Team:Alberta/References/Keyword

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     <h1>References</h1>
     <h1>References</h1>
-
<b>NEED TO PROPERLY FORMAT REFERENCES</b>
 
-
 
<h2>Bioinformatics</h2>
<h2>Bioinformatics</h2>
<p>
<p>
-
BioWarehouse: a bioinformatics database warehouse toolkit Lee (2006)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/BioWarehouse: a bioinformatics database warehouse toolkit" target="_blank">BioWarehouse: a bioinformatics database warehouse toolkit</a>
 +
Lee (2006)
</p>
</p>
<p>
<p>
-
Triad pattern algorithms for predicting strong promoter candidates in bacterial genomes Dekhtyar (2008)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Triad pattern algorithms for predicting strong promoter candidates in bacterial genomes" target="_blank">Triad pattern algorithms for predicting strong promoter candidates in bacterial genomes</a>
 +
Dekhtyar (2008)
</p>
</p>
<p>
<p>
-
Vector NTI, a balanced all-in-one sequence analysis suite Lu (2004)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Vector NTI, a balanced all-in-one sequence analysis suite" target="_blank">Vector NTI, a balanced all-in-one sequence analysis suite</a>
 +
Lu (2004)
</p>
</p>
<p>
<p>
-
E. Coli Metabolic Modelling in Matlab
+
<a href="https://2009.igem.org/Team:Alberta/Project/Modeling" target="_blank">E. Coli Metabolic Modelling in Matlab</a>
</p>
</p>
Line 48: Line 49:
<p>
<p>
-
An improved method for deleting large regions of Escherichia coli K-12 chromosome using a combination of Cre/loxP and lambda red Fukiya (2004)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/An improved method for deleting large regions of Escherichia coli K-12 chromosome using a combination of Cre/loxP and lambda red" target="_blank">An improved method for deleting large regions of Escherichia coli K-12 chromosome using a combination of Cre/loxP and lambda red</a>
 +
Fukiya (2004)
</p>
</p>
<p>
<p>
-
Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome Hashimoto (2005)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome" target="_blank">Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome</a>
 +
Hashimoto (2005)
</p>
</p>
<p>
<p>
-
Construction of consecutive deletions of the Escherichia coli chromosome Kato (2007)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Construction of consecutive deletions of the Escherichia coli chromosome" target="_blank">Construction of consecutive deletions of the Escherichia coli chromosome</a>
 +
Kato (2007)
</p>
</p>
<p>
<p>
-
Construction of Escherichia coli K-12 in-frame, single gene knockout mutants: the Keio collection Baba (2006)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Construction of Escherichia coli K-12 in-frame, single gene knockout mutants: the Keio collection" target="_blank">Construction of Escherichia coli K-12 in-frame, single gene knockout mutants: the Keio collection</a>
 +
Baba (2006)
</p>
</p>
<p>
<p>
-
Construction of long chromosomal deletion mutants of Escherichia coli and minimization of the genome Kato (2008)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Construction of long chromosomal deletion mutants of Escherichia coli and minimization of the genome" target="_blank">Construction of long chromosomal deletion mutants of Escherichia coli and minimization of the genome</a>
 +
Kato (2008)
</p>
</p>
<p>
<p>
-
Emergent properties of reduced genome Escherichia coli Posfai (2006)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Emergent properties of reduced genome Escherichia coli" target="_blank">Emergent properties of reduced genome Escherichia coli</a>
 +
Posfai (2006)
</p>
</p>
<p>
<p>
-
Engineering a reduced Escherichia coli genome Kolisnychenko (2002)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Engineering a reduced Escherichia coli genome" target="_blank">Engineering a reduced Escherichia coli genome</a>
 +
Kolisnychenko (2002)
</p>
</p>
<p>
<p>
-
Rapid and efficient construction of markerless deletions in the Escherichia coli genome Yu (2008)  
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Rapid and efficient construction of markerless deletions in the Escherichia coli genome" target="_blank">Rapid and efficient construction of markerless deletions in the Escherichia coli genome</a>
 +
Yu (2008)  
</p>
</p>
Line 75: Line 84:
<p>
<p>
-
Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium Gibson (2008)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium" target="_blank">Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium</a>
 +
Gibson (2008)
</p>
</p>
<p>
<p>
-
DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine Kelman (1995)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine" target="_blank">DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine</a>
 +
Kelman (1995)
</p>
</p>
<p>
<p>
-
DNA Replication Kornberg (1988)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/DNA Replication" target="_blank">DNA Replication</a>
 +
Kornberg (1988)
</p>
</p>
<p>
<p>
-
Enzymatic assembly of DNA molecules up to several hundred kilobases Gibson (2009)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Enzymatic assembly of DNA molecules up to several hundred kilobases" target="_blank">Enzymatic assembly of DNA molecules up to several hundred kilobases</a>
 +
Gibson (2009)
</p>
</p>
<p>
<p>
-
Rebuilding microbial genomes Holt (2007)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Rebuilding microbial genomes" target="_blank">Rebuilding microbial genomes</a>
 +
Holt (2007)
</p>
</p>
<p>
<p>
-
Refactoring bacteriophage T7 Chan (2005)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Refactoring bacteriophage T7" target="_blank">Refactoring bacteriophage T7</a>
 +
Chan (2005)
</p>
</p>
<p>
<p>
-
The replication-related organization of bacterial genomes Rocha (2004)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/The replication-related organization of bacterial genomes" target="_blank">The replication-related organization of bacterial genomes</a>
 +
Rocha (2004)
</p>
</p>
<p>
<p>
-
Shear induced assembly of lambda phage DNA Haber (2000)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Shear induced assembly of lambda phage DNA" target="_blank">Shear induced assembly of lambda phage DNA</a>
