Team:TUDelft/Modeling

From 2009.igem.org

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(Conjugation)
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We would like to give credit to the [https://2008.igem.org/Team:Bologna/Modeling Bologna '08 team] and [https://2008.igem.org/Team:UNIPV-Pavia/Modeling UNIPV-Pavia '08 team], who's project was useful in determining our own equations.
We would like to give credit to the [https://2008.igem.org/Team:Bologna/Modeling Bologna '08 team] and [https://2008.igem.org/Team:UNIPV-Pavia/Modeling UNIPV-Pavia '08 team], who's project was useful in determining our own equations.
='''Conjugation'''=
='''Conjugation'''=
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[http://www3.interscience.wiley.com/journal/118837812/abstract?CRETRY=1&SRETRY=0 A model for bacterial conjugal gene transfer on solid surfaces] and [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T2K-4PT7X7G-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=fcacb99317376ced3df42e7e8178fc78 Rule-based modelling of conjugative plasmid transfer and incompatibility]
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Using the paper "[http://www3.interscience.wiley.com/journal/118837812/abstract?CRETRY=1&SRETRY=0 A model for bacterial conjugal gene transfer on solid surfaces]", we established the assumptions and parameteres that would be needed for the .
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{{Template:TUDelftiGEM2009_end}}
{{Template:TUDelftiGEM2009_end}}

Revision as of 09:38, 22 July 2009


Delay Device

Negative Feedforward.jpg
Figure 1: Negative Feedforward model
Riboregulator delay.jpg
Figure 2: Riboregulator model

Mathematical Modeling

The Negative Feedforward model shown above can be expressed with the following set of ODEs (ordinary differential equations):
Negative feedforward ODEs 2.jpg

The Riboregulator model shown above can be expressed with the following set of ODEs:
Riboregulator ODEs.jpg

The symbols in this system of equations are found in the table below:
Symbols table.jpg

We would like to give credit to the Bologna '08 team and UNIPV-Pavia '08 team, who's project was useful in determining our own equations.

Conjugation

Using the paper "A model for bacterial conjugal gene transfer on solid surfaces", we established the assumptions and parameteres that would be needed for the .