Team:UC Davis/Contacts References

From 2009.igem.org

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style="font-family: Helvetica,Arial,sans-serif;">References:</small></span></u><b><u><span
style="font-family: Helvetica,Arial,sans-serif;">References:</small></span></u><b><u><span
style="font-size: 24pt; font-family: &quot;Showcard Gothic&quot;;"><o:p></o:p></span></u></b></small></div>
style="font-size: 24pt; font-family: &quot;Showcard Gothic&quot;;"><o:p></o:p></span></u></b></small></div>
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<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
-
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">1.<b>
+
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 +
style="font-weight: bold;">1.</span><b>
Ze-Chun Yuan, Pu Liu, Panatda
Ze-Chun Yuan, Pu Liu, Panatda
-
Saenkham, Kathleen Kerr, and Eugene W. Nester.</b>2007, Transcriptome
+
Saenkham, Kathleen Kerr, and Eugene W. Nester (</b>2007). Transcriptome
Profiling
Profiling
-
and Fuctional Analysis of Agrobacterium tumefaciens Reveals a General
+
and Fuctional Analysis of <span style="font-style: italic;">Agrobacterium
 +
tumefaciens</span> Reveals a General
Conserved
Conserved
-
Respomse to Acidic Conditions (pH 5.5) and a Complex Acid-Mediated
+
Response to Acidic Conditions (pH 5.5) and a Complex Acid-Mediated
Signaling
Signaling
-
Involved in Agrobacterium-Plant Interactions.<br>
+
Involved in <span style="font-style: italic;">Agrobacterium</span>-Plant
-
2<b>.Luoping Li, Yonghui Jia, Qingming Hou, Trevor C. Charles, Eugene
+
Interactions. <span style="text-decoration: underline;">Journal of
 +
Bacteriology.</span> Jan. 208, p. 494-507.<br>
 +
</span></small></p>
 +
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 +
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 +
style="font-weight: bold;">2</span><b>.Luoping Li, Yonghui Jia,
 +
Qingming Hou, Trevor C. Charles, Eugene
W.
W.
-
Nester, and Shen Q. Pan. </b>2002,A global pH sensor: Agrobacterium
+
Nester, and Shen Q. Pan. (</b>2002). A global pH sensor: Agrobacterium
sensor
sensor
protein ChvG regulates acid-inducible genes on its two chromosomes and
protein ChvG regulates acid-inducible genes on its two chromosomes and
Ti
Ti
-
plasmid.<br>
+
plasmid. <span style="text-decoration: underline;">PNAS</span>.
-
3.<b> <small><big>Nicholas J. Mantis and Stephen C. Winans.</big></small></b>1993,
+
(99)19.12369-12374<br>
 +
</span></small></p>
 +
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 +
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 +
style="font-weight: bold;">3.</span><b><span style="font-weight: bold;">
 +
</span><small><big>Nicholas J. Mantis and Stephen C. Winans.</big></small></b>
 +
(1993),
The
The
Chromosomal
Chromosomal
-
Response Regulatory Gene chvI of Agrobacterium tumefaciens Complements
+
Response Regulatory Gene <span style="font-style: italic;">chvI</span>
 +
of <span style="font-style: italic;">Agrobacterium tumefaciens </span>Complements
an
an
-
Escherichia coli<br>
+
<span style="font-style: italic;">Escherichia coli</span><br>
-
phoB Mutation and Is Required for Virulence.<br>
+
<span style="font-style: italic;">phoB</span> Mutation and Is Required
-
4.<b> Trevor C. Charles and Eugene W. Nester.</b>1993<b>,</b>A
+
for Virulence. <span style="text-decoration: underline;">J.
 +
Microbiology.</span> Oct. 1993, p.6626-6636.<br>
 +
</span></small></p>
 +
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 +
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 +
style="font-weight: bold;">4.</span><b> Trevor C. Charles and Eugene
 +
W. Nester.</b> (1993)<span style="font-weight: bold;">.</span> A
Chromosomally
Chromosomally
Encoded Two-Component Sensory Transduction System Is Required for
Encoded Two-Component Sensory Transduction System Is Required for
Virulence of
Virulence of
-
Agrobacterium tumefaciens.<br>
+
<span style="font-style: italic;">Agrobacterium tumefaciens. </span><span
-
5.<b>Jeffrey M. Skerker, Barrett S. Perchuk, Albert Siryaporn, Emma A.
+
style="text-decoration: underline;">J. Bacteriology</span>. Oct. 1993,
 +
p. 6614-6625.<br>
 +
</span></small></p>
 +
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 +
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">5.<b>Jeffrey
 +
