Team:Uppsala-Sweden/Butanol

From 2009.igem.org

(Difference between revisions)
(The Constructs)
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Cyanobacteria have the capability to harvest the energy from the sun and convert it into other forms of energy. The natural way for these organisms is to store it as sugars or other carbohydrates in a way similar to plants. By introducing a casette of genes for isobutanol production, we would like to derive a cyanobacteria that produces butanol and its derivates.  
Cyanobacteria have the capability to harvest the energy from the sun and convert it into other forms of energy. The natural way for these organisms is to store it as sugars or other carbohydrates in a way similar to plants. By introducing a casette of genes for isobutanol production, we would like to derive a cyanobacteria that produces butanol and its derivates.  
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==The Pathway==
+
==The Constructs==
 +
We designed have to final constructs (<partinfo>BBa_K273011</partinfo> & <partinfo>BBa_K273012</partinfo> that actually only differ in the promoter, as our final host organism <i>Synechocystis sp PCC6803</i> does not allow the use of conventionel inducible promoters. More information about pPetE, a cupper inducible promoter for <i>Synechocystis sp PCC6803</i>, can be found here <partinfo>K273019</partinfo>.
-
The original pathway to obtain branched-chain higher alcohols was proposed and succesfully established in <i>E. coli</i> by Shota Atsumi, Taizo Hanai and James C. Liao from the University of Californa, Los Angeles. [https://2009.igem.org/Team:Uppsala-Sweden/Butanol#ref1 <nowiki>[1]</nowiki>] As we expect a broad range of higher alcohols, we will exemplarily demonstrate the biochemical mechanism at the pathway of isobutanol, the product we expect to be the most occuring one.
+
<h3><partinfo>BBa_K273011</partinfo> : The Construct for Testing Purposes in <i>E. Coli</i></h3>
-
<center>[[Image:butanolpath_horizontal.png]]</center>
 
-
The precursor for isobutanol production is pyruvate, a central metabolite which is usually derived by the glycolisis. Two pyruvate molecules are converted first to 2-acetolactate and then subsequently to 2,3-dihydroxy-isovalerate. A further dehydration reaction results in our first molecule of interest, 2-ketoisovalerate, which is a precursor for the synthesis of the aminoacids valine, alanine and leucine. [https://2009.igem.org/Team:Uppsala-Sweden/Butanol#ref2 <nowiki>[2]</nowiki>]
+
<center>[[Image:butanol_construct_ecoli.png]]</center>
-
So far, only host enzymes were used and now we introduce our first BioBrick <partinfo>K273006</partinfo> for the Butanol Approach, the codon-optimized version of the alpha-ketoisovalerate decarboxylase (kivd) from <i>Lactococcus lactis ssp. lactis</i>. [https://2009.igem.org/Team:Uppsala-Sweden/Butanol#ref3 <nowiki>[3]</nowiki>]
 
-
This particular enzyme performs a decarboylation reaction, thus transforms 2-ketoisovalerate to an aldehyde, isobutanal. [https://2009.igem.org/Team:Uppsala-Sweden/Butanol#ref4 <nowiki>[4]</nowiki>]
+
<h3><partinfo>BBa_K273012</partinfo> : The Final Construct for <i>Synechocystis sp PCC6803</i></h3>
-
Subsequently isobutanal is oxidized to isobutanol by enzyme which is encoded by our BioBrick <partinfo>K273005</partinfo>, the alcohol dehydrogenase 2 (adh2) from <i>S. cerevisiae</i>. [https://2009.igem.org/Team:Uppsala-Sweden/Butanol#ref5 <nowiki>[5]</nowiki>]
 
-
==The Constructs==
+
<center>[[Image:Butanol construct.png]]</center>
-
We designed have to final constructs (<partinfo>BBa_K273011</partinfo> & <partinfo>BBa_K273012</partinfo> that actually only differ in the promoter, as our final host organism <i>Synechocystis sp PCC6803</i> does not allow the use of conventionel inducible promoters. More information about pPetE, a cupper inducible promoter for <i>Synechocystis sp PCC6803</i>, can be found here <partinfo>K273019</partinfo>.
+
-
<h3><partinfo>BBa_K273011</partinfo> : The Construct for Testing Purposes in <i>E. Coli</i></h3>
 