 +
Haber (2000)
</p>
</p>
<p>
<p>
-
Structural basis for uracil recognition by archaeal family B DNA polymerases Fogg (2002)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Structural basis for uracil recognition by archaeal family B DNA polymerases" target="_blank">Structural basis for uracil recognition by archaeal family B DNA polymerases</a>
 +
Fogg (2002)
</p>
</p>
<p>
<p>
-
USERTM friendly DNA engineering and cloning method by uracil excision Bitinaite (2007)  
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/USERTM friendly DNA engineering and cloning method by uracil excision" target="_blank">USERTM friendly DNA engineering and cloning method by uracil excision</a>
 +
Bitinaite (2007)  
</p>
</p>
Line 108: Line 127:
<p>
<p>
-
Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome Hashimoto (2005)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome" target="_blank">Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome</a>
 +
Hashimoto (2005)
</p>
</p>
<p>
<p>
-
Escherichia coli physiology in Luria-Bertani broth Sezonov (2007)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Escherichia coli physiology in Luria-Bertani broth" target="_blank">Escherichia coli physiology in Luria-Bertani broth</a>
 +
Sezonov (2007)
</p>
</p>
<p>
<p>
-
Fermentation pathways of Escherichia coli, The Clark (1989)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Fermentation pathways of Escherichia coli, The" target="_blank">Fermentation pathways of Escherichia coli, The</a>
 +
Clark (1989)
</p>
</p>
<p>
<p>
-
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110 Hayashi (2006)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110" target="_blank">Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110</a>
 +
Hayashi (2006)
</p>
</p>
<p>
<p>
-
The replication-related organization of bacterial genomes Rocha (2004)  
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/The replication-related organization of bacterial genomes" target="_blank">The replication-related organization of bacterial genomes</a>
 +
Rocha (2004)  
</p>
</p>
Line 126: Line 150:
<p>
<p>
-
The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame Flower (1986)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame" target="_blank">The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame</a>
 +
Flower (1986)
</p>
</p>
<p>
<p>
-
Chromosomal Locations of the Genes for rRNA in Escherichia coli K-12t Ellwood (1982)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Chromosomal Locations of the Genes for rRNA in Escherichia coli K-12t" target="_blank">Chromosomal Locations of the Genes for rRNA in Escherichia coli K-12t</a>
 +
Ellwood (1982)
</p>
</p>
<p>
<p>
-
Construction of Escherichia coli K-12 in-frame, single gene knockout mutants: the Keio collection Baba (2006)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Construction of Escherichia coli K-12 in-frame, single gene knockout mutants: the Keio collection" target="_blank">Construction of Escherichia coli K-12 in-frame, single gene knockout mutants: the Keio collection</a>
 +
Baba (2006)
</p>
</p>
<p>
<p>
-
Complete set of ORF clones of Escherichia coli ASKA library (a complete set of Escherichia coli K-12 ORF archive): unique resources for biological research Kitagawa (2005)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Complete set of ORF clones of Escherichia coli ASKA library (a complete set of Escherichia coli K-12 ORF archive): unique resources for biological research" target="_blank">Complete set of ORF clones of Escherichia coli ASKA library (a complete set of Escherichia coli K-12 ORF archive): unique resources for biological research</a>
 +
Kitagawa (2005)
</p>
</p>
<p>
<p>
-
Determination of the core of a minimal bacterial gene set Gil (2004)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Determination of the core of a minimal bacterial gene set" target="_blank">Determination of the core of a minimal bacterial gene set</a>
 +
Gil (2004)
</p>
</p>
<p>
<p>
-
DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine Kelman (1995)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine" target="_blank">DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine</a>
 +
Kelman (1995)
</p>
</p>
<p>
<p>
-
Experimental determination and systems level analysis of essential genes in Escherichia coli MG1665 Gerdes (2003)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Experimental determination and systems level analysis of essential genes in Escherichia coli MG1665" target="_blank">Experimental determination and systems level analysis of essential genes in Escherichia coli MG1665</a>
 +
Gerdes (2003)
</p>
</p>
<p>
<p>
-
The Heat-Shock-Regulated grpE Gene of Escherichia coli Is Required for Bacterial Growth at All Temperatures but Is Dispensable in Certain Mutant Backgrounds Ang (1989)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/The Heat-Shock-Regulated grpE Gene of Escherichia coli Is Required for Bacterial Growth at All Temperatures but Is Dispensable in Certain Mutant Backgrounds" target="_blank">The Heat-Shock-Regulated grpE Gene of Escherichia coli Is Required for Bacterial Growth at All Temperatures but Is Dispensable in Certain Mutant Backgrounds</a>
 +
Ang (1989)
</p>
</p>
<p>
<p>
-
Operon Structure of dnaT and dnaC Genes Essential for Normal and Stable DNA Replication of Escherichia coli Chromosome Masai (1988)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Operon Structure of dnaT and dnaC Genes Essential for Normal and Stable DNA Replication of Escherichia coli Chromosome" target="_blank">Operon Structure of dnaT and dnaC Genes Essential for Normal and Stable DNA Replication of Escherichia coli Chromosome</a>
 +
Masai (1988)
</p>
</p>
<p>
<p>
-
Site-directed Mutational Analysis for the ATP Binding of DnaA Protein Mizushima (1998)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Site-directed Mutational Analysis for the ATP Binding of DnaA Protein" target="_blank">Site-directed Mutational Analysis for the ATP Binding of DnaA Protein</a>
 +
Mizushima (1998)
</p>
</p>
-
<h2>Other Genes</h2>
+
<h2>Genes, Other</h2>
<p>
<p>
-
