Team:USTC/Modeling/Model-11

From 2009.igem.org

Revision as of 03:10, 22 October 2009 by Zxhe (Talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

USTC
Home Team Project Modeling Parts Standard & Protocol Software Tool Human Practice Notebook

Team:USTC/Modeling/Model-11

Contents


pConX3+mRFP+cI+pcI+LuxI+tetR+pConX1+LuxI+pConX2+LuxR+pLux/Tet+ccdB

Parts:


Model-11-1.jpg

Model-11-2.jpg

Model-11-3.jpg


Simplified Model-11

To get the datails of the model-processing, click Simplified Model-2

We employed an ODE model. In this system,we assumed the synthesis rate of TetR, LuxR, cI and LuxI were totally decided by the Promoter before them, and the concentration of them were constant.

Sm-11-1.jpg


To simplify the model, the (Recation S11-4), (Recation S11-5), (Recation S11-10), (Recation S11-12), (Recation S11-14), (Recation S11-15), (Recation S11-16), (Recation S11-17) and (Recation S11-18) were considered to be able to get balance in a very short time.


Sm11-2.jpg


In above equations, all parameters could be obtained from our previous models. For instance, the kkk was estiamted in the Simplified Model-3, the kk was calculated in the Simplified Model-2, and the k21, rAHLin were available in Simplified Model-5. The PoPScI cloud be calculated in Simplified Model-6, dependenting on the PoPS before it.