCTGACGCCAATTGTTATCGCCATGCTGCTTGCATTAGGTTTCAGCAAAGGCACTACGCTGGCATTTGTC
ATGGCCGCCGGGTTTATTGCCGATACGGCCAGTCTGCCGCTTATCGTGTCCAACCTGGTTAACATCGTTT
CTGCAGACTTCTTTGGGCTGGGTTTCACTGAGTATGCGTCGGTAATGGTGCCGGTGGATATCGCAGCCAT
TATCGCCACGCTGGTGATGCTGCATCTGTTCTTCCGCAAAGATATTCCGCCAACTTACGACCTGGCTCTC
CTGAAAGCACCGGCAAAAGCGATTAAAGATCTGGCAACCTTCAGAACCGGCTGGATAGTGTTGATCCTTC
TTCTGGTTGGCTTTTTCGTCCTTGAGCCGTTGGGTATCCCGGTCAGTGCGATTGCTGCTGTAGGGGCTGT
CATTCTGTTTGCGGTGGCGAATCGAGGCCATGCCATTAACACTGGCAAAGTGCTTCGCGGTGCGCCATGG
CAGATCGTCATATTCTCTCTGGGAATGTATCTGGTGGTCTATGGTCTGCGTAATGCCGGACTAACAGAAT
ACCTCTCCGGTGTGTTGAACGTGCTGGCAGATAAAGGACTTTGGGCCGCGACGTTTGGTACTGGCTTCCT
GACGGCTTTCCTCTCTTCCATCATGAACAATATGCCTACCGTGCTGGTTGGTGCTCTCTCTATTGATGGC
AGCACTGCAACAGGCGTTATCAAAGAGGCGATGATTTTTGCCAACGTGATTGGCTGCGATCTTGGACCGA
AAATTACACCTATTGGTAGCCTGGCAACGTTGCTCTGGCTGCATGTCCTTTCACAGAAGAACATGACCAT
CACATGGGGATACTATTTCCGCACCGGGATCGTCATGACTCTGCCTGTGCTGTTTGTAACGCTGGCCGCG
CTGGCGCTACGTCTCTCTTTCACTTTGTAA
|
>Ecoli20030128.Contig618.fa
Length = 9618
Score = 728 bits (367), Expect = 0.0
Identities = 1062/1291 (82%), Gaps = 2/1291 (0%)
Strand = Plus / Plus
Query: 1 atgttactggcaggcgctatttttgtcctgaccatcgttttggttatctggcaaccgaag 60
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 6043 atgttactggcaggcgctatctttgtcctgaccatcgtattggttatctggcagccgaaa 6102
Query: 61 ggattagggatcggctggagtgcgacgctgggcgcggtactggcgctgatctctggcgta 120
|| ||||| |||||||||||||| ||||| ||||| ||||||||| | | | |||||
Sbjct: 6103 ggtttaggcatcggctggagtgcaacgctcggcgcagtactggcgttagttacgggcgtg 6162
Query: 121 gtccatattggtgatatccctgtagtgtggaatattgtctggaatgcgacggcgaccttt 180
|||||| |||||||| || || ||||||||||| |||||||| |||||||| | |||
Sbjct: 6163 gtccatccgggtgatattccggtggtgtggaatatcgtctggaacgcgacggctgcgttt 6222
Query: 181 attgccgtgattattatcagccttctgctcgatgaatcgggctttttcgaatgggcggcg 240
|| ||||| ||||| |||||||| ||||| ||||| || |||||||| ||||||||||||
Sbjct: 6223 atcgccgtcattatcatcagcctgctgctggatgagtccggcttttttgaatgggcggcg 6282
Query: 241 ctgcacgtttcacgttggggtaacggtcgcgggcgtttgctgtttacctatatcgttttg 300
|||||||| ||||| |||||||| ||||| || || ||||||||||||| || || ||
Sbjct: 6283 ctgcacgtctcacgctggggtaatggtcgtggtcgcttgctgtttacctggattgtcctg 6342
Query: 301 ctcggcgcagcggtggcggcactgtttgccaacgatggtgcggcattgattctgacgcca 360
||||| || || || || || ||||||||||| ||||| ||||| | ||| |||| ||