Coding-sequence determinants of gene expression in Escherichia coli Kudla (2009)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Coding-sequence determinants of gene expression in Escherichia coli" target="_blank">Coding-sequence determinants of gene expression in Escherichia coli</a>
 +
Kudla (2009)
</p>
</p>
<p>
<p>
-
Compilation and analysis of Escherichia coli promoter DNA sequences Hawley (1983)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Compilation and analysis of Escherichia coli promoter DNA sequences" target="_blank">Compilation and analysis of Escherichia coli promoter DNA sequences</a>
 +
Hawley (1983)
</p>
</p>
<p>
<p>
-
Effect of dna Mutations on the Replication of Plasmid pSC101 in Escherichia coli K-12 Hasunuma (1979)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Effect of dna Mutations on the Replication of Plasmid pSC101 in Escherichia coli K-12" target="_blank">Effect of dna Mutations on the Replication of Plasmid pSC101 in Escherichia coli K-12</a>
 +
Hasunuma (1979)
</p>
</p>
<p>
<p>
-
Genome-wide expression profiling in Escherichia coli K-12 Richmond (1999)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Genome-wide expression profiling in Escherichia coli K-12" target="_blank">Genome-wide expression profiling in Escherichia coli K-12</a>
 +
Richmond (1999)
</p>
</p>
<p>
<p>
-
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110 Hayashi (2006)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110" target="_blank">Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110</a>
 +
Hayashi (2006)
</p>
</p>
<p>
<p>
-
Idempotent Vector Design for Standard Assembly of Biobricks Knight 2003
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Idempotent Vector Design for Standard Assembly of Biobricks" target="_blank">Idempotent Vector Design for Standard Assembly of Biobricks</a>
 +
Knight 2003
</p>
</p>
<p>
<p>
-
Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli Morgan (1977)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli" target="_blank">Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli</a>
 +
Morgan (1977)
</p>
</p>
<p>
<p>
-
Programming gene expression with combinatorial promoters Cox (2007)  
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Programming gene expression with combinatorial promoters" target="_blank">Programming gene expression with combinatorial promoters</a>
 +
Cox (2007)  
</p>
</p>
 +
 +
<h2>Microfluidics</h2>
 +
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/An inexpensive and portable microchip-based platform for integrated
 +
RT–PCR and capillary electrophoresis" target="_blank">An inexpensive and portable microchip-based platform for integrated
 +
RT–PCR and capillary electrophoresis</a>
 +
Backhouse (2008)
 +
</p>
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/An integrated microfluidic biochemical detection system forprotein analysis with magnetic bead-based samplingcapabilities" target="_blank">An integrated microfluidic biochemical detection system forprotein analysis with magnetic bead-based sampling capabilities</a>
 +
Choi (2001)
 +
</p>
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Development of a microfluidic biosensor module for pathogen detection" target="_blank">Development of a microfluidic biosensor module for pathogen detection</a>
 +
Zaytseva (2005)
 +
</p>
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Magnetic bead handling on-chip: new opportunities for analytical applications" target="_blank">Magnetic bead handling on-chip: new opportunities for analytical applications </a>
 +
Gijs (2004)
 +
</p>
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Microelectromagnet for magnetic manipulation in lab-on-a-chip systems" target="_blank">Microelectromagnet for magnetic manipulation in lab-on-a-chip systems</a>
 +
Smistrup (2005)
 +
</p>
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Microfabricated Device for DNA and RNA Amplification by Continuous-Flow Polymerase Chain Reaction and Reverse Transcription-Polymerase Chain Reaction with Cycle Number Selection" target="_blank">Microfabricated Device for DNA and RNA Amplification by Continuous-Flow Polymerase Chain Reaction and Reverse Transcription-Polymerase Chain Reaction with Cycle Number Selection</a>
 +
Backhouse (2003)
 +
</p>
 +
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/On-chip oligonucleotide ligation assay using one-dimensional microfluidic beads array for the detection of low-abundant DNA point mutations" target="_blank">On-chip oligonucleotide ligation assay using one-dimensional microfluidic beads array for the detection of low-abundant DNA point mutations </a>
 +
Zhang (2005)
 +
</p>
 +
 +
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Electroporation of cells in microfluidic devices: a review" target="_blank">Electroporation of cells in microfluidic devices: a review
 +
</a>
 +
Fox (2006)
 +
 +
</p><p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Microfluidic chip: Next generation platform for systems biology
 +
" target="_blank">Microfluidic chip: Next generation platform for systems biology
 +
</a> Feng (2009)
 +
 +
</p><p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/On-chip transformation of bacteria
 +
" target="_blank">On-chip transformation of bacteria
 +
</a> Nagamine (2005)
 +
 +
</p><p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Small volume PCR in PDMS biochips with integrated fluid
 +
control and vapour barrier" target="_blank">Small volume PCR in PDMS biochips with integrated fluid
 +
control and vapour barrier </a> Prakash (2005)
 +
 +
</p><p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/A microfluidic mammalian cell sorter based on
 +
fluorescence detection" target="_blank">A microfluidic mammalian cell sorter based on
 +
fluorescence detection </a> Studer (2004)
 +
</p>
 +
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/The Digital Revolution: A New Paradigm for
 +
Microfluidics" target="_blank">The Digital Revolution: A New Paradigm for
 +
Microfluidics</a>
 +
Wheeler (2009)
 +
</p>
 +
 +
 +
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Accurate multiplex gene synthesis
 +
from programmable DNA microchips" target="_blank">Accurate multiplex gene synthesis
 +
from programmable DNA microchips</a>
 +
Tian (2004)
 +
</p>
 +
 +
