Team:Groningen/Brainstorm/Modelling

From 2009.igem.org

(Difference between revisions)
(Some from the last column of 2008.)
Line 34: Line 34:
**[https://2008.igem.org/Team:University_of_Lethbridge/Modeling Lethbridge 2008], using [http://www.pdn.cam.ac.uk/groups/comp-cell/BCT.html BCT] (a tool to model the chemotaxis pathway of E. Coli?)
**[https://2008.igem.org/Team:University_of_Lethbridge/Modeling Lethbridge 2008], using [http://www.pdn.cam.ac.uk/groups/comp-cell/BCT.html BCT] (a tool to model the chemotaxis pathway of E. Coli?)
**[https://2008.igem.org/Chemotaxis_Modeling Tsinghua 2008], using their own code?
**[https://2008.igem.org/Chemotaxis_Modeling Tsinghua 2008], using their own code?
 +
*'''NEED TO MERGE'''
 +
**Gene Regulatory Networks (GRNs)
 +
***[https://2008.igem.org/Team:BCCS-Bristol/Modeling-GRN BCCS-Bristol 2008]
 +
**Stochastic Agent Based Simulation
 +
***[https://2008.igem.org/Team:BCCS-Bristol/Modeling-Agent_Based BCCS-Bristol 2008]
 +
**Hybrid Model (BSim v2)
 +
***[https://2008.igem.org/Team:BCCS-Bristol/Modeling-Hybrid BCCS-Bristol 2008]
 +
**Genetic Network Generating Spatial Patterns Through Cell-Cell Communication and Controlled Information Processing
 +
***[https://2008.igem.org/Team:EPF-Lausanne/Modeling EPF-Lausanne], need to find exactly what they did.
 +
**Conways game of life
 +
***[https://2008.igem.org/Team:Groningen/modeling_SingleCell.html Groningen!], singel cell
 +
***[https://2008.igem.org/Team:Groningen/modeling_Spatial.html Groningen], spatial approach
 +
***[https://2008.igem.org/Team:Groningen/modeling_files.html Groningen], modeling files
 +
**Ecolicence to kill: Engineering E.coli for targeting pathogenic microorganisms
 +
***[https://2008.igem.org/Team:Heidelberg/Modeling Heidelberg]
 +
**Dr. Coli, the bacterial drug delivery system
 +
***[https://2008.igem.org/Team:KULeuven/Model/Overview KULeuven], done very decently
 +
**Occilations in large numbers of cells
 +
***[https://2008.igem.org/Team:Montreal/Modeling Montreal], done in mathematica, serveral years of research
 +
**Bacterial Clock
 +
***[https://2008.igem.org/Team:Paris/Construction Paris], see how this fits in one of our projects
 +
**Cellular Memory
 +
***[https://2008.igem.org/Team:UCSF/Modeling UCSF], perhaps for growth stages?
 +
**Quorum sensing
 +
***[https://2008.igem.org/Team:Cambridge/Modelling#Modelling_the_complete_agr-quorum_sensing_system Cambridge], Perhaps for growth stages?
 +
**Light sensing
 +
***[https://2008.igem.org/Team:Imperial_College/Dry_Lab Imperial College Londen], mayby for one of our projects.
 +
**The floating Bacteria
 +
***[https://2008.igem.org/Team:Kyoto/Project Kyoto], lets have a very good look at what these guys have been doing
 +
**Genetic Cricuit
 +
***[https://2008.igem.org/Team:Peking_University/Modeling Peking]
Other potentially interesting software tools:
Other potentially interesting software tools:

Revision as of 11:13, 22 April 2009

Software tools from previous years

Other potentially interesting software tools:

Literature

See our literature list. For our team members that are looking for books on the subject, have a look under code 605B (Bernoulliborg library, lower floor), as well as 605C/D/E (A and Z also exist but seem to be less interesting).