Sbjct: 6343 ctcggtgctgccgttgccgccctgtttgccaatgatggcgcggcgcttattttgacaccg 6402
Query: 361 attgttatcgccatgctgcttgcattaggtttcagcaaaggcactacgctggcatttgtc 420
||||| |||||||||||||| || ||||| ||||| ||||||||||||||||| || ||
Sbjct: 6403 attgtcatcgccatgctgctggctttagggttcagtaaaggcactacgctggcgttcgtg 6462
Query: 421 atggccgccgggtttattgccgatacggccagtctgccgcttatcgtgtccaacctggtt 480
||||| ||||| || ||||||||||| ||||| ||||||||||| || |||||||||||
Sbjct: 6463 atggcggccggattcattgccgataccgccagcctgccgcttattgtctccaacctggtg 6522
Query: 481 aacatcgtttctgcagacttctttgggctggg-tttcactgagtatgcgtcggtaatggt 539
|| |||||||| || || |||||||| || || |||| | || || || ||||| |||||
Sbjct: 6523 aatatcgtttccgctgatttctttggcctcggctttcgc-gaatacgcctcggtgatggt 6581
Query: 540 gccggtggatatcgcagccattatcgccacgctggtgatgctgcatctgttcttccgcaa 599
||||||||||||||| || ||| | ||||||||||||||| | ||||| | || |||||
Sbjct: 6582 gccggtggatatcgccgcgattgttgccacgctggtgatgttacatctctattttcgcaa 6641
Query: 600 agatattccgccaacttacgacctggctctcctgaaagcaccggcaaaagcgattaaaga 659
||||||||||| | ||||| |||| || |||||| | || ||| ||||||| |||||
Sbjct: 6642 agatattccgcagaactacgatatggcgctgctgaaatctcccgcagaagcgatcaaaga 6701
Query: 660 tctggcaaccttcagaaccggctggatagtgttgatccttcttctggttggctttttcgt 719
|| || || |||| ||| |||||| | || || | ||||| ||||| || ||||||||
Sbjct: 6702 tcctgctacgttcaaaactggctgggttgttttactgcttctgctggtgggatttttcgt 6761
Query: 720 ccttgagccgttgggtatcccggtcagtgcgattgctgctgtaggggctgtcattctgtt 779
||| || ||| | || || ||||| || || ||||| ||||| || || | || | ||
Sbjct: 6762 cctggaaccgctcggcattccggtgagcgccattgcagctgtgggcgcgctgatattatt 6821
Query: 780 tgcggtggcgaatcgaggccatgccattaacactggcaaagtgcttcgcggtgcgccatg 839
|| || || || || || ||||| ||||| || || ||||| || |||||||| || ||
Sbjct: 6822 tgtcgtcgctaaacgcggtcatgcgattaatacgggtaaagtcctgcgcggtgccccctg 6881
Query: 840 gcagatcgtcatattctctctgggaatgtatctggtggtctatggtctgcgtaatgccgg 899
|||||| ||||| ||||| || || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 6882 gcagattgtcatcttctcgctcggcatgtatctggtggtttatggcctgcgcaatgccgg 6941
Query: 900 actaacagaatacctctccggtgtgttgaacgtgctggcagataaaggactttgggccgc 959
| |||| ||||| || || || || | ||||||||||| ||||| || || ||||||||
Sbjct: 6942 attaacggaatatctttctggcgtactcaacgtgctggcggataacggcctgtgggccgc 7001