M. Skerker, Barrett S. Perchuk, Albert Siryaporn, Emma A.
Lubin,
Lubin,
-
Orr Ashenberg, Mark Goulian and Michael T. Laub.2008,</b>Rewiring the
+
Orr Ashenberg, Mark Goulian and Michael T. Laub. (2008). </b>Rewiring
-
Specificity of Two-Component Signal Transduction Systems<o:p></o:p></span><br>
+
the
-
<span style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">6.</span><b><span
+
Specificity of Two-Component Signal Transduction Systems. <o:p></o:p></span><br>
 +
<span style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
 +
<span style="font-weight: bold;">6</span>.</span><b><span
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">Takashi
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">Takashi
-
Aoyama, Mituru Takanami,Kozo Makino, and Atsuhiro
+
Aoyama, Mituru Takanami, Kozo Makino, and Atsuhiro
Oka</span></b><b><span
Oka</span></b><b><span
-
style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">.</span></b><span
+
style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">. </span></b><span
-
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">1991</span><span
+
style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">(</span><span
-
style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">,</span><span
+
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">1991)</span><span
 +
style="font-size: 13.5pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">. </span><span
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">Cross-talk
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">Cross-talk
between the virulence and
between the virulence and
-
phosphate regulons of Agrobacterium tumefaciens caused by an unusual
+
phosphate regulons of <span style="font-style: italic;">Agrobacterium
 +
tumefaciens </span>caused by an unusual
interaction of the transcriptional activator with a regulatory DNA
interaction of the transcriptional activator with a regulatory DNA
-
element.</span><span
+
element. <span style="text-decoration: underline;">Mol. Gen. Genet</span>.
 +
(1991) 227, p. 385-390.</span><span
style="font-size: 18pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p></span><br>
style="font-size: 18pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p></span><br>
<span
<span
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">7.<b>
+
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
 +
<span style="font-weight: bold;">7.</span><b>
Edwin van Bloois. Remko T. Winter. Dick B. Janssen, Marco W. Fraaije.
Edwin van Bloois. Remko T. Winter. Dick B. Janssen, Marco W. Fraaije.
2009</b>,
2009</b>,
Line 118: Line 150:
periplasm or cell surface of <i>Escherichia coli</i> and its
periplasm or cell surface of <i>Escherichia coli</i> and its
application in
application in
-
whole-cell biocatalysis<o:p></o:p><br>
+
whole-cell biocatalysis. (2009). <span
-
8.<b>Dariusz
+
style="text-decoration: underline;">Appl. Microbiol. Biotechnol</span>.
 +
83. p. 679-687.<o:p></o:p><br>
 +
</span></small></p>
 +
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 +
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 +
style="font-weight: bold;">8</span>.<b>Dariusz
Stepniak, Liesbeth Spaenij-Dekking, Cristina Mitea, Martine
Stepniak, Liesbeth Spaenij-Dekking, Cristina Mitea, Martine
-
Moester,Arnoud de
+
Moester, Arnoud de
-
Ru, Renee Baak-Pablo, Peter van Veelen, Luppo Edens and Frits Koning.</b>(2006),
+
Ru, Renee Baak-Pablo, Peter van Veelen, Luppo Edens and Frits Koning. </b>(2006).
Highly efficient gluten degradation with a newly identifies prolyl
Highly efficient gluten degradation with a newly identifies prolyl
endoprotease:
endoprotease:
-
implications for celiac disease<o:p></o:p></span><br>
+
implications for celiac disease. <span
 +
style="text-decoration: underline;">Am J Physiol Gastrointest Liver
 +
Physiol</span>. 291: G621-G629, 2006.<o:p></o:p></span><br>
<b><span
<b><span
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">9.Heung-Chae
+
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
 +
9. Heung-Chae
Junge, Joon-Hyun Park, Seung-Hwan Park, Jean-Michel Lebeault, and
Junge, Joon-Hyun Park, Seung-Hwan Park, Jean-Michel Lebeault, and
Jae-Gu Pan</span></b><span
Jae-Gu Pan</span></b><span
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">.(1998),Expression
+
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">.