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Lab-on-a-chip: applications in proteomics" target="_blank">Lab-on-a-chip: applications in proteomics</a>
 +
Mouradian (2001)
 +
</p>
 +
 +
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Microfluidic PicoArray synthesis of
 +
oligodeoxynucleotides and simultaneous assembling of multiple DNA sequences" target="_blank">Microfluidic PicoArray synthesis of
 +
oligodeoxynucleotides and simultaneous assembling of multiple DNA sequences</a>
 +
Zhou (2004)
 +
</p>
 +
 +
 +
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/PCR microfluidic devices for DNA amplification" target="_blank">PCR microfluidic devices for DNA amplification</a>
 +
Zhang (2006)
 +
</p>
 +
 +
 +
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/On-chip magnetic bead microarray using hydrodynamic focusing in a
 +
passive magnetic separator" target="_blank">On-chip magnetic bead microarray using hydrodynamic focusing in a
 +
passive magnetic separator</a>
 +
Smistrup (2005)
 +
</p>
 +
 +
 +
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Monolithic Microfabricated
 +
Valves and Pumps by Multilayer
 +
Soft Lithography" target="_blank">Monolithic Microfabricated
 +
Valves and Pumps by Multilayer
 +
Soft Lithography</a>
 +
Quake (2000)
 +
</p>
 +
 +
 +
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Microfluidic devices fabricated in
 +
poly(dimethylsiloxane) for biological studies" target="_blank">Microfluidic devices fabricated in
 +
poly(dimethylsiloxane) for biological studies</a>
 +
Sia (2003)
 +
</p>
 +
 +
 +
 +
 +
 +
<p>
 +
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Nucleic acid purification using microfabricated silicon structures" target="_blank">Nucleic acid purification using microfabricated silicon structures</a>
 +
Cady (2003)
 +
</p>
 +
 +
 +
<h2>Nucleic Acid Properties</h2>
<h2>Nucleic Acid Properties</h2>
<p>
<p>
-
Binding of biotinylated DNA to streptavidin-coated polystyrene latex: effects of chain length and particle size Huang (1996)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Binding of biotinylated DNA to streptavidin-coated polystyrene latex: effects of chain length and particle size" target="_blank">Binding of biotinylated DNA to streptavidin-coated polystyrene latex: effects of chain length and particle size</a>
 +
Huang (1996)
</p>
</p>
<p>
<p>
-
Dynamic strength of molecular adhesion bonds Evans (1997)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Dynamic strength of molecular adhesion bonds" target="_blank">Dynamic strength of molecular adhesion bonds</a>
 +
Evans (1997)
</p>
</p>
<p>
<p>
-
The effect of hydrodynamic shear of DNA from T2 and T4 bacteriophages Davison (1959)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/The effect of hydrodynamic shear of DNA from T2 and T4 bacteriophages" target="_blank">The effect of hydrodynamic shear of DNA from T2 and T4 bacteriophages</a>
 +
Davison (1959)
</p>
</p>
<p>
<p>
-
Effect of shear on plasmid DNA in solution Levy (1999)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Effect of shear on plasmid DNA in solution" target="_blank">Effect of shear on plasmid DNA in solution</a>
 +
Levy (1999)
</p>
</p>
<p>
<p>
-
Folding and unfolding single RNA molecules under tension Woodside (2008)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Folding and unfolding single RNA molecules under tension" target="_blank">Folding and unfolding single RNA molecules under tension</a>
 +
Woodside (2008)
</p>
</p>
<p>
<p>
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays Bernstein (2002)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays" target="_blank">Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays</a>
 +
Bernstein (2002)
</p>
</p>
<p>
<p>
-
Shear breakage of DNA Dancis (1978)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Shear breakage of DNA" target="_blank">Shear breakage of DNA</a>
 +
Dancis (1978)
</p>
</p>
<p>
<p>
-
Shear degradation of DNA Adam (1977)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Shear degradation of DNA" target="_blank">Shear degradation of DNA</a>
 +
Adam (1977)
</p>
</p>
<p>
<p>
-
Shear-induced degradation of plasmid DNA Lengsfeld (2002)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Shear-induced degradation of plasmid DNA" target="_blank">Shear-induced degradation of plasmid DNA</a>
 +
Lengsfeld (2002)
</p>
</p>
<p>
<p>
-
Shear unzipping of DNA Chakrabarti (2009)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Shear unzipping of DNA" target="_blank">Shear unzipping of DNA</a>
 +
Chakrabarti (2009)
</p>
</p>
<p>
<p>
-
Stochastic simulations of DNA in flow: dynamics and the effects of hydrodynamic interactions Jendrejack (2002)  
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Stochastic simulations of DNA in flow: dynamics and the effects of hydrodynamic interactions" target="_blank">Stochastic simulations of DNA in flow: dynamics and the effects of hydrodynamic interactions</a>
 +
Jendrejack (2002)  
</p>
</p>
<h2>Operons</h2>
<h2>Operons</h2>
<p>
<p>
-
Engineering of bacterial ribosomes: Replacement of all seven Escherichia coli rRNA operons by a single plasmid-encoded operon Nomura (1999)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Engineering of bacterial ribosomes: Replacement of all seven Escherichia coli rRNA operons by a single plasmid-encoded operon" target="_blank">Engineering of bacterial ribosomes: Replacement of all seven Escherichia coli rRNA operons by a single plasmid-encoded operon</a>
 +
Nomura (1999)
</p>
</p>
<p>
<p>
-
Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli Morgan (1977)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli" target="_blank">Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli</a>
 +
Morgan (1977)
</p>
</p>
<p>
<p>
-
Operon Structure of dnaT and dnaC Genes Essential for Normal and Stable DNA Replication of Escherichia coli Chromosome Masai (1988)  
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Operon Structure of dnaT and dnaC Genes Essential for Normal and Stable DNA Replication of Escherichia coli Chromosome" target="_blank">Operon Structure of dnaT and dnaC Genes Essential for Normal and Stable DNA Replication of Escherichia coli Chromosome</a>
 +
Masai (1988)  
</p>
</p>
-
 
