Team:Groningen/Brainstorm/Modelling

From 2009.igem.org

(Difference between revisions)
(First few systems from 2008)
(More from 2008)
Line 3: Line 3:
*RNA folding (secondary structure)
*RNA folding (secondary structure)
**[https://2008.igem.org/Team:Alberta_NINT/Modeling Alberta 2008], using [http://rna.urmc.rochester.edu/rnastructure.html RNAstructure] and UNAFold (with a front-end), they used both programs (presumably to get an idea of the certainty)
**[https://2008.igem.org/Team:Alberta_NINT/Modeling Alberta 2008], using [http://rna.urmc.rochester.edu/rnastructure.html RNAstructure] and UNAFold (with a front-end), they used both programs (presumably to get an idea of the certainty)
-
*Molecular Circuit (?)
+
*Molecular/genetic Circuit (?)
**[https://2008.igem.org/Team:Bologna/Modeling Bologna 2008], using Simulink (Mathworks)
**[https://2008.igem.org/Team:Bologna/Modeling Bologna 2008], using Simulink (Mathworks)
**[https://2008.igem.org/Team:ETH_Zurich/Modeling/Switch_Circuit ETH Zurich 2008], using the Symbiology toolbox in Matlab
**[https://2008.igem.org/Team:ETH_Zurich/Modeling/Switch_Circuit ETH Zurich 2008], using the Symbiology toolbox in Matlab
 +
**[https://2008.igem.org/Team:iHKU/modeling IHKU 2008]
*Cell processes
*Cell processes
**[https://2008.igem.org/Modeling Calgary 2008], using their own tool (transcription and translation)
**[https://2008.igem.org/Modeling Calgary 2008], using their own tool (transcription and translation)
*Static genome analysis (?)
*Static genome analysis (?)
**[https://2008.igem.org/Team:ETH_Zurich/Modeling/Genome_Static_Analysis ETH Zurich 2008], using their own tool
**[https://2008.igem.org/Team:ETH_Zurich/Modeling/Genome_Static_Analysis ETH Zurich 2008], using their own tool
-
*Genome Scale Model (cell physiology)
+
*Genome Scale Model (whole cell response)
-
**[https://2008.igem.org/Team:ETH_Zurich/Modeling/Genome-Scale_Model ETH Zurich 2008]
+
**[https://2008.igem.org/Team:ETH_Zurich/Modeling/Genome-Scale_Model ETH Zurich 2008], using the [http://gcrg.ucsd.edu/Downloads/Cobra_Toolbox Cobra Toolbox] for Matlab
 +
*Chemostat simulation
 +
**[https://2008.igem.org/Team:ETH_Zurich/Modeling/Chemostat_Selection ETH Zurich 2008], using their genome scale model data
 +
*Cell movement
 +
**[https://2008.igem.org/Team:iHKU/modeling IHKU 2008], as random walks
==Literature==
==Literature==
See our [[Team:Groningen/Literature/Modelling|literature list]]. For our team members that are looking for books on the subject, have a look under code 605B (Bernoulliborg library, lower floor).
See our [[Team:Groningen/Literature/Modelling|literature list]]. For our team members that are looking for books on the subject, have a look under code 605B (Bernoulliborg library, lower floor).

Revision as of 09:44, 22 April 2009

Systems from previous years

Literature

See our literature list. For our team members that are looking for books on the subject, have a look under code 605B (Bernoulliborg library, lower floor).