Query: 960 gacgtttggtactggcttcctgacggctttcctctcttccatcatgaacaatatgcctac 1019
|||| | || || || ||||| || || ||||||||||| || |||||||||||||| ||
Sbjct: 7002 gacgctcggcaccggattcctcaccgccttcctctcttctattatgaacaatatgccgac 7061
Query: 1020 cgtgctggttggtgctctctctattgatggcagcactgcaacaggcgttatcaaagaggc 1079
|| |||||||| || | || |||||||||||||| ||| | |||||||||||||| ||
Sbjct: 7062 ggtactggttggcgcgttgtccattgatggcagcacggcatctggcgttatcaaagaagc 7121
Query: 1080 gatgatttttgccaacgtgattggctgcgatcttggaccgaaaattacacctattggtag 1139
|||| ||| |||||| ||||||||||||||| | |||||||||||||| || ||||||||
Sbjct: 7122 gatggtttatgccaatgtgattggctgcgatttgggaccgaaaattaccccaattggtag 7181
Query: 1140 cctggcaacgttgctctggctgcatgtcctttcacagaagaacatgaccatcacatgggg 1199
|||||| ||| | ||||||||||| || ||||| |||||||| ||||| |||| |||||
Sbjct: 7182 cctggctacgctactctggctgcacgtactttcgcagaagaatatgactatcagctgggg 7241
Query: 1200 atactatttccgcaccgggatcgtcatgactctgcctgtgctgtttgtaacgctggccgc 1259
||| || ||||| || ||||| ||||||| ||||||||||||||||| |||||||| ||
Sbjct: 7242 atattacttccgtacagggattatcatgaccctgcctgtgctgtttgtgacgctggctgc 7301
Query: 1260 gctggcgctacgtctctctttcactttgtaa 1290
|||||||||||||||||||||||||||||||
Sbjct: 7302 gctggcgctacgtctctctttcactttgtaa 7332
|
>gi|151856:1984-3273 Plasmid R773 arsenical resistance operon genes, arsA, arsB and arsC, complete cds
ATGTTACTGGCAGGAGCCATTTTTATCCTGACCATCGTTTTGGTTATCTGGCAGCCGAAAGGATTAGGGA
TTGGCTGGAGCGCCACGTTGGGGGCTGTACTGGCTCTGGCGTCGGGTGTGATACACATTGCTGATATTCC
GGTGGTGTGGAATATTGTCTGGAACGCGACGGCAACATTTATCGCCGTTATTATCATCAGCCTGTTGCTG
GATGAGTCAGGCTTTTTCGAATGGGCAGCGTTGCACGTTTCTCGCTGGGGGAACGGTCGTGGCCGCCTGC
TGTTTACGTATATTGTTCTGCTCGGCGCGGCAGTGGCGGCACTGTTTGCCAACGATGGTGCGGCTCTTAT
TCTGACGCCGATTGTTATCGCCATGCTGCTGGCGCTTGGCTTCAGTAAAAGCACCACACTGGCATTCGTG
ATGGCTGCCGGGTTTATTTCCGATACTGCTAGCTTGCCGCTTATCGTATCGAACTTGGTCAATATCGTTT
CAGCTGATTTCTTCAAACTGGGATTCACGGAGTATGCTTCGGTGATGGTGCCGGTGGATATCGCCGCCAT
TATCGCCACGCTGGTGATGCTGCATCTTTTTTTCCGCAAAGATATCCCCCCCACTTATGAGCTGGCGCGA
CTGAAAGAACCTGCAAAAGCCATCAAAGATCCTGCGACGTTCAGAACCGGCTGGGTTGTTCTCCTCCTTC
TGCTGGTCGGTTTTTTTGTCCTTGAGCCGATGGGGATCCCTGTGAGTGCGATTGCAGCAGTGGGGGCGGC
AGTCCTGTTTGCGGTGGCCAAAAAAGGTCATGGTATTAACACCGGTAAAGTGCTGCGCGGCGCGCCCTGG
CAGATCGTGATCTTCTCTCTGGGGATGTATCTGGTGATCTACGGGTTGCGTAACGCCGGTCTGACAGATT
ATCTCTCTGACGTGCTGAACGAACTGGCAGATAAAGGACTGTGGGCCGCCACGCTGGGGACGGGATTCCT