-
<h2>REGULATION-MISSING ON INTERNAL WIKI??</h2>
 
<h2>Recombination</h2>
<h2>Recombination</h2>
<p>
<p>
-
An improved method for deleting large regions of Escherichia coli K-12 chromosome using a combination of Cre/loxP and lambda red Fukiya (2004)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/An improved method for deleting large regions of Escherichia coli K-12 chromosome using a combination of Cre/loxP and lambda red" target="_blank">An improved method for deleting large regions of Escherichia coli K-12 chromosome using a combination of Cre/loxP and lambda red</a>
 +
Fukiya (2004)
</p>
</p>
<p>
<p>
-
Biochemistry of homologous recombination in Escherichia coli Kowalczykowski (1994)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Biochemistry of homologous recombination in Escherichia coli" target="_blank">Biochemistry of homologous recombination in Escherichia coli</a>
 +
Kowalczykowski (1994)
</p>
</p>
<p>
<p>
-
Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome Hashimoto (2005)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome" target="_blank">Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome</a>
 +
Hashimoto (2005)
</p>
</p>
<p>
<p>
-
Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector Shizuya (1992)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector" target="_blank">Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector</a>
 +
Shizuya (1992)
</p>
</p>
<p>
<p>
-
Conditional-Replication, Integration, Excision, and Retrieval Plasmid-Host Systems for Gene Structure-Function Studies of Bacteria Haldimann (2001)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Conditional-Replication, Integration, Excision, and Retrieval Plasmid-Host Systems for Gene Structure-Function Studies of Bacteria" target="_blank">Conditional-Replication, Integration, Excision, and Retrieval Plasmid-Host Systems for Gene Structure-Function Studies of Bacteria</a>
 +
Haldimann (2001)
</p>
</p>
<p>
<p>
-
Construction of consecutive deletions of the Escherichia coli chromosome Kato (2007)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Construction of consecutive deletions of the Escherichia coli chromosome" target="_blank">Construction of consecutive deletions of the Escherichia coli chromosome</a>
 +
Kato (2007)
</p>
</p>
<p>
<p>
-
Construction of long chromosomal deletion mutants of Escherichia coli and minimization of the genome Kato (2008)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Construction of long chromosomal deletion mutants of Escherichia coli and minimization of the genome" target="_blank">Construction of long chromosomal deletion mutants of Escherichia coli and minimization of the genome</a>
 +
Kato (2008)
</p>
</p>
<p>
<p>
-
DNA cloning by homologous recombination in Escherichia coli Zhang (2000)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/DNA cloning by homologous recombination in Escherichia coli" target="_blank">DNA cloning by homologous recombination in Escherichia coli</a>
 +
Zhang (2000)
</p>
</p>
<p>
<p>
-
Engineering a reduced Escherichia coli genome Kolisnychenko (2002)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Engineering a reduced Escherichia coli genome" target="_blank">Engineering a reduced Escherichia coli genome</a>
 +
Kolisnychenko (2002)
</p>
</p>
<p>
<p>
-
Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli Herring (2007)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli" target="_blank">Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli</a>
 +
Herring (2007)
</p>
</p>
<p>
<p>
-
Gene splicing and mutagenesis by PCR driven overlap extension Heckman (2007)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Gene splicing and mutagenesis by PCR driven overlap extension" target="_blank">Gene splicing and mutagenesis by PCR driven overlap extension</a>
 +
Heckman (2007)
</p>
</p>
<p>
<p>
-
In vivo transposition of mariner based elements in enteric bacteria and mycobacteria Rubin (1999)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/In vivo transposition of mariner based elements in enteric bacteria and mycobacteria" target="_blank">In vivo transposition of mariner based elements in enteric bacteria and mycobacteria</a>
 +
Rubin (1999)
</p>
</p>
<p>
<p>
-
Markerless gene replacement in Escherichia coli stimulated by double strand break in the chromosome Posfai (1999)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Markerless gene replacement in Escherichia coli stimulated by double strand break in the chromosome" target="_blank">Markerless gene replacement in Escherichia coli stimulated by double strand break in the chromosome</a>
 +
Posfai (1999)
</p>
</p>
<p>
<p>
-
One step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome Gibson (2008)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/One step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome" target="_blank">One step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome</a>
 +
Gibson (2008)
</p>
</p>
<p>
<p>
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products Datsenko (2000)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products" target="_blank">One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products</a>
 +
Datsenko (2000)
</p>
</p>
<p>
<p>
-
Phage integrases: biology and applications Groth (2004)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Phage integrases: biology and applications" target="_blank">Phage integrases: biology and applications</a>
 +
Groth (2004)
</p>
</p>
<p>
<p>
-
Rapid and efficient construction of markerless deletions in the Escherichia coli genome Yu (2008)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Rapid and efficient construction of markerless deletions in the Escherichia coli genome" target="_blank">Rapid and efficient construction of markerless deletions in the Escherichia coli genome</a>
 +
Yu (2008)
</p>
</p>
<p>
<p>
-
