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Team:IBB Pune/Modeling - Revision history
2024-03-28T18:26:35Z
Revision history for this page on the wiki
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http://2009.igem.org/wiki/index.php?title=Team:IBB_Pune/Modeling&diff=160793&oldid=prev
Samitwatve at 00:03, 22 October 2009
2009-10-22T00:03:43Z
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p><span style="font-weight:bold; font-size:200%; color:#<del class="diffchange diffchange-inline">6600FF</del>;">Modelling</span></p></html></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p><span style="font-weight:bold; font-size:200%; color:#<ins class="diffchange diffchange-inline">006600</ins>;">Modelling</span></p></html></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>The aim of the modelling aspect of our project is to develop simulations that would enable us to predict the behavior of the export tag with the Snowdrift Game as the backdrop. </p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>The aim of the modelling aspect of our project is to develop simulations that would enable us to predict the behavior of the export tag with the Snowdrift Game as the backdrop. </p></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Project 1- A Model Of The Snowdrift Game</span></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Project 1- A Model Of The Snowdrift Game</span></div></td></tr>
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Samitwatve
http://2009.igem.org/wiki/index.php?title=Team:IBB_Pune/Modeling&diff=153775&oldid=prev
Samitwatve at 20:17, 21 October 2009
2009-10-21T20:17:41Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This model is for a Single iteration of the experiment i.e. the culture is initiated in shaker flask and allowed to grow. In order to find ESS or stable equilibria, we will have to repeatedly subculture the cells under similar conditions, by replacing the medium or supplying fresh medium. In such a setup, the input for the next cycle of experiments will be the output of the previous cycle of experiments. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This model is for a Single iteration of the experiment i.e. the culture is initiated in shaker flask and allowed to grow. In order to find ESS or stable equilibria, we will have to repeatedly subculture the cells under similar conditions, by replacing the medium or supplying fresh medium. In such a setup, the input for the next cycle of experiments will be the output of the previous cycle of experiments. </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><span style="font-weight:bold; font-size:125%; color:#<del class="diffchange diffchange-inline">FF6600</del>;"><p>Assumptions</p></span></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><span style="font-weight:bold; font-size:125%; color:#<ins class="diffchange diffchange-inline">006600</ins>;"><p>Assumptions</p></span></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>''At time t=0;''</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>''At time t=0;''</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Extracellular Enzyme conc ('''Ec''') = 0 units/ml</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Extracellular Enzyme conc ('''Ec''') = 0 units/ml</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><span style="font-weight:bold; font-size:<del class="diffchange diffchange-inline">100</del>%; color:#006600;"><p>Artificial assumptions</p></span></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><span style="font-weight:bold; font-size:<ins class="diffchange diffchange-inline">150</ins>%; color:#006600;"><p>Artificial assumptions</p></span></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*<p>Glucose is consumed by all cells. Galactose is also consumed at the same rate Gc mg/cell/min/ml.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*<p>Glucose is consumed by all cells. Galactose is also consumed at the same rate Gc mg/cell/min/ml.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*The metabolic benefit due to glucose and galactose is same.So effectively each lactose molecule gives rise to 2 glucose molecules</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*The metabolic benefit due to glucose and galactose is same.So effectively each lactose molecule gives rise to 2 glucose molecules</p></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*<p>Rate of degradation of enzyme is zero</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*<p>Rate of degradation of enzyme is zero</p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><span style="font-weight:bold; font-size:125%; color:#<del class="diffchange diffchange-inline">FF6600</del>;"><p>Model</p></span></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><span style="font-weight:bold; font-size:125%; color:#<ins class="diffchange diffchange-inline">006600</ins>;"><p>Model</p></span></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>In this Model,</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>In this Model,</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> G = G +(( 2* L* Ec* k2)-( N * Gc) .... (6)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> G = G +(( 2* L* Ec* k2)-( N * Gc) .... (6)</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><span style="font-weight:bold; font-size:125%; color:#<del class="diffchange diffchange-inline">FF6600</del>;"><p>Results</p></span></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><span style="font-weight:bold; font-size:125%; color:#<ins class="diffchange diffchange-inline">006600</ins>;"><p>Results</p></span></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Pic1.GIF |center|400px|thumbnail|Plot of lactose and glucose levels at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001 ]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Pic1.GIF |center|400px|thumbnail|Plot of lactose and glucose levels at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001 ]]</div></td></tr>
