Team:UC Davis/Contacts References

From 2009.igem.org

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Involved in <span style="font-style: italic;">Agrobacterium</span>-Plant
Involved in <span style="font-style: italic;">Agrobacterium</span>-Plant
Interactions. <span style="text-decoration: underline;">Journal of
Interactions. <span style="text-decoration: underline;">Journal of
-
Bacteriology.</span> Jan. 208, p. 494-507.<br>
+
Bacteriology.</span> 190(2). p. 494-507.<br>
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</span></small></p>
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Ti
Ti
plasmid. <span style="text-decoration: underline;">PNAS</span>.
plasmid. <span style="text-decoration: underline;">PNAS</span>.
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(99)19.12369-12374<br>
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99(19).12369-12374<br>
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</span></small></p>
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of <span style="font-style: italic;">Agrobacterium tumefaciens </span>Complements
of <span style="font-style: italic;">Agrobacterium tumefaciens </span>Complements
an
an
-
<span style="font-style: italic;">Escherichia coli</span><br>
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<span style="font-style: italic;">Escherichia coli</span> <span style="font-style: italic;"> phoB</span> Mutation and Is Required
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<span style="font-style: italic;">phoB</span> Mutation and Is Required
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for Virulence. <span style="text-decoration: underline;">Journal of Bacteriology.</span> 175(20). p.6626-6636.<br>
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for Virulence. <span style="text-decoration: underline;">J.
+
-
Microbiology.</span> Oct. 1993, p.6626-6636.<br>
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Virulence of
Virulence of
<span style="font-style: italic;">Agrobacterium tumefaciens. </span><span
<span style="font-style: italic;">Agrobacterium tumefaciens. </span><span
-
style="text-decoration: underline;">J. Bacteriology</span>. Oct. 1993,
+
style="text-decoration: underline;">Journal of Bacteriology</span>.175(20)
p. 6614-6625.<br>
p. 6614-6625.<br>
</span></small></p>
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the
the
Specificity of Two-Component Signal Transduction Systems. </span></small><span
Specificity of Two-Component Signal Transduction Systems. </span></small><span
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style="text-decoration: underline;">Cell</span>. (133). 6.
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style="text-decoration: underline;">Cell</span>. (133)6.
pp.1043-1054.<small><span
pp.1043-1054.<small><span
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p></span><br>
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p></span><br>
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application in
application in
whole-cell biocatalysis. (2009). <span
whole-cell biocatalysis. (2009). <span
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style="text-decoration: underline;">Appl. Microbiol. Biotechnol</span>.
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style="text-decoration: underline;">Appl. Microbiol. Biotechnol.</span>.
(2009). 83(4). p. 679-687.<o:p></o:p><br>
(2009). 83(4). p. 679-687.<o:p></o:p><br>
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Membrane Protein OmpA of <span style="font-style: italic;">Escherichia
Membrane Protein OmpA of <span style="font-style: italic;">Escherichia
coli. </span><span style="text-decoration: underline;">Journal of
coli. </span><span style="text-decoration: underline;">Journal of
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Biological Chemistry.</span> (268) 34, pp. 25664-25670.<br>
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Biological Chemistry.</span> 268(34). pp. 25664-25670.<br>
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</span></small></p>
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<p style="color: rgb(0, 0, 0); text-align: left;" class="MsoNormal"><small><span
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
style="font-weight: bold;">11.</span><b>The Celiac Site</b>. (2009).
style="font-weight: bold;">11.</span><b>The Celiac Site</b>. (2009).
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http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br>
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http://www.theceliacsite.com/<br>
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style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
style="font-weight: bold;">14.</span><b>National Digestive Diseases
style="font-weight: bold;">14.</span><b>National Digestive Diseases
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Information Clearinghouse (NDDIC)</b>. September
+
Information Clearinghouse (NDDIC)</b>.(September
-
2008. http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br>
+
2008). http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/<br>
</span></small></p>
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Latest revision as of 01:16, 15 December 2009

 

Contacts/References:


References:

1. Ze-Chun Yuan, Pu Liu, Panatda Saenkham, Kathleen Kerr, and Eugene W. Nester (2007). Transcriptome Profiling and Fuctional Analysis of Agrobacterium tumefaciens Reveals a General Conserved Response to Acidic Conditions (pH 5.5) and a Complex Acid-Mediated Signaling Involved in Agrobacterium-Plant Interactions. Journal of Bacteriology. 190(2). p. 494-507.