Recombineering with tolC as a selectable/counter-selectable marker: remodeling the rRNA operons in Escherichia coli DeVito (2007)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Recombineering with tolC as a selectable/counter-selectable marker: remodeling the rRNA operons in Escherichia coli" target="_blank">Recombineering with tolC as a selectable/counter-selectable marker: remodeling the rRNA operons in Escherichia coli</a>
 +
DeVito (2007)
</p>
</p>
<p>
<p>
-
Scarless engineering of the Escherichia coli genome Feher (2008)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Scarless engineering of the Escherichia coli genome" target="_blank">Scarless engineering of the Escherichia coli genome</a>
 +
Feher (2008)
</p>
</p>
<p>
<p>
-
Shear induced assembly of lambda phage DNA Haber (2000)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Shear induced assembly of lambda phage DNA" target="_blank">Shear induced assembly of lambda phage DNA</a>
 +
Haber (2000)
</p>
</p>
<p>
<p>
-
Simple and highly efficient BAC recombineering using galK selection Warming (2005)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Simple and highly efficient BAC recombineering using galK selection" target="_blank">Simple and highly efficient BAC recombineering using galK selection</a>
 +
Warming (2005)
</p>
</p>
<p>
<p>
-
Techniques: recombinogenic engineering - new options for cloning and manipulating DNA Muyrers (2001)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Techniques: recombinogenic engineering - new options for cloning and manipulating DNA" target="_blank">Techniques: recombinogenic engineering - new options for cloning and manipulating DNA</a>
 +
Muyrers (2001)
</p>
</p>
Line 304: Line 519:
<p>
<p>
-
Engineering BioBrick vectors from BioBrick parts Shetty (2008)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Engineering BioBrick vectors from BioBrick parts" target="_blank">Engineering BioBrick vectors from BioBrick parts</a>
 +
Shetty (2008)
</p>
</p>
<p>
<p>
-
Idempotent Vector Design for Standard Assembly of Biobricks Knight 2003
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Idempotent Vector Design for Standard Assembly of Biobricks" target="_blank">Idempotent Vector Design for Standard Assembly of Biobricks</a>
 +
Knight 2003
</p>
</p>
<p>
<p>
-
Refactoring bacteriophage T7 Chan (2005)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Refactoring bacteriophage T7" target="_blank">Refactoring bacteriophage T7</a>
 +
Chan (2005)
</p>
</p>
<p>
<p>
-
Refinement and standardization of synthetic biological parts and devices Canton (2008)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Refinement and standardization of synthetic biological parts and devices" target="_blank">Refinement and standardization of synthetic biological parts and devices</a>
 +
Canton (2008)
</p>
</p>
<p>
<p>
-
Setting the standard in synthetic biology Arkin (2008)  
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Setting the standard in synthetic biology" target="_blank">Setting the standard in synthetic biology</a>
 +
Arkin (2008)  
</p>
</p>
Line 322: Line 542:
<p>
<p>
-
Transformation of Escherichia coli with large DNA molecules by electroporation Sheng (1995)  
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Transformation of Escherichia coli with large DNA molecules by electroporation" target="_blank">Transformation of Escherichia coli with large DNA molecules by electroporation</a>
 +
Sheng (1995)  
</p>
</p>
Line 328: Line 549:
<p>
<p>
-
A family of LIC vectors for high through-put cloning and purification of proteins Eschenfeldt (2009)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/A family of LIC vectors for high through-put cloning and purification of proteins" target="_blank">A family of LIC vectors for high through-put cloning and purification of proteins</a>
 +
Eschenfeldt (2009)
</p>
</p>
<p>
<p>
-
Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector Shizuya (1992)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector" target="_blank">Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector</a>
 +
Shizuya (1992)
</p>
</p>
<p>
<p>
-
Effect of dna Mutations on the Replication of Plasmid pSC101 in Escherichia coli K-12 Hasunuma (1979)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Effect of dna Mutations on the Replication of Plasmid pSC101 in Escherichia coli K-12" target="_blank">Effect of dna Mutations on the Replication of Plasmid pSC101 in Escherichia coli K-12</a>
 +
Hasunuma (1979)
</p>
</p>
<p>
<p>
-
Engineering BioBrick vectors from BioBrick parts Shetty (2008)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Engineering BioBrick vectors from BioBrick parts" target="_blank">Engineering BioBrick vectors from BioBrick parts</a>
 +
Shetty (2008)
</p>
</p>
<p>
<p>
-
Identification of the mob Genes of Plasmid pSC101 and Characterization of a Hybrid pSC101-R1162 System for Conjugal Mobilization Meyer (2000)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Identification of the mob Genes of Plasmid pSC101 and Characterization of a Hybrid pSC101-R1162 System for Conjugal Mobilization" target="_blank">Identification of the mob Genes of Plasmid pSC101 and Characterization of a Hybrid pSC101-R1162 System for Conjugal Mobilization</a>
 +
Meyer (2000)
</p>
</p>
<p>
<p>
-
Primary structure of the essential replicon of the plasmid pSC101 Vocke (1983)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Primary structure of the essential replicon of the plasmid pSC101" target="_blank">Primary structure of the essential replicon of the plasmid pSC101</a>
 +
Vocke (1983)
</p>
</p>
<p>
<p>
-
Replication of plasmid pSC101 Manen (1991)
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Replication of plasmid pSC101" target="_blank">Replication of plasmid pSC101</a>
 +
Manen (1991)
</p>
</p>
<p>
<p>
-
Simple and highly efficient BAC recombineering using galK selection Warming (2005)  
+
<a href="https://2009.igem.org/Team:Alberta/References/Publications/Simple and highly efficient BAC recombineering using galK selection" target="_blank">Simple and highly efficient BAC recombineering using galK selection</a>
 +
Warming (2005)  
</p>
</p>