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Samitwatve
http://2009.igem.org/wiki/index.php?title=Team:IBB_Pune/Modeling&diff=145389&oldid=prev
Sharvarisathe at 14:30, 21 October 2009
2009-10-21T14:30:03Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*<p>Rate of degradation of enzyme is zero</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*<p>Rate of degradation of enzyme is zero</p></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><span style</ins>=<ins class="diffchange diffchange-inline">"font-weight:bold; font-size:125%; color:#FF6600;"><p></ins>Model<ins class="diffchange diffchange-inline"></p></span></ins></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">==</del>=Model<del class="diffchange diffchange-inline">===</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>In this Model,</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>In this Model,</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> G = G +(( 2* L* Ec* k2)-( N * Gc) .... (6)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> G = G +(( 2* L* Ec* k2)-( N * Gc) .... (6)</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><span style</ins>=<ins class="diffchange diffchange-inline">"font-weight:bold; font-size:125%; color:#FF6600;"><p></ins>Results<ins class="diffchange diffchange-inline"></p></span></ins></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">==</del>=Results<del class="diffchange diffchange-inline">===</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Pic1.GIF |center|400px|thumbnail|Plot of lactose and glucose levels at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001 ]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Pic1.GIF |center|400px|thumbnail|Plot of lactose and glucose levels at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001 ]]</div></td></tr>
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Sharvarisathe
http://2009.igem.org/wiki/index.php?title=Team:IBB_Pune/Modeling&diff=145316&oldid=prev
Sharvarisathe: /* Assumptions */
2009-10-21T14:26:14Z
<p><span class="autocomment">Assumptions</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This model is for a Single iteration of the experiment i.e. the culture is initiated in shaker flask and allowed to grow. In order to find ESS or stable equilibria, we will have to repeatedly subculture the cells under similar conditions, by replacing the medium or supplying fresh medium. In such a setup, the input for the next cycle of experiments will be the output of the previous cycle of experiments. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This model is for a Single iteration of the experiment i.e. the culture is initiated in shaker flask and allowed to grow. In order to find ESS or stable equilibria, we will have to repeatedly subculture the cells under similar conditions, by replacing the medium or supplying fresh medium. In such a setup, the input for the next cycle of experiments will be the output of the previous cycle of experiments. </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>=<del class="diffchange diffchange-inline">==</del>Assumptions<del class="diffchange diffchange-inline">===</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><span style</ins>=<ins class="diffchange diffchange-inline">"font-weight:bold; font-size:125%; color:#FF6600;"><p></ins>Assumptions<ins class="diffchange diffchange-inline"></p></span></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>''At time t=0;''</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>''At time t=0;''</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Extracellular Enzyme conc ('''Ec''') = 0 units/ml</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Extracellular Enzyme conc ('''Ec''') = 0 units/ml</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><span style="font-weight:bold; font-size:100%; color:#006600;"><p></ins>Artificial assumptions<ins class="diffchange diffchange-inline"></p></span></ins></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">'''</del>Artificial assumptions<del class="diffchange diffchange-inline">'''</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*<p>Glucose is consumed by all cells. Galactose is also consumed at the same rate Gc mg/cell/min/ml.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*<p>Glucose is consumed by all cells. Galactose is also consumed at the same rate Gc mg/cell/min/ml.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*The metabolic benefit due to glucose and galactose is same.So effectively each lactose molecule gives rise to 2 glucose molecules</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*The metabolic benefit due to glucose and galactose is same.So effectively each lactose molecule gives rise to 2 glucose molecules</p></div></td></tr>
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Sharvarisathe
http://2009.igem.org/wiki/index.php?title=Team:IBB_Pune/Modeling&diff=145021&oldid=prev
Sharvarisathe at 14:12, 21 October 2009
2009-10-21T14:12:29Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>The Lactose that remains at time 't' is given by:</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>The Lactose that remains at time <ins class="diffchange diffchange-inline">'''</ins>'t<ins class="diffchange diffchange-inline">'''</ins>' is given by:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> L = L - L * Ec * k2 .... (5)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> L = L - L * Ec * k2 .... (5)</div></td></tr>
<tr><td colspan="2" class="diff-lineno">Line 78:</td>
