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Team:KULeuven/Integrated Model/Integrated Model - Revision history
2024-03-28T18:47:56Z
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Bart Bosmans at 18:09, 19 October 2009
2009-10-19T18:09:05Z
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">document optained using: iGEM2008/Team:KULeuven, Maarten Breckpot [https://2008.igem.org/Team:KULeuven/Software/Simbiology2LaTeX Simbiology2LaTeX Toolbox]</ins></div></td></tr>
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Bart Bosmans
http://2009.igem.org/wiki/index.php?title=Team:KULeuven/Integrated_Model/Integrated_Model&diff=119902&oldid=prev
Bart Bosmans at 18:07, 19 October 2009
2009-10-19T18:07:11Z
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Bart Bosmans
http://2009.igem.org/wiki/index.php?title=Team:KULeuven/Integrated_Model/Integrated_Model&diff=119895&oldid=prev
Bart Bosmans at 18:06, 19 October 2009
2009-10-19T18:06:12Z
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">[[File</del>:ODEs.pdf<del class="diffchange diffchange-inline">]]</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><html></ins></div></td></tr>
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Bart Bosmans
http://2009.igem.org/wiki/index.php?title=Team:KULeuven/Integrated_Model/Integrated_Model&diff=119864&oldid=prev
Bart Bosmans at 18:00, 19 October 2009
2009-10-19T18:00:31Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===ODE's===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===ODE's===</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>[[<del class="diffchange diffchange-inline">Image</del>:ODEs.pdf]]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>[[<ins class="diffchange diffchange-inline">File</ins>:ODEs.pdf]]</div></td></tr>
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Bart Bosmans
http://2009.igem.org/wiki/index.php?title=Team:KULeuven/Integrated_Model/Integrated_Model&diff=119858&oldid=prev
Bart Bosmans at 17:59, 19 October 2009
2009-10-19T17:59:37Z
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Bart Bosmans
http://2009.igem.org/wiki/index.php?title=Team:KULeuven/Integrated_Model/Integrated_Model&diff=81113&oldid=prev
Deepstar at 11:02, 1 October 2009
2009-10-01T11:02:32Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Team:KULeuven/Common2/BeginHeader}}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Team:KULeuven/Common2/BeginHeader}}</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>{{Team:KULeuven/Common/<del class="diffchange diffchange-inline">SubMenu_Project</del>}}</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>{{Team:KULeuven/Common/<ins class="diffchange diffchange-inline">SubMenu_Intergated_Model</ins>}}</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>__NOTOC__</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>__NOTOC__</div></td></tr>
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Deepstar
http://2009.igem.org/wiki/index.php?title=Team:KULeuven/Integrated_Model/Integrated_Model&diff=81110&oldid=prev
Deepstar: Team:KULeuven/Integraded Model/Integraded Model moved to Team:KULeuven/Integrated Model/Integrated Model
2009-10-01T11:00:34Z
<p><a href="/Team:KULeuven/Integraded_Model/Integraded_Model" class="mw-redirect" title="Team:KULeuven/Integraded Model/Integraded Model">Team:KULeuven/Integraded Model/Integraded Model</a> moved to <a href="/Team:KULeuven/Integrated_Model/Integrated_Model" title="Team:KULeuven/Integrated Model/Integrated Model">Team:KULeuven/Integrated Model/Integrated Model</a></p>
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Deepstar
http://2009.igem.org/wiki/index.php?title=Team:KULeuven/Integrated_Model/Integrated_Model&diff=78895&oldid=prev
Bvanpary: /* Simulations */
2009-09-28T19:00:32Z
<p><span class="autocomment">Simulations</span></p>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">= Simulations =</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">In order to check the set-up of the model and to estimate the behaviour of the real bacterium, we performed a number of simulations. </del></div></td><td colspan="2"> </td></tr>
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Bvanpary
http://2009.igem.org/wiki/index.php?title=Team:KULeuven/Integrated_Model/Integrated_Model&diff=78894&oldid=prev
Bvanpary: /* Biological implications */
2009-09-28T19:00:23Z
<p><span class="autocomment">Biological implications</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>It's then hoped that the controller will also stabilize the real system as it's assumed to be similar to the modelled system.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>It's then hoped that the controller will also stabilize the real system as it's assumed to be similar to the modelled system.</div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">=Biological implications=</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">Because the controller has to be implemented in 'biological technology', we choose the simplest possible design of </del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">controller, the proportional controller.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">The gain in the feedback loop can be adjusted by the use of low/high copy plasmids for the genes involved in the transduction of the signal in the feedback loop.</del></div></td><td colspan="2"> </td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Simulations =</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>= Simulations =</div></td></tr>
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Bvanpary
http://2009.igem.org/wiki/index.php?title=Team:KULeuven/Integrated_Model/Integrated_Model&diff=78893&oldid=prev
Bvanpary: /* Integrated model */
2009-09-28T19:00:04Z
<p><span class="autocomment">Integrated model</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Fullmodel.jpg|750px|center|thumb|Biological model of our system (Simbiology)]]</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>[[Image:Fullmodel.jpg|750px|center|thumb|Biological model of our system (Simbiology)]]</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">Because we want to optimize the design of the feedback loop in our system, we developed a more abstract block scheme of the bacteria. It shows each component as a block performing a specific task. The diagram is used to develop some theories about the performance of the feedback loop.</del></div></td><td colspan="2"> </td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">[[Image:Blockmodel.jpg|750px|center|thumb|Block model of the system (Simulink)]]</del></div></td><td colspan="2"> </td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=Control theory=</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>=Control theory=</div></td></tr>
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