Team:HKUST/Group3

From 2009.igem.org

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<li><a href="https://2009.igem.org/Team:HKUST/Team">Our Team</a></li>
<li><a href="https://2009.igem.org/Team:HKUST/Team">Our Team</a></li>
<li><a href="https://2009.igem.org/Team:HKUST/Project">Project description</a></li>
<li><a href="https://2009.igem.org/Team:HKUST/Project">Project description</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Background">Background</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Experiment">Experimental design</a></li>
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<li> Odorant sensoring </a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/View1">Overview</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Back1">Background</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Group1">Experimental design</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Part1">Parts design</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Result1">Experimental result</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Future1">Future work</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Ref1">Reference</a></li>
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<li> Attranctant production</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/View3">Overview</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Back3">Background</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Group3">Experimental design</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Part3">Parts design</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Result3">Experimental result</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Future3">Future work</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Ref3">Reference</a></li>
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<li>Toxin production</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/View4">Overview</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Back4">Background</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Group4">Experimental design</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Part4">Parts design</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Result4">Experimental result</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Future4">Future work</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Ref4">Reference</a></li>
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<li>Resources</a></li>
<li><a href="https://2009.igem.org/Team:HKUST/Lab Notebook">Lab Notebook</a></li>
<li><a href="https://2009.igem.org/Team:HKUST/Lab Notebook">Lab Notebook</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Result">Experimental result</a></li>
 
<li><a href="https://2009.igem.org/Team:HKUST/Parts">Parts Submitted </a></li>
<li><a href="https://2009.igem.org/Team:HKUST/Parts">Parts Submitted </a></li>
<li><a href="https://2009.igem.org/Team:HKUST/Protocols">Protocol list</a></li>
<li><a href="https://2009.igem.org/Team:HKUST/Protocols">Protocol list</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Resourses">Other resources</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Resourses">Other resources</a></li>
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<li><a href="https://2009.igem.org/Team:HKUST/Future">Future plan</a></li>
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</ul>
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<div class="contentxx">
<div class="contentxx">
<h3>Welcome</h3>
<h3>Welcome</h3>
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<p>Attractant production and reporter Construct</p>
 
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<p>The attractant production pathway contains three parts, which are FUS1 promoter, ARO9 gene and FUS1 terminator. These three genes are first derived through PCR from yeast genome and then cloned into PRS426 yeast expression vector for further functional assay. </p>
 
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<p>The reporter construct also contains three parts, which are FUS1 promoter, EGFP gene and FUS1 terminator. These three genes are first derived through PCR and then cloned into PRS426 yeast expression vector for further functional assay.</p>
 
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<a href="http://www.freewebsitetemplates.com"><img src="http://igem2009hkust.fileave.com/wiki/Group3/Gp3 design1.jpg " width=550; height=350 /></a>
 
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<a href="http://www.freewebsitetemplates.com"><img src="http://igem2009hkust.fileave.com/wiki/Group3/Gp3 design2.jpg " width=550; height=350 /></a>
 
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<p>I. Primer Design</p>
 
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<p>We have designed several sets of primers for our construction, which are listed in Table 1. These mainly consist of primers for FUS1 promoter amplification, EGFP reporter amplification, ARO9 gene amplification and FUS1 terminator amplification. Primer statistics are calculated using NetPrimer.</p>
 
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<p>Table 1  Primer sequences designed for the constructions</p>
 
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<a href="http://www.freewebsitetemplates.com"><img src="http://igem2009hkust.fileave.com/wiki/Group3/Gp3 tablePrimer.jpg " width=550; height=700 /></a>
 
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<p>*Note:</p>
 
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<p> Restriction sites are highlighted in yellow.</p>
 
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<p>II. PCR</p>
 
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<p>Three out of four genes, FUS1 promoter, FUS1 terminator and ARO9 gene are directly amplified out from yeast genomic DNA (strain YPH501). The other gene, EGFP gene, is amplified from plasmid YTK-6/Tpi/EGFP.</p>
 
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<p>III. Cloning</p>
 
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<p>After the all the fragments are successfully derived through PCR, standard cloning procedures are followed to construct an integrated expression vector. </p>
 
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<p>The PRS426 yeast expression vector is used in the expression of our construction. The FUS1 promoter is cloned into the multicloning site via Sac I and Not I digest. The ARO9 gene and the EGFP gene are cloned via blunt-end Sma I digest. FUS1 terminator is cloned via Hind III and Xho I digest.</p>
 