<td colspan="2" class="diff-lineno">Line 78:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>The net Glucose present in the medium at time 't' is given by:</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>The net Glucose present in the medium at time <ins class="diffchange diffchange-inline">'''</ins>'t<ins class="diffchange diffchange-inline">'''</ins>' is given by:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> G = G +(( 2* L* Ec* k2)-( N * Gc) .... (6)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> G = G +(( 2* L* Ec* k2)-( N * Gc) .... (6)</div></td></tr>
</table>
Sharvarisathe
http://2009.igem.org/wiki/index.php?title=Team:IBB_Pune/Modeling&diff=144996&oldid=prev
Sharvarisathe at 14:11, 21 October 2009
2009-10-21T14:11:25Z
<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 14:11, 21 October 2009</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 29:</td>
<td colspan="2" class="diff-lineno">Line 29:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>''At time t=0;''</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>''At time t=0;''</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*There are 'k' co-operators and 'N-k' defectors</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*There are <ins class="diffchange diffchange-inline">'''</ins>'k<ins class="diffchange diffchange-inline">'''</ins>' co-operators and <ins class="diffchange diffchange-inline">'''</ins>'N-k<ins class="diffchange diffchange-inline">'''</ins>' defectors</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*Medium contains 'L' mg/ml of lactose, glucose conc. (g) = 0</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*Medium contains <ins class="diffchange diffchange-inline">'''</ins>'L<ins class="diffchange diffchange-inline">'''</ins>' mg/ml of lactose, glucose conc. (g) = 0</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Culture is well mixed. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>*Culture is well mixed. </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*Extracellular Enzyme conc (Ec) = 0 units/ml</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*Extracellular Enzyme conc (<ins class="diffchange diffchange-inline">'''</ins>Ec<ins class="diffchange diffchange-inline">'''</ins>) = 0 units/ml</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Artificial assumptions'''</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Artificial assumptions'''</div></td></tr>
<tr><td colspan="2" class="diff-lineno">Line 51:</td>
<td colspan="2" class="diff-lineno">Line 51:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>In this Model,</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>In this Model,</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>1. Each co-operator secretes 'B' units of enzyme/ min and pays cost of 'c'/min </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>1. Each co-operator secretes <ins class="diffchange diffchange-inline">'''</ins>'B<ins class="diffchange diffchange-inline">'''</ins>' units of enzyme/ min and pays cost of <ins class="diffchange diffchange-inline">'''</ins>'c<ins class="diffchange diffchange-inline">'''</ins>'/min </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>2. These molecules diffuse freely through the medium </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>2. These molecules diffuse freely through the medium </div></td></tr>
</table>
Sharvarisathe
http://2009.igem.org/wiki/index.php?title=Team:IBB_Pune/Modeling&diff=144922&oldid=prev
Sharvarisathe at 14:08, 21 October 2009
2009-10-21T14:08:11Z
<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 14:08, 21 October 2009</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 66:</td>
<td colspan="2" class="diff-lineno">Line 66:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>After each min, the population of co-operators and defectors is updated depending upon their respective growth rates. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>After each min, the population of co-operators and defectors is updated depending upon their respective growth rates. </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> D(t) = D(t-1)+ r * D(t-1) <del class="diffchange diffchange-inline"> </del>.... (3) Defector population (t) </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> D(t) = D(t-1)+ r * D(t-1) <ins class="diffchange diffchange-inline"> </ins>.... (3) Defector population (t) </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> k(t) = k(t-1) + (r-c) * k(t-1) <del class="diffchange diffchange-inline"> </del>.... (4) Co-operator population (t)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> k(t) = k(t-1) + (r-c) * k(t-1) <ins class="diffchange diffchange-inline"> </ins>.... (4) Co-operator population (t)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td colspan="2" class="diff-lineno">Line 74:</td>
<td colspan="2" class="diff-lineno">Line 74:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The Lactose that remains at time 't' is given by:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The Lactose that remains at time 't' is given by:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> L = L - L * Ec * k2 <del class="diffchange diffchange-inline"> </del>.... (5)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> L = L - L * Ec * k2 <ins class="diffchange diffchange-inline"> </ins>.... (5)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td colspan="2" class="diff-lineno">Line 80:</td>
<td colspan="2" class="diff-lineno">Line 80:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The net Glucose present in the medium at time 't' is given by:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The net Glucose present in the medium at time 't' is given by:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> G = G +(( 2* L* Ec* k2)-( N * Gc) <del class="diffchange diffchange-inline"> </del>.... (6)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> G = G +(( 2* L* Ec* k2)-( N * Gc) <ins class="diffchange diffchange-inline"> </ins>.... (6)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Results===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Results===</div></td></tr>