 +
(1998). Expression
of carboxymethylcellulase
of carboxymethylcellulase
-
on the Surface of Escerichia coli using Pseudomonas syringae ice
+
on the Surface of <span style="font-style: italic;">Escerichia coli</span>
 +
using <span style="font-style: italic;">Pseudomonas syringae</span>
 +
ice
nucleation
nucleation
-
protein<br>
+
protein. <span style="text-decoration: underline;">Enzyme and
-
10.<b> Michael Klose, Anja St&ouml;riko, York-Dieter Stierhof, Ingrid
+
Microbial Technology</span>. 22: 348-354, 1998.<br>
 +
</span></small></p>
 +
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 +
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 +
style="font-weight: bold;">10.</span><b> Michael Klose, Anja
 +
St&ouml;riko, York-Dieter Stierhof, Ingrid
Hindennach,
Hindennach,
-
Bettina Mutschler, and Ulf Henning</b> .(1993), Membrane Assembly of
+
Bettina Mutschler, and Ulf Henning</b>. (1993). Membrane Assembly of
the Outer
the Outer
-
Membrane Protein OmpA of Escherichia coli<br>
+
Membrane Protein OmpA of <span style="font-style: italic;">Escherichia
-
11.<b>The Celiac Site</b>.2009,
+
coli. </span><span style="text-decoration: underline;">Journal of
 +
Biological Chemistry.</span> (268) 34, pp. 25664-25670.<br>
 +
</span></small></p>
 +
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 +
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 +
style="font-weight: bold;">11.</span><b>The Celiac Site</b>. (2009).
http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br>
http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br>
-
12.<b>Jonathan Gass, Michael T. Bethune, Matthew Siegel, Andrew
+
</span></small></p>
 +
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 +
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 +
style="font-weight: bold;">12.</span><b>Jonathan Gass, Michael T.
 +
Bethune, Matthew Siegel, Andrew
Spencer, and
Spencer, and
-
Chaitan Khosla</b>.2007,Combination Enzyme Therapy for Gastric
+
Chaitan Khosla</b>. (2007). Combination Enzyme Therapy for Gastric
Digestion of
Digestion of
-
Dietary Gluten in Patients With Celiac Sprue<br>
+
Dietary Gluten in Patients With Celiac Sprue. <span
-
13.<b>Roland Freud, Michael Klose, and Ulf Henning.(</b>1989), Export
+
style="text-decoration: underline;">Gastroenterology</span>. 2007;
 +
133: 472-480.<br>
 +
</span></small></p>
 +
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 +
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 +
style="font-weight: bold;">13.</span><b>Roland Freud, Michael Klose,
 +
and Ulf Henning.</b> (1989). Export
and
and
-
Sorting of the Escherichia coli Outer Membrane Protein OmpA<br>
+
Sorting of the Escherichia coli Outer Membrane Protein OmpA. <span
-
14.<b>National Digestive Diseases Information Clearinghouse(NDDIC)</b>.September
+
style="text-decoration: underline;">Journal of Bioenergetics and
-
2008, http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br style="">
+
Biomembranes</span>. 22 (3). pp.441-449.<br>
 +
</span></small></p>
 +
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 +
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 +
style="font-weight: bold;">14.</span><b>National Digestive Diseases
 +
Information Clearinghouse (NDDIC)</b>. September
 +
2008. http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br>
 +
</span></small></p>
 +
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
 +
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 +
style="font-weight: bold;">15. </span></span><small><font
 +
face="Times New Roman" size="5"><small><small><b>Se Whan Park, Moon
 +
Gyu Chung, Hwa Young Lee, Jeong Yoon Kim, and Young Ha Rhee. </b>
 +
(2008). Stable expression and secretion of the polyhydroxybutyrate
 +
depolymerase of <i>Paucimonas lemoignei </i>in <i>Escherichia
 +
coli.&nbsp; </i>
 +
<u>J. Microbiology.</u> 46(6). pp. 662-669.&nbsp;&nbsp; </small></small></font></small></small><small><span
 +
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
 +
style="font-weight: bold;"></span><br style="">
</span></small></p>
</span></small></p>
<hr style="width: 100%; height: 2px;">
<hr style="width: 100%; height: 2px;">
-
<p style="color: rgb(0, 0, 0); text-align: center;" class="MsoNormal"><small><span
+
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"></span></small><small><b><u><span