GACAGCATTACTCTCTTCTATTATGAACAATATGCCGACAGTATTGATTGGCGCATTGTCAATTGATGGC
AGCACCGCGACCGGTGTTATCAAAGAGGCGATGATTTATGCCAACGTCATTGGCTGCGATCTGGGGCCGA
AAATCACCCCTATTGGTAGCCTGGCAACACTGCTCTGGCTGCATGTACTTTCACAGAAGAACATGACCAT
CACTTGGGGATACTATTTCCGCACCGGGATCGTCATGACTCTGCCTGTGCTGTTTGTAACGCTGGCCGCG
CTGGCGCTACGTCTCTCTGTCACATTGTAA
|
>Ecoli20030128.Contig618.fa
Length = 9618
Score = 355 bits (179), Expect = 7e-98
Identities = 416/495 (84%)
Strand = Plus / Plus
Query: 796 ggtcatggtattaacaccggtaaagtgctgcgcggcgcgccctggcagatcgtgatcttc 855
||||||| ||||| || |||||||| |||||||| || ||||||||||| || ||||||
Sbjct: 6838 ggtcatgcgattaatacgggtaaagtcctgcgcggtgccccctggcagattgtcatcttc 6897
Query: 856 tctctggggatgtatctggtgatctacgggttgcgtaacgccggtctgacagattatctc 915
|| || || |||||||||||| | || || |||| || ||||| | || || |||||
Sbjct: 6898 tcgctcggcatgtatctggtggtttatggcctgcgcaatgccggattaacggaatatctt 6957
Query: 916 tctgacgtgctgaacgaactggcagataaaggactgtgggccgccacgctggggacggga 975
|||| ||| || |||| ||||| ||||| || ||||||||||| ||||| || || |||
Sbjct: 6958 tctggcgtactcaacgtgctggcggataacggcctgtgggccgcgacgctcggcaccgga 7017
Query: 976 ttcctgacagcattactctcttctattatgaacaatatgccgacagtattgattggcgca 1035
||||| || || || ||||||||||||||||||||||||||||| ||| || |||||||
Sbjct: 7018 ttcctcaccgccttcctctcttctattatgaacaatatgccgacggtactggttggcgcg 7077
Query: 1036 ttgtcaattgatggcagcaccgcgaccggtgttatcaaagaggcgatgatttatgccaac 1095
||||| |||||||||||||| || | || ||||||||||| |||||| ||||||||||
Sbjct: 7078 ttgtccattgatggcagcacggcatctggcgttatcaaagaagcgatggtttatgccaat 7137
Query: 1096 gtcattggctgcgatctggggccgaaaatcacccctattggtagcctggcaacactgctc 1155
|| |||||||||||| |||| |||||||| ||||| |||||||||||||| || || |||
Sbjct: 7138 gtgattggctgcgatttgggaccgaaaattaccccaattggtagcctggctacgctactc 7197
Query: 1156 tggctgcatgtactttcacagaagaacatgaccatcacttggggatactatttccgcacc 1215
|||||||| |||||||| |||||||| ||||| |||| |||||||| || ||||| ||
Sbjct: 7198 tggctgcacgtactttcgcagaagaatatgactatcagctggggatattacttccgtaca 7257
Query: 1216 gggatcgtcatgactctgcctgtgctgtttgtaacgctggccgcgctggcgctacgtctc 1275
||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 7258 gggattatcatgaccctgcctgtgctgtttgtgacgctggctgcgctggcgctacgtctc 7317
Query: 1276 tctgtcacattgtaa 1290
||| |||| ||||||
Sbjct: 7318 tctttcactttgtaa 7332