</table>
Sharvarisathe
http://2009.igem.org/wiki/index.php?title=Team:IBB_Pune/Modeling&diff=144881&oldid=prev
Sharvarisathe at 14:06, 21 October 2009
2009-10-21T14:06:49Z
<p></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 14:06, 21 October 2009</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 66:</td>
<td colspan="2" class="diff-lineno">Line 66:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>After each min, the population of co-operators and defectors is updated depending upon their respective growth rates. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>After each min, the population of co-operators and defectors is updated depending upon their respective growth rates. </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> D(t) = D(t-1)+r*D(t-1) .... (3) Defector population (t) </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> D(t) = D(t-1)+ r * D(t-1) .... (3) Defector population (t) </div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> k(t) = k(t-1) + (r-c)*k(t-1) .... (4) Co-operator population (t)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> k(t) = k(t-1) + (r-c) * k(t-1) .... (4) Co-operator population (t)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td colspan="2" class="diff-lineno">Line 74:</td>
<td colspan="2" class="diff-lineno">Line 74:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The Lactose that remains at time 't' is given by:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The Lactose that remains at time 't' is given by:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> L=L-L*Ec*k2 .... (5)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> L = L - L * Ec * k2 .... (5)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td colspan="2" class="diff-lineno">Line 80:</td>
<td colspan="2" class="diff-lineno">Line 80:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The net Glucose present in the medium at time 't' is given by:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>The net Glucose present in the medium at time 't' is given by:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><br></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> G=G+((2*L*Ec*k2)-(N*Gc) .... (6)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> G = G +(( 2* L* Ec* k2)-( N * Gc) .... (6)</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Results===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Results===</div></td></tr>
</table>
Sharvarisathe
http://2009.igem.org/wiki/index.php?title=Team:IBB_Pune/Modeling&diff=144809&oldid=prev
Sharvarisathe: /* Results */
2009-10-21T14:03:26Z
<p><span class="autocomment">Results</span></p>
<table style="background-color: white; color:black;">
<col class='diff-marker' />
<col class='diff-content' />
<col class='diff-marker' />
<col class='diff-content' />
<tr valign='top'>
<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 14:03, 21 October 2009</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 85:</td>
<td colspan="2" class="diff-lineno">Line 85:</td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Pic1.GIF |center|400px|thumbnail|Plot of lactose and glucose levels at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001 ]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Pic1.GIF |center|400px|thumbnail|Plot of lactose and glucose levels at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001 ]]</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline"><br><br></del><br></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Pic2.GIF |center|400px|thumbnail|The population distribution at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Pic2.GIF |center|400px|thumbnail|The population distribution at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline"><br><br></del><br></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Pic3.gif |center|400px|thumbnail|The Cooperator to defector ratio at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001 ]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Pic3.gif |center|400px|thumbnail|The Cooperator to defector ratio at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001 ]]</div></td></tr>
</table>
Sharvarisathe
http://2009.igem.org/wiki/index.php?title=Team:IBB_Pune/Modeling&diff=144791&oldid=prev
Sharvarisathe: /* Results */
2009-10-21T14:02:43Z
<p><span class="autocomment">Results</span></p>
<table style="background-color: white; color:black;">
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<td colspan='2' style="background-color: white; color:black;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black;">Revision as of 14:02, 21 October 2009</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Pic1.GIF |center|400px|thumbnail|Plot of lactose and glucose levels at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001 ]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Pic1.GIF |center|400px|thumbnail|Plot of lactose and glucose levels at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001 ]]</div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Image:Pic2.GIF |center|400px|thumbnail|The population distribution ]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Image:Pic2.GIF |center|400px|thumbnail|The population distribution <ins class="diffchange diffchange-inline">at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001</ins>]]</div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[Image:Pic3.gif |center|400px|thumbnail|The Cooperator to defector ratio ]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[Image:Pic3.gif |center|400px|thumbnail|The Cooperator to defector ratio <ins class="diffchange diffchange-inline">at k2=1, Gc = 0.0001 mg/cell/min, R=0.99, c=0.001 </ins>]]</div></td></tr>
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Sharvarisathe