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<a href="http://www.freewebsitetemplates.com"><img src="http://igem2009hkust.fileave.com/wiki/Group3/Gp3 pRS426-constructed.jpg  " width=550; height=350 /></a>
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<p>Construction of Attractant production and Reporter pathway</p>
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<a href="http://www.freewebsitetemplates.com"><img src="http://igem2009hkust.fileave.com/wiki/Group3/Gp3 pRS426.jpg " width=550; height=350 /></a>
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  To functionally express the yeast ARO9 gene and EGFP gene, we have designed a reporter and an attractant production constructs. Based on the fact that yeast endogenous FUS1 promoter can sense the signal generated by the receptor, and the yeast endogenous FUS1 terminator can stop the transcription activated by the promoter, we have designed such a pathway that puts ARO9 gene (with the original promoter deleted) and EGFP gene under the control of the FUS1 promoter. We have also have control constructs for later experiments. The whole system is cloned into the multiple cloning site of the pRS426 yeast expression vector. </p>
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&nbsp; (1) pRS426-FUS1P-ARO9-FUS1T, which is ARO9 gene under the control of FUS1 promoter, cloned into the plasmid pRS426.</p>
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&nbsp; (2) pRS426-FUS1P-EGFP-FUS1T, which is EGFP gene under the control of FUS1 promoter, cloned into the plasmid pRS426.</p>
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&nbsp; (3) pRS426-EGFP, which is EGFP gene without the FUS1 promoter, cloned into  the plasmid pRS406. </p>
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Figure 3. Attractant, reporter and control constructs</p>
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<p>Test of the Reporter System </p>
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The yeast strain YPH501 with ARO9 gene deleted would be transformed with pRS426-FUS1P-EGFP-FUS1T, pRS426-EGFP, respectively. After α factor binding, we would expect to see that the MAPK pathway is activated and then the downstream FUS1-promotor-driven expression of GFP. The expression of GFP could be viewed by fluorescence microscopy. </p>
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Table 1 Reporter functional assay and expected results. (a) is the YPH501 strain deleted with ARO9 gene and transformed with pRS426-FUS1P-EGFP-FUS1T; (b) is the same strain transformed with pRS426-EGFP. </p>
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<p>Attractant production test</p>
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Second we will test our attractant production pathway and the attractiveness towards Drosophilae using the Cage Bioassays  method given by J. Zhu, et al, 2003.(Figure 4) </p>
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Figure 4, The cage bioassay to show the attractant effect. </p>
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By comparing these six conditions, we can decide whether the attractant pathway under the FUS1 promoter can response to signals generated by the receptor and can effectively produce attractant molecules (table 2) . </p>
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Table 2. Different traps and expected results</p>
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<p>Further characterization of the Attractant production pathway function</p>
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  To further characterize the attractant production pathway function, we can do the following assays. <br>
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  First, we can use the HPLC or some other analytical chemical methods to analyze the attractant concentration in the yeast extract and find the best attractant concentration towards Drosophilae. <br>
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  Second, we can change the strain of the yeast to test the attractiveness differences between strains and find the best strain for attractant production. </p>
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                </div>
                </div>

Revision as of 02:25, 10 October 2009

Salt and Soap template

Welcome

Construction of Attractant production and Reporter pathway

To functionally express the yeast ARO9 gene and EGFP gene, we have designed a reporter and an attractant production constructs. Based on the fact that yeast endogenous FUS1 promoter can sense the signal generated by the receptor, and the yeast endogenous FUS1 terminator can stop the transcription activated by the promoter, we have designed such a pathway that puts ARO9 gene (with the original promoter deleted) and EGFP gene under the control of the FUS1 promoter. We have also have control constructs for later experiments. The whole system is cloned into the multiple cloning site of the pRS426 yeast expression vector.

  (1) pRS426-FUS1P-ARO9-FUS1T, which is ARO9 gene under the control of FUS1 promoter, cloned into the plasmid pRS426.

  (2) pRS426-FUS1P-EGFP-FUS1T, which is EGFP gene under the control of FUS1 promoter, cloned into the plasmid pRS426.

  (3) pRS426-EGFP, which is EGFP gene without the FUS1 promoter, cloned into the plasmid pRS406.

Figure 3. Attractant, reporter and control constructs

Test of the Reporter System

The yeast strain YPH501 with ARO9 gene deleted would be transformed with pRS426-FUS1P-EGFP-FUS1T, pRS426-EGFP, respectively. After α factor binding, we would expect to see that the MAPK pathway is activated and then the downstream FUS1-promotor-driven expression of GFP. The expression of GFP could be viewed by fluorescence microscopy.

Table 1 Reporter functional assay and expected results. (a) is the YPH501 strain deleted with ARO9 gene and transformed with pRS426-FUS1P-EGFP-FUS1T; (b) is the same strain transformed with pRS426-EGFP.

Attractant production test

Second we will test our attractant production pathway and the attractiveness towards Drosophilae using the Cage Bioassays method given by J. Zhu, et al, 2003.(Figure 4)

Figure 4, The cage bioassay to show the attractant effect.

By comparing these six conditions, we can decide whether the attractant pathway under the FUS1 promoter can response to signals generated by the receptor and can effectively produce attractant molecules (table 2) .

Table 2. Different traps and expected results

Further characterization of the Attractant production pathway function

To further characterize the attractant production pathway function, we can do the following assays.
First, we can use the HPLC or some other analytical chemical methods to analyze the attractant concentration in the yeast extract and find the best attractant concentration towards Drosophilae.
Second, we can change the strain of the yeast to test the attractiveness differences between strains and find the best strain for attractant production.

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