 +
==The Pathway==
-
<center>[[Image:butanol_construct_ecoli.png]]</center>
+
The original pathway to obtain branched-chain higher alcohols was proposed and succesfully established in <i>E. coli</i> by Shota Atsumi, Taizo Hanai and James C. Liao from the University of Californa, Los Angeles. [https://2009.igem.org/Team:Uppsala-Sweden/Butanol#ref1 <nowiki>[1]</nowiki>] As we expect a broad range of higher alcohols, we will exemplarily demonstrate the biochemical mechanism at the pathway of isobutanol, the product we expect to be the most occuring one.
 +
<center>[[Image:butanolpath_horizontal.png]]</center>
-
<h3><partinfo>BBa_K273012</partinfo> : The Final Construct for <i>Synechocystis sp PCC6803</i></h3>
+
The precursor for isobutanol production is pyruvate, a central metabolite which is usually derived by the glycolisis. Two pyruvate molecules are converted first to 2-acetolactate and then subsequently to 2,3-dihydroxy-isovalerate. A further dehydration reaction results in our first molecule of interest, 2-ketoisovalerate, which is a precursor for the synthesis of the aminoacids valine, alanine and leucine. [https://2009.igem.org/Team:Uppsala-Sweden/Butanol#ref2 <nowiki>[2]</nowiki>]
 +
So far, only host enzymes were used and now we introduce our first BioBrick <partinfo>K273006</partinfo> for the Butanol Approach, the codon-optimized version of the alpha-ketoisovalerate decarboxylase (kivd) from <i>Lactococcus lactis ssp. lactis</i>. [https://2009.igem.org/Team:Uppsala-Sweden/Butanol#ref3 <nowiki>[3]</nowiki>]
-
<center>[[Image:Butanol construct.png]]</center>
+
This particular enzyme performs a decarboylation reaction, thus transforms 2-ketoisovalerate to an aldehyde, isobutanal. [https://2009.igem.org/Team:Uppsala-Sweden/Butanol#ref4 <nowiki>[4]</nowiki>]
 +
 
 +
Subsequently isobutanal is oxidized to isobutanol by enzyme which is encoded by our BioBrick <partinfo>K273005</partinfo>, the alcohol dehydrogenase 2 (adh2) from <i>S. cerevisiae</i>. [https://2009.igem.org/Team:Uppsala-Sweden/Butanol#ref5 <nowiki>[5]</nowiki>]
{{Uppsala-Sweden_Footer}}
{{Uppsala-Sweden_Footer}}

Revision as of 16:25, 19 October 2009




Contents

The Butanol Approach

Our goal is to achieve photosynthetic production of butanol and its derivates with the cyanobacterium Synechocystis sp. PCC 6803 as the final host organism.

Background

Cyanobacteria have the capability to harvest the energy from the sun and convert it into other forms of energy. The natural way for these organisms is to store it as sugars or other carbohydrates in a way similar to plants. By introducing a casette of genes for isobutanol production, we would like to derive a cyanobacteria that produces butanol and its derivates.

The Constructs

We designed have to final constructs ( & that actually only differ in the promoter, as our final host organism Synechocystis sp PCC6803 does not allow the use of conventionel inducible promoters. More information about pPetE, a cupper inducible promoter for Synechocystis sp PCC6803, can be found here .

 : The Construct for Testing Purposes in E. Coli


Butanol construct ecoli.png


 : The Final Construct for Synechocystis sp PCC6803


Butanol construct.png


The Pathway

The original pathway to obtain branched-chain higher alcohols was proposed and succesfully established in E. coli by Shota Atsumi, Taizo Hanai and James C. Liao from the University of Californa, Los Angeles. [1] As we expect a broad range of higher alcohols, we will exemplarily demonstrate the biochemical mechanism at the pathway of isobutanol, the product we expect to be the most occuring one.

Butanolpath horizontal.png

The precursor for isobutanol production is pyruvate, a central metabolite which is usually derived by the glycolisis. Two pyruvate molecules are converted first to 2-acetolactate and then subsequently to 2,3-dihydroxy-isovalerate. A further dehydration reaction results in our first molecule of interest, 2-ketoisovalerate, which is a precursor for the synthesis of the aminoacids valine, alanine and leucine. [2]

So far, only host enzymes were used and now we introduce our first BioBrick for the Butanol Approach, the codon-optimized version of the alpha-ketoisovalerate decarboxylase (kivd) from Lactococcus lactis ssp. lactis. [3]

This particular enzyme performs a decarboylation reaction, thus transforms 2-ketoisovalerate to an aldehyde, isobutanal. [4]

Subsequently isobutanal is oxidized to isobutanol by enzyme which is encoded by our BioBrick , the alcohol dehydrogenase 2 (adh2) from S. cerevisiae. [5]





Bioneer Biolegio Clontech Uppsala Genome Center