2.Luoping Li, Yonghui Jia, Qingming Hou, Trevor C. Charles, Eugene W. Nester, and Shen Q. Pan. (2002). A global pH sensor: Agrobacterium sensor protein ChvG regulates acid-inducible genes on its two chromosomes and Ti plasmid. PNAS. 99(19).12369-12374

3. Nicholas J. Mantis and Stephen C. Winans. (1993), The Chromosomal Response Regulatory Gene chvI of Agrobacterium tumefaciens Complements an Escherichia coli phoB Mutation and Is Required for Virulence. Journal of Bacteriology. 175(20). p.6626-6636.

4. Trevor C. Charles and Eugene W. Nester. (1993). A Chromosomally Encoded Two-Component Sensory Transduction System Is Required for Virulence of Agrobacterium tumefaciens. Journal of Bacteriology.175(20) p. 6614-6625.

5.Jeffrey M. Skerker, Barrett S. Perchuk, Albert Siryaporn, Emma A. Lubin, Orr Ashenberg, Mark Goulian and Michael T. Laub. (2008). Rewiring the Specificity of Two-Component Signal Transduction Systems. Cell. (133)6. pp.1043-1054.

6.
Takashi Aoyama, Mituru Takanami, Kozo Makino, and Atsuhiro Oka. (1991). Cross-talk between the virulence and phosphate regulons of Agrobacterium tumefaciens caused by an unusual interaction of the transcriptional activator with a regulatory DNA element.
. Mol. Gen. Genet. (1991). 227(3), pp.385-390.

7. Edwin van Bloois. Remko T. Winter. Dick B. Janssen, Marco W. Fraaije. 2009, Export of functional Streptomyces coelicolor alditol oxidase to the periplasm or cell surface of Escherichia coli and its application in whole-cell biocatalysis. (2009). Appl. Microbiol. Biotechnol.. (2009). 83(4). p. 679-687.

8.Dariusz Stepniak, Liesbeth Spaenij-Dekking, Cristina Mitea, Martine Moester, Arnoud de Ru, Renee Baak-Pablo, Peter van Veelen, Luppo Edens and Frits Koning. (2006). Highly efficient gluten degradation with a newly identified prolyl endoprotease: implications for celiac disease. Am J Physiol Gastrointest Liver Physiol. (2006).291(4): G621-G629.

9. Heung-Chae Junge, Joon-Hyun Park, Seung-Hwan Park, Jean-Michel Lebeault, and Jae-Gu Pan
. (1998). Expression of carboxymethylcellulase on the Surface of Escerichia coli using Pseudomonas syringae ice nucleation protein. Enzyme and Microbial Technology. (1998). 22(5): 348-354.

10. Michael Klose, Anja Störiko, York-Dieter Stierhof, Ingrid Hindennach, Bettina Mutschler, and Ulf Henning. (1993). Membrane Assembly of the Outer Membrane Protein OmpA of Escherichia coli. Journal of Biological Chemistry. 268(34). pp. 25664-25670.

11.The Celiac Site. (2009). http://www.theceliacsite.com/

12.Jonathan Gass, Michael T. Bethune, Matthew Siegel, Andrew Spencer, and Chaitan Khosla. (2007). Combination Enzyme Therapy for Gastric Digestion of Dietary Gluten in Patients With Celiac Sprue. Gastroenterology. 2007; 133: 472-480.

13.Roland Freud, Michael Klose, and Ulf Henning. (1989). Export and Sorting of the Escherichia coli Outer Membrane Protein OmpA. Journal of Bioenergetics and Biomembranes. 22 (3). pp.441-449.

14.National Digestive Diseases Information Clearinghouse (NDDIC).(September 2008). http://digestive.niddk.nih.gov/ddiseases/pubs/celiac/

15. Se Whan Park, Moon Gyu Chung, Hwa Young Lee, Jeong Yoon Kim, and Young Ha Rhee. (2008). Stable expression and secretion of the polyhydroxybutyrate depolymerase of Paucimonas lemoignei in Escherichia coli.  J. Microbiology. 46(6). pp. 662-669.  


Safety:

  1. Would any of your project ideas raise safety issues in terms of:
    • researcher safety,  NONE
    • public safety, or  NONE
    • environmental safety?  NONE
  2. Is there a local biosafety group, committee, or review board at your institution?  YES
  3. What does your local biosafety group think about your project? THEY FIND IT SAFE - REGULAR LAB STRAIN ECOLI AND GFP
  4. Do any of the new BioBrick parts that you made this year raise any safety issues?  NO
    • If yes, did you document these issues in the Registry? N/A