|
>gi|151858|gb|AAA21095.1| ArsB [Plasmid R773]
MLLAGAIFILTIVLVIWQPKGLGIGWSATLGAVLALASGVIHIADIPVVWNIVWNATATFIAVIIISLLL
DESGFFEWAALHVSRWGNGRGRLLFTYIVLLGAAVAALFANDGAALILTPIVIAMLLALGFSKSTTLAFV
MAAGFISDTASLPLIVSNLVNIVSADFFKLGFTEYASVMVPVDIAAIIATLVMLHLFFRKDIPPTYELAR
LKEPAKAIKDPATFRTGWVVLLLLLVGFFVLEPMGIPVSAIAAVGAAVLFAVAKKGHGINTGKVLRGAPW
QIVIFSLGMYLVIYGLRNAGLTDYLSDVLNELADKGLWAATLGTGFLTALLSSIMNNMPTVLIGALSIDG
STATGVIKEAMIYANVIGCDLGPKITPIGSLATLLWLHVLSQKNMTITWGYYFRTGIVMTLPVLFVTLAA
LALRLSVTL
|
>Ecoli20030128.Contig618.fa
Length = 9618
Score = 637 bits (1644), Expect = 0.0
Identities = 330/429 (76%), Positives = 350/429 (81%)
Frame = +1
Query: 1 MLLAGAIFILTIVLVIWQPKGLGIGWSATLGAVLALASGVIHIADIPVVWNIVWNATATF 60
MLLAGAIF+LTIVLVIWQPKGLGIGWSATLGAVLAL +GV+H DIPVVWNIVWNATA F
Sbjct: 6043 MLLAGAIFVLTIVLVIWQPKGLGIGWSATLGAVLALVTGVVHPGDIPVVWNIVWNATAAF 6222
Query: 61 IAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFTYIXXXXXXXXXXXXXXXXXXILTP 120
IAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFT+I ILTP
Sbjct: 6223 IAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFTWIVLLGAAVAALFANDGAALILTP 6402
Query: 121 IVIAMLLALGFSKSTTLAFVMAAGFISDTASLPLIVSNLVNIVSADFFKLGFTEYASVMV 180
IVIAMLLALGFSK TTLAFVMAAGFI+DTASLPLIVSNLVNIVSADFF LGF EYASVMV
Sbjct: 6403 IVIAMLLALGFSKGTTLAFVMAAGFIADTASLPLIVSNLVNIVSADFFGLGFREYASVMV 6582
Query: 181 PVDIAAIIATLVMLHLFFRKDIPPTYELARLKEPAKAIKDPATFRTGWXXXXXXXXXXXX 240
PVDIAAI+ATLVMLHL+FRKDIP Y++A LK PA+AIKDPATF+TGW
Sbjct: 6583 PVDIAAIVATLVMLHLYFRKDIPQNYDMALLKSPAEAIKDPATFKTGWVVLLLLLVGFFV 6762
Query: 241 XEPMGIPXXXXXXXXXXXXXXXXKKGHGINTGKVLRGAPWQIVIFSLGMYLVIYGLRNAG 300
EP+GIP K+GH INTGKVLRGAPWQIVIFSLGMYLV+YGLRNAG
Sbjct: 6763 LEPLGIPVSAIAAVGALILFVVAKRGHAINTGKVLRGAPWQIVIFSLGMYLVVYGLRNAG 6942
Query: 301 LTDYLSDVLNELADKXXXXXXXXXXXXXXXXSSIMNNMPTVLIGALSIDGSTATGVIKEA 360
LT+YLS VLN LAD SSIMNNMPTVL+GALSIDGSTA+GVIKEA
Sbjct: 6943 LTEYLSGVLNVLADNGLWAATLGTGFLTAFLSSIMNNMPTVLVGALSIDGSTASGVIKEA 7122
Query: 361 MIYANVIGCDLGPKITPIGSLATLLWLHVLSQKNMTITWGYYFRTGIVMTLPVLFVTLAA 420
M+YANVIGCDLGPKITPIGSLATLLWLHVLSQKNMTI+WGYYFRTGI+MTLPVLFVTLAA
Sbjct: 7123 MVYANVIGCDLGPKITPIGSLATLLWLHVLSQKNMTISWGYYFRTGIIMTLPVLFVTLAA 7302
Query: 421 LALRLSVTL 429
LALRLS TL
Sbjct: 7303 LALRLSFTL 7329
|
ArsC
>gi|17530571:49266-49691 IncN plasmid R46, complete sequence