Latest revision as of 15:02, 21 October 2009

University of Alberta - BioBytes










































































































References

Bioinformatics

BioWarehouse: a bioinformatics database warehouse toolkit Lee (2006)

Triad pattern algorithms for predicting strong promoter candidates in bacterial genomes Dekhtyar (2008)

Vector NTI, a balanced all-in-one sequence analysis suite Lu (2004)

E. Coli Metabolic Modelling in Matlab

Deletion

An improved method for deleting large regions of Escherichia coli K-12 chromosome using a combination of Cre/loxP and lambda red Fukiya (2004)

Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome Hashimoto (2005)

Construction of consecutive deletions of the Escherichia coli chromosome Kato (2007)

Construction of Escherichia coli K-12 in-frame, single gene knockout mutants: the Keio collection Baba (2006)

Construction of long chromosomal deletion mutants of Escherichia coli and minimization of the genome Kato (2008)

Emergent properties of reduced genome Escherichia coli Posfai (2006)

Engineering a reduced Escherichia coli genome Kolisnychenko (2002)

Rapid and efficient construction of markerless deletions in the Escherichia coli genome Yu (2008)

DNA Assembly

Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium Gibson (2008)

DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine Kelman (1995)

DNA Replication Kornberg (1988)

Enzymatic assembly of DNA molecules up to several hundred kilobases Gibson (2009)

Rebuilding microbial genomes Holt (2007)

Refactoring bacteriophage T7 Chan (2005)

The replication-related organization of bacterial genomes Rocha (2004)

Shear induced assembly of lambda phage DNA Haber (2000)

Structural basis for uracil recognition by archaeal family B DNA polymerases Fogg (2002)

USERTM friendly DNA engineering and cloning method by uracil excision Bitinaite (2007)

E. coli Physiology

Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome Hashimoto (2005)

Escherichia coli physiology in Luria-Bertani broth Sezonov (2007)

Fermentation pathways of Escherichia coli, The Clark (1989)

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110 Hayashi (2006)

The replication-related organization of bacterial genomes Rocha (2004)

Essential Genes

The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame Flower (1986)

Chromosomal Locations of the Genes for rRNA in Escherichia coli K-12t Ellwood (1982)

Construction of Escherichia coli K-12 in-frame, single gene knockout mutants: the Keio collection Baba (2006)

Complete set of ORF clones of Escherichia coli ASKA library (a complete set of Escherichia coli K-12 ORF archive): unique resources for biological research Kitagawa (2005)

Determination of the core of a minimal bacterial gene set Gil (2004)

DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine Kelman (1995)

Experimental determination and systems level analysis of essential genes in Escherichia coli MG1665 Gerdes (2003)

The Heat-Shock-Regulated grpE Gene of Escherichia coli Is Required for Bacterial Growth at All Temperatures but Is Dispensable in Certain Mutant Backgrounds Ang (1989)

Operon Structure of dnaT and dnaC Genes Essential for Normal and Stable DNA Replication of Escherichia coli Chromosome Masai (1988)

Site-directed Mutational Analysis for the ATP Binding of DnaA Protein Mizushima (1998)

Genes, Other

Coding-sequence determinants of gene expression in Escherichia coli Kudla (2009)

Compilation and analysis of Escherichia coli promoter DNA sequences Hawley (1983)

Effect of dna Mutations on the Replication of Plasmid pSC101 in Escherichia coli K-12 Hasunuma (1979)

Genome-wide expression profiling in Escherichia coli K-12 Richmond (1999)

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110 Hayashi (2006)

Idempotent Vector Design for Standard Assembly of Biobricks Knight 2003

Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli Morgan (1977)

Programming gene expression with combinatorial promoters Cox (2007)

Microfluidics

An inexpensive and portable microchip-based platform for integrated RT–PCR and capillary electrophoresis Backhouse (2008)

An integrated microfluidic biochemical detection system forprotein analysis with magnetic bead-based sampling capabilities Choi (2001)

Development of a microfluidic biosensor module for pathogen detection Zaytseva (2005)

Magnetic bead handling on-chip: new opportunities for analytical applications Gijs (2004)

Microelectromagnet for magnetic manipulation in lab-on-a-chip systems Smistrup (2005)

