Team:Groningen/Notebook/20 July 2009

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Wet

GVP Cluster

Precipitation of the restriction fragments from GVP, J23109, J23100 and J23106

To concentrate BBa_J23109, BBa_J23100, BBa_J23106 and GVP it is first precipitated and then MQ is added.

Procedure:

  • 100 μl absolute ethanol is added to ~50 μl Restriction fragment of GVP (12.1 ng/μL),J23109 (13.1 ng/μl), J23100 (11.9 ng/μl) and J23106 (11.1 ng/μl).
  • Incubation -80°C for 1 h
  • Centrifugation 30 min 0°C (14000rpm)
  • Supernatant is removed
  • Wash with 1000 μl 96% Ethanol (added ethanol and inverted a couple of times)
  • Centrifugation 10 min 4°C (14000rpm)
  • o/n air dried on bench top

Preparation of 1-14N and 1-1D for glycerol stocks, restiction analysis and 3A assembly

1-14N () and 1-1D () are inducible promoters, induced by L-arabinose and lactose (or IPTG) respectively.

  • DNA from iGEM plates resuspended in 15 μL MQ and stored at -20°C


Transporters

Below the PCR of 17/07, There seems to be a vague band at ~1150 in lane 1.


F102471 2009-07-17 08hr 29min pcr1,pcr2 noted.JPG

The band at ~1150 kb was cut out of the gel and used for pcr described below.

PCR1 gel
Component amount
MasterMix NH4 40 uL
HmtA Fw 1 uL
HmtA mut1RC 1 uL
PCR1 band
Taq polymerase 2uL


PCR1 program Temperature Time
Denaturing 95° 5 min
Start Cycles 30X
Denaturing 95° 20 sec
Annealing 55° 20 sec
Elongation 72° 1.10 min
End cycles
Final elongation 72° 10 min
Hold Forever

Metal Accumulation

Vectors

Positive control for the psB1AC3 vector done with both new and last years primers.


VR-VF2
Component amount
MasterMix NH4 21 uL
F primer 1 uL
R primer 1 uL
psB1AC3 vector 0.5 uL
Taq polymerase 1 uL


Primers
Cup nr F primer R primer
1 VF2 iGEMGr09 VR iGEMGr09
2 VF2 iGEMGr09 VR iGEMGr08 Aug
3 VF2 iGEMGr09 VR iGEMGr June
4 VF2 iGEMGr08 VR iGEMGr09
5 VF2 iGEMGr08 VR iGEMGr08 Aug
6 VF2 iGEMGr08 VR iGEMGr June


VR VF2 program
Stage Temperature Time
Denaturing 95° 5 min
Start Cycles 30X
Denaturing 95° 20 sec
Annealing 55° 20 sec
Elongation 72° 20 sec
End cycles
Final elongation 72° 10 min
Hold Forever

The gel shown below shows bands at about 1000 which is not what would be expected. Band of 315 were expected for lanes 1-6.

F102471 2009-07-20 08hr 30min noted.JPG

Dry

April
MTWTFSS
    1 2 3 4 5
6 7 8 9 10 11 12
13 14 15 16 17 18 19
20 21 22 23 24 25 26
27 28 29 30
May
MTWTFSS
        1 2 3
4 5 6 7 8 9 10
11 12 13 14 15 16 17
18 19 20 21 22 23 24
25 26 27 28 29 30 31
June
MTWTFSS
1 2 3 4 5 6 7
8 9 10 11 12 13 14
15 16 17 18 19 20 21
22 23 24 25 26 27 28
29 30
July
MTWTFSS
    1 2 3 4 5
6 7 8 9 10 11 12
13 14 15 16 17 18 19
20 21 22 23 24 25 26
27 28 29 30 31
August
MTWTFSS
          1 2
3 4 5 6 7 8 9
10 11 12 13 14 15 16
17 18 19 20 21 22 23
24 25 26 27 28 29 30
31
September
MTWTFSS
  1 2 3 4 5 6
7 8 9 10 11 12 13
14 15 16 17 18 19 20
21 22 23 24 25 26 27
28 29 30
October
MTWTFSS
      1 2 3 4
5 6 7 8 9 10 11
12 13 14 15 16 17 18
19 20 21 22 23 24 25
26 27 28 29 30 31
November
MTWTFSS
            1
2 3 4 5 6 7 8
9 10 11 12 13 14 15
16 17 18 19 20 21 22
23 24 25 26 27 28 29
30