Team:Washington/Bibliography

From 2009.igem.org

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====General overview====
====General overview====
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#Protein production and purification, Structural Genomics Consortium et.al. Nature Methods Vol.5 NO.2, February 2008
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#Protein production and purification, Structural