Microfabricated Device for DNA and RNA Amplification by Continuous-Flow Polymerase Chain Reaction and Reverse Transcription-Polymerase Chain Reaction with Cycle Number Selection Backhouse (2003)

On-chip oligonucleotide ligation assay using one-dimensional microfluidic beads array for the detection of low-abundant DNA point mutations Zhang (2005)

Electroporation of cells in microfluidic devices: a review Fox (2006)

Microfluidic chip: Next generation platform for systems biology Feng (2009)

On-chip transformation of bacteria Nagamine (2005)

Small volume PCR in PDMS biochips with integrated fluid control and vapour barrier Prakash (2005)

A microfluidic mammalian cell sorter based on fluorescence detection Studer (2004)

The Digital Revolution: A New Paradigm for Microfluidics Wheeler (2009)

Accurate multiplex gene synthesis from programmable DNA microchips Tian (2004)

Lab-on-a-chip: applications in proteomics Mouradian (2001)

Microfluidic PicoArray synthesis of oligodeoxynucleotides and simultaneous assembling of multiple DNA sequences Zhou (2004)

PCR microfluidic devices for DNA amplification Zhang (2006)

On-chip magnetic bead microarray using hydrodynamic focusing in a passive magnetic separator Smistrup (2005)

Monolithic Microfabricated Valves and Pumps by Multilayer Soft Lithography Quake (2000)

Microfluidic devices fabricated in poly(dimethylsiloxane) for biological studies Sia (2003)

Nucleic acid purification using microfabricated silicon structures Cady (2003)

Nucleic Acid Properties

Binding of biotinylated DNA to streptavidin-coated polystyrene latex: effects of chain length and particle size Huang (1996)

Dynamic strength of molecular adhesion bonds Evans (1997)

The effect of hydrodynamic shear of DNA from T2 and T4 bacteriophages Davison (1959)

Effect of shear on plasmid DNA in solution Levy (1999)

Folding and unfolding single RNA molecules under tension Woodside (2008)

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays Bernstein (2002)

Shear breakage of DNA Dancis (1978)

Shear degradation of DNA Adam (1977)

Shear-induced degradation of plasmid DNA Lengsfeld (2002)

Shear unzipping of DNA Chakrabarti (2009)

Stochastic simulations of DNA in flow: dynamics and the effects of hydrodynamic interactions Jendrejack (2002)

Operons

Engineering of bacterial ribosomes: Replacement of all seven Escherichia coli rRNA operons by a single plasmid-encoded operon Nomura (1999)

Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli Morgan (1977)

Operon Structure of dnaT and dnaC Genes Essential for Normal and Stable DNA Replication of Escherichia coli Chromosome Masai (1988)

Recombination

An improved method for deleting large regions of Escherichia coli K-12 chromosome using a combination of Cre/loxP and lambda red Fukiya (2004)

Biochemistry of homologous recombination in Escherichia coli Kowalczykowski (1994)

Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome Hashimoto (2005)

Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector Shizuya (1992)

Conditional-Replication, Integration, Excision, and Retrieval Plasmid-Host Systems for Gene Structure-Function Studies of Bacteria Haldimann (2001)

Construction of consecutive deletions of the Escherichia coli chromosome Kato (2007)

Construction of long chromosomal deletion mutants of Escherichia coli and minimization of the genome Kato (2008)

DNA cloning by homologous recombination in Escherichia coli Zhang (2000)

Engineering a reduced Escherichia coli genome Kolisnychenko (2002)

Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli Herring (2007)

Gene splicing and mutagenesis by PCR driven overlap extension Heckman (2007)

In vivo transposition of mariner based elements in enteric bacteria and mycobacteria Rubin (1999)

Markerless gene replacement in Escherichia coli stimulated by double strand break in the chromosome Posfai (1999)

One step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome Gibson (2008)

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products Datsenko (2000)

Phage integrases: biology and applications Groth (2004)

Rapid and efficient construction of markerless deletions in the Escherichia coli genome Yu (2008)

Recombineering with tolC as a selectable/counter-selectable marker: remodeling the rRNA operons in Escherichia coli DeVito (2007)

Scarless engineering of the Escherichia coli genome Feher (2008)

Shear induced assembly of lambda phage DNA Haber (2000)

Simple and highly efficient BAC recombineering using galK selection Warming (2005)

Techniques: recombinogenic engineering - new options for cloning and manipulating DNA Muyrers (2001)

Synthetic Biology

Engineering BioBrick vectors from BioBrick parts Shetty (2008)

Idempotent Vector Design for Standard Assembly of Biobricks Knight 2003

Refactoring bacteriophage T7 Chan (2005)

Refinement and standardization of synthetic biological parts and devices Canton (2008)

Setting the standard in synthetic biology Arkin (2008)

Transformation

Transformation of Escherichia coli with large DNA molecules by electroporation Sheng (1995)

Vectors

A family of LIC vectors for high through-put cloning and purification of proteins Eschenfeldt (2009)

Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector Shizuya (1992)

Effect of dna Mutations on the Replication of Plasmid pSC101 in Escherichia coli K-12 Hasunuma (1979)

Engineering BioBrick vectors from BioBrick parts Shetty (2008)

Identification of the mob Genes of Plasmid pSC101 and Characterization of a Hybrid pSC101-R1162 System for Conjugal Mobilization Meyer (2000)

Primary structure of the essential replicon of the plasmid pSC101 Vocke (1983)

Replication of plasmid pSC101 Manen (1991)

Simple and highly efficient BAC recombineering using galK selection Warming (2005)