Team:Washington/Accomplishments

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University of Washington 2009 iGEM Team Accomplishments

Demonstrated that at least one new BioBrick Part of our own design works as expected

  • BBa_K215000 Target Expression Vector - expresses a favorite protein fused to streptavidin-binding Nano-Tag, secretion tag that directs export of the protein, and a His tag - all tags are removable by incubation with TEV protease. Find this in our wiki
  • BBa_K215091 Expresses OpdA, a nerve agent-degrading enzyme. Find this in our wiki
  • BBa_K215000 Protein Expression Vector - when IPTG-induced, expresses a protein with strong promoter and RBS (a good combination of BioBricks not previously found in the Registry). Find this in our wiki

Characterized existing BioBrick Parts and documented this information on the Registry

  • Find these in our wiki
  • BBa_J36848 2006 Harvard iGEM Streptavidin Cell Surface Display Construct - monomeric streptavidin, one OmpA transmembrane helix
  • BBa_J36849 2006 Harvard iGEM Streptavidin Cell Surface Display Construct - single chain dimeric streptavidin, one OmpA transmembrane helix
  • BBa_J36850 2006 Harvard iGEM Streptavidin Cell Surface Display Construct - monomeric streptavidin, five OmpA transmembrane helices
  • BBa_J36851 2006 Harvard iGEM Streptavidin Cell Surface Display Construct - single chain dimeric streptavidin, five OmpA transmembrane helices

Synthesized and BioBricked type I secretion system from Erwinia chrysanthemi

  • Find these in our wiki
  • BBa_K215107, Type I secretion system from Erwinia Chrysanthemi, constitutive expression, low copy, STRONG PROMOTER
  • BBa_K215108, Type I secretion system from Erwinia Chrysanthemi, constitutive expression, low copy, MEDIUM PROMOTER
  • BBa_K215109, Type I secretion system from Erwinia Chrysanthemi: constitutive expression, low copy, WEAK PROMOTER

Developed assay to quantify secreted protein

  • This assay assess for the presence of secreted His-tagged protein in the growth media by running media over a nickel column (His-tagged proteins will be retained), wash column, and elute protein. Eluted protein is quantified by comparing to a calculated standard curve. Find this in our wiki

Designed new modular surface display system

  • This BioBrick is designed to express any protein as a cell surface display protein, using the well-characterized Lpp-OmpA cell surface display system. Generated BioBrick, functionality not confirmed. Find this in our wiki

Worked on computational design of novel biotin-binding protein using Rosetta and Fold-It

Gained real-world synthetic biology experience

  • We learned about the power of synthetic biology to address real-world problems, gained experience in designing and constructing our own molecular biology projects, and discovered that proficiency in troubleshooting is a must with synthetic biology. Find us in our wiki

BioBricks

Target Vector

Target structure.png

BBa_K215002 Is a BioBrick part that was designed to work in conjunction with the Secretion System (BBa_K215107). Expression of protein from this vector creates a fusion protein that contains the prtB secretion signal recognized by the secretion system. The fusion protein also contains: a Nano-Tag to the protein that is able to bind Streptavidin, Histidine Epitope Tags for easy protein purification, and TEV protease sites for removing all tags from the expressed protein.

  • Current Status: Complete

Secretion System

Secretion structure.png

BBa_K215107 Is the BioBrick version of the Type 1 secretion system from Erwinia Chrysanthemi. It directs the secretion of proteins that contain the prtB C-terminus Epitote tag. To create a fusion protein with the prtB tag see BBa_K215002.

  • Current Status: In progress

Display System

Display structure.png

BBa_K215200 is a Display vector that will allow for the presentation of any protein on the cell surface by fusing the protein to the transmembrane region of Outer Membrane Protein A (OmpA). The fusion protein contains a GS peptide linker to space the displayed protein away from the outer membrane and also contains a TEV protease site to allow for purification of the displayed protein.

  • This Part is composed of:
    • BBa_K215201: Display Vector with 5 trans-membrane OMPA
    • BBa_K215250: Coding Sequence for fusion protein scaffold, 1 trans-membrane OMPA
    • BBa_K215251: Coding Sequence for fusion protein scaffold, 5 trans-membrane OMPA


  • Current Status: In progress