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"></span></small><small><b><u><span
style="font-size: 22pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><small
style="font-size: 22pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><small
-
style="font-style: italic; font-family: Helvetica,Arial,sans-serif;">Additional
+
style="font-style: italic; font-family: Helvetica,Arial,sans-serif;"></small></span></u></b></small><span
-
Resources:</small><o:p></o:p></span></u></b><br>
+
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;; color: rgb(0, 0, 0);"><br
-
</small></p>
+
style="">
-
<div style="text-align: left;"><small> </small></div>
+
-
<div style="text-align: left;"><small> </small></div>
+
-
<div style="text-align: left;"><small> </small></div>
+
-
<div style="text-align: left;"><small> </small></div>
+
-
<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
+
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">1.<b>
+
-
Matthew J. Armstrong, Gerry G. Robins and Peter D. Howdle</b>.(2009),
+
-
Recent
+
-
advances in coelic disease<br>
+
-
2. <b>Chia-Hwa Chang and Stephen C. Winans</b>.1996,Resection and
+
-
mutagenesis
+
-
of the acid pH-inducible P2 promoter of the Agrobacterium tumefaciens
+
-
virG
+
-
gene.<br>
+
-
3.<b>Wei Xin, Soo-Young Wanda, Yuhua Li, Shifeng Wang, Hua
+
-
Mo, and Roy
+
-
Curtiss</b>. 2008, Analysis of Type second secretion of Recombinant
+
-
Pnuemococcal
+
-
PspA and PspC in a Salmonella enterica Serovar Typhimurium Vaccine with
+
-
Regulated
+
-
Delayed Antigen Synthesis.<o:p></o:p><br>
+
-
4.<b>H.
+
-
Sletta, A. T&oslash;ndervik,S. Hakv&aring;g,T. E. Vee Aune, A. Nedal,R.
+
-
Aune,G. Evensen, S.
+
-
Valla,T. E. Ellingsen, and T. Brautaset.</b> 2006,The Presence of
+
-
N-Terminal
+
-
Secretion Signal Sequences Leads to Strong Stimulation of the Total
+
-
Expression
+
-
Levels of Three Tested Medically Important Proteins during
+
-
High-Cell-Density
+
-
Cultivations of <i>Escherichia coli<br>
+
-
</i>5<b>.Yong-Chul&nbsp;Jung,Yunrong&nbsp;Gu, Donghai&nbsp;Wu and
+
-
Shouguang&nbsp;Jin.</b>2004,
+
-
Mutants of Agrobacterium tumefaciens virG Gene That Activate
+
-
Transcription of
+
-
vir Prometer in Escherichia coli.<br>
+
-
6.<b>Stephen C. Winans</b>.1990,Transcriptional Induction of an
+
-
Agrobacterium
+
-
Regulatory Gene at Tandem Promoters by Plant-Released Phenolic
+
-
Compounds,
+
-
Phosphate Stravation, and Acidic Growth Media<br style="">
+
-
<!--[if !supportLineBreakNewLine]--></span>7.<b><span
+
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">
+
-
Xu,X. Q. &amp; Pan, S. Q. </span></b><span
+
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">(2000),An
+
-
Agrobacterium Catalase is a virulence factor involved in tumorigenesis<o:p></o:p></span></small><span
+
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;; color: rgb(0, 0, 0);"><small>8.<big><b>
+
-
Y. H. Jia, L.P. Li, Q. M. Hou, Shen
+
-
Q. Pan</b>.(2001),An
+
-
Agrobacterium gene involved in tumorigenesis encodes an outer membrane
+
-
protein
+
-
exposed on the bacterial cell surface<br>
+
-
</big></small><br style="">
+
</span></p>
</span></p>
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<span style="color: rgb(255, 255, 0);"> </span></div>
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Revision as of 05:02, 21 October 2009

 

Contacts/References:


References:

1. Ze-Chun Yuan, Pu Liu, Panatda Saenkham, Kathleen Kerr, and Eugene W. Nester (2007). Transcriptome Profiling and Fuctional Analysis of Agrobacterium tumefaciens Reveals a General Conserved Response to Acidic Conditions (pH 5.5) and a Complex Acid-Mediated Signaling Involved in Agrobacterium-Plant Interactions. Journal of Bacteriology. Jan. 208, p. 494-507.

2.Luoping Li, Yonghui Jia, Qingming Hou, Trevor C. Charles, Eugene W. Nester, and Shen Q. Pan. (2002). A global pH sensor: Agrobacterium sensor protein ChvG regulates acid-inducible genes on its two chromosomes and Ti plasmid. PNAS. (99)19.12369-12374

3. Nicholas J. Mantis and Stephen C. Winans. (1993), The Chromosomal Response Regulatory Gene chvI of Agrobacterium tumefaciens Complements an Escherichia coli
phoB Mutation and Is Required for Virulence. J. Microbiology. Oct. 1993, p.6626-6636.

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