Team:EPF-Lausanne/Modeling

                               

To do

- Model allosteric interactions between LOVTAP & TrpR

What will be done:

- Model of LOVTAP in dark phase

- Model of LOVTAP in light phase

- Characterize how the J-alpha helix changes

- Model structural changes that enhance the switch feature of LOVTAP e.g. in dark phase: really weak interaction between LOVTAP and the corresponding DNA sequence, in light phase: strong binding of LOVTAP on DNA.

- Between Light state and Dark State

- RMS between light state and dark state

- length between the two arms N C

- only cytochrome with interactions in light state and dark state

To envisage

- Molecular mutational assay