ATGAGCAACATCACCATTTATCACAACCCACACTGCGGCACGTCGCGTAATACGCTGGAGATGATCCGCA
ACAGCGGTATCGAGCCGACCGTTATTCTTTACCTTGAGACTCCACCTTCACGCGATGAGCTGCTCAAACT
CATTGCGGATATGGGCATTTCCGTCCGGGCTTTGCTGCGTAAGAACGTCGAGCCGTATGAGGAACTGGGT
CTTGCAGAAGATAAATTTACTGACGACCAGCTCATCGACTTTATGCTACAGCATCCGATTCTGATCAACC
GTCCGATCGTAGTGACGCCACTGGGAACTAAACTTTGCCGTCCTTCAGAGGTTGTTCTCGATATCCTTCC
AGATGCCCAGAAAGCGGCTTTCACCAAGGAAGACGGTGAAAAAGTCGTTGATGATTCAGGTAAAAGACTG
AAATAA
|
>Ecoli20030128.Contig618.fa
Length = 9618
Score = 278 bits (140), Expect = 4e-75
Identities = 338/404 (83%)
Strand = Plus / Plus
Query: 1 atgagcaacatcaccatttatcacaacccacactgcggcacgtcgcgtaatacgctggag 60
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7345 atgagcaacattaccatttatcacaacccggcctgcggcacgtcgcgtaatacgctggag 7404
Query: 61 atgatccgcaacagcggtatcgagccgaccgttattctttaccttgagactccaccttca 120
||||||||||||||||| | || ||||| |||| | ||| || || ||||| || |
Sbjct: 7405 atgatccgcaacagcggcacagaaccgactattatccattatctggaaactccgccaacg 7464
Query: 121 cgcgatgagctgctcaaactcattgcggatatgggcatttccgtccgggctttgctgcgt 180
|||||||| ||| ||||||||||||| |||||||| |||||||| || || ||||||||
Sbjct: 7465 cgcgatgaactggtcaaactcattgccgatatggggatttccgtacgcgcgctgctgcgt 7524
Query: 181 aagaacgtcgagccgtatgaggaactgggtcttgcagaagataaatttactgacgaccag 240
|| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| | |
Sbjct: 7525 aaaaacgtcgaaccgtatgaggagctgggccttgcggaagataaatttactgacgatcgg 7584
Query: 241 ctcatcgactttatgctacagcatccgattctgatcaaccgtccgatcgtagtgacgcca 300
| |||||||||||||| ||||| ||||||||||| || || ||||| || ||||||||
Sbjct: 7585 ttaatcgactttatgcttcagcacccgattctgattaatcgcccgattgtggtgacgccg 7644
Query: 301 ctgggaactaaactttgccgtccttcagaggttgttctcgatatccttccagatgcccag 360
||||||||| || ||||| |||||||| || || || || || || |||||||| ||
Sbjct: 7645 ctgggaactcgcctgtgccgcccttcagaagtggtgctggaaattctgccagatgcgcaa 7704
Query: 361 aaagcggctttcaccaaggaagacggtgaaaaagtcgttgatga 404
|||| || ||| |||||||||| || || ||||| ||||||||
Sbjct: 7705 aaaggcgcattctccaaggaagatggcgagaaagtggttgatga 7748
|
>gi|151856:3286-3711 Plasmid R773 arsenical resistance operon genes, arsA, arsB and arsC, complete cds
ATGAGCAACATCACTATTTATCATAACCCAGCCTGCGGCACCTCGCGTAATACGCTGGAGATGATCCGCA
ACAGCGGTACCGAGCCGACCATTATTCTTTACCTTGAAAACCCGCCTTCGAGGGATGAGCTGGTTAAACT
TATTGCCGATATGGGTATTTCAGTACGAGCGCTGCTGCGTAAAAACGTTGAACCTTACGAGCAACTGGGT
CTTGCAGAAGATAAATTTACTGACGATCAGCTCATCGACTTTATGTTGCAACACCCAATTCTGATTAACC
GTCCGATCGTGGTTACGCCGCTGGGAACCAGACTGTGCCGTCCTTCTGAAGTGGTTCTGGATATCCTACA
GGATGCGCAGAAAGGGGCTTTCACTAAGGAAGACGGTGAAAAAGTCGTTGATGAAGCAGGAAAACGGCTG
AAATAA
|
>Ecoli20030128.Contig618.fa
Length = 9618
Score = 313 bits (158), Expect = 8e-86
Identities = 359/426 (84%)
Strand = Plus / Plus
Query: 1 atgagcaacatcactatttatcataacccagcctgcggcacctcgcgtaatacgctggag 60
||||||||||| || |||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct: 7345 atgagcaacattaccatttatcacaacccggcctgcggcacgtcgcgtaatacgctggag 7404
Query: 61 atgatccgcaacagcggtaccgagccgaccattattctttaccttgaaaacccgccttcg 120
||||||||||||||||| || || ||||| ||||| | ||| || |||| ||||| ||
Sbjct: 7405 atgatccgcaacagcggcacagaaccgactattatccattatctggaaactccgccaacg 7464
Query: 121 agggatgagctggttaaacttattgccgatatgggtatttcagtacgagcgctgctgcgt 180
| ||||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 7465 cgcgatgaactggtcaaactcattgccgatatggggatttccgtacgcgcgctgctgcgt 7524
Query: 181 aaaaacgttgaaccttacgagcaactgggtcttgcagaagataaatttactgacgatcag 240
|||||||| ||||| || ||| | ||||| ||||| |||||||||||||||||||||| |
Sbjct: 7525 aaaaacgtcgaaccgtatgaggagctgggccttgcggaagataaatttactgacgatcgg 7584
Query: 241 ctcatcgactttatgttgcaacacccaattctgattaaccgtccgatcgtggttacgccg 300
| |||||||||||| | || ||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 7585 ttaatcgactttatgcttcagcacccgattctgattaatcgcccgattgtggtgacgccg 7644
Query: 301 ctgggaaccagactgtgccgtccttctgaagtggttctggatatcctacaggatgcgcag 360
|||||||| | |||||||| ||||| |||||||| ||||| || || | ||||||||
Sbjct: 7645 ctgggaactcgcctgtgccgcccttcagaagtggtgctggaaattctgccagatgcgcaa 7704
Query: 361 aaaggggctttcactaaggaagacggtgaaaaagtcgttgatgaagcaggaaaacggctg 420
||||| || ||| | |||||||| || || ||||| ||||||||||| || || || |||
Sbjct: 7705 aaaggcgcattctccaaggaagatggcgagaaagtggttgatgaagcgggtaagcgcctg 7764
Query: 421 aaataa 426
||||||
Sbjct: 7765 aaataa 7770
|
ArsD
>gi|17530571:45783-46145 IncN plasmid R46, complete sequence
ATGAAAATGTTAACGGTGTTTGATCCGGCGATGTGCTGCAGTACCGGCGTTTGTGGTTCAGATGTCGATC
AGGTTTTGGTCAATTTTTCTGCTGATGTGCAATGGCTGAAAGGGCGTGGGGTTCAGATCGAACGTTATAA
CCTGGCGCACGAGCCTATGAGCTTCGTTGAGAACGAAAAAGCGAAAGCATTCCTTGAGGCTTCTGGAGCT
GAAGGGCTTCCGCTGCTGTTGCTTGATGGTGAAACGGTGATGGCCGGGCGATACCCAAAACGCGCTGAAC
TGGCTCGCTGGTTTGGTATACCGCTGGAAAAGGTGGGTTTAGCTTCCACCAGTTGCTGTGGTGGTAAAAC
TTCCTGTTGTTGA
|
>Ecoli20030128.Contig445.fa
Length = 22106
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 50 tttgtggttcagatgt 65
||||||||||||||||
Sbjct: 6396 tttgtggttcagatgt 6411
|
ArsR
>gi|17530571:45382-45735 IncN plasmid R46, complete sequence
ATGCCAGAAATTGCATCCCTACAACTTTTCAAAATACTATCTGATGAAACCCGCCTGGGTATCGTGCTAC
TGCTCAGGGAGATGGGGGAGCTGTGCGTATGCGATCTCTGCACAGCGCTGGAACAATCACAACCCAAGAC
CTCCCGCCATCTGGCGATGCTTCGGGAAAGTGGCCTGTTGCTGGATCGCAAGCAGGGGAAATGGGTTCAT
TATCGCTTATCCCCGCATATTCCTTCCTGGGCTGCCCTGGTGATTGAGCAGGCCTGGTTAAGTCAACAGG
ACGACGTACAGGCCATCGCCCGTAAGCTGGCATCGGCCAACTGCTCTGGCAGCGGTAAGGCTGTTTGTAT
CTAA
|
>Ecoli20030128.Contig618.fa
Length = 9618
Score = 117 bits (59), Expect = 7e-27
Identities = 171/207 (82%), Gaps = 1/207 (0%)
Strand = Plus / Plus
Query: 28 ttcaaaatactatctgatgaaacccgcctgggtatcgtgctactgctcagggagatgggg 87
|||||||| || ||||||||||||| ||||| ||||| |||||||||| || ||||
Sbjct: 5662 ttcaaaattcttgctgatgaaacccgtctgggcatcgttttactgctcagcgaactggga 5721
Query: 88 gagctgtgcgtatgcgatctctgcacagcgctggaacaatcacaacccaagacctcccgc 147
||| | ||||| |||||||||||||| || || || || || || ||||||| |||||||
Sbjct: 5722 gagttatgcgtctgcgatctctgcactgctctcgaccagtcgcagcccaagatctcccgc 5781
Query: 148 catctggcgatgcttcgggaaagtggcctgttgctggatcgcaagcaggggaaa-tgggt 206
|| ||||| |||| || ||||| || || |||||||| |||||||| || ||| |||||
Sbjct: 5782 cacctggcattgctgcgtgaaagcgggctattgctggaccgcaagcaaggtaaagtgggt 5841
Query: 207 tcattatcgcttatccccgcatattcc 233
|||||| |||||||| |||||||||||
Sbjct: 5842 tcattaccgcttatcaccgcatattcc 5868
|
>gi|17530578|ref|NP_511236.1| DNA-binding transcriptional repressor ArsR [IncN plasmid R46]
MPEIASLQLFKILSDETRLGIVLLLREMGELCVCDLCTALEQSQPKTSRHLAMLRESGLLLDRKQGKWVH
YRLSPHIPSWAALVIEQAWLSQQDDVQAIARKLASANCSGSGKAVCI
|
>Ecoli20030128.Contig618.fa
Length = 9618
Score = 112 bits (280), Expect(2) = 9e-44
Identities = 55/67 (82%), Positives = 61/67 (91%)
Frame = +1
Query: 1 MPEIASLQLFKILSDETRLGIVLLLREMGELCVCDLCTALEQSQPKTSRHLAMLRESGLL 60
M + +QLFKIL+DETRLGIVLLL E+GELCVCDLCTAL+QSQPK SRHLA+LRESGLL
Sbjct: 5635 MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQPKISRHLALLRESGLL 5814
Query: 61 LDRKQGK 67
LDRKQGK
Sbjct: 5815 LDRKQGK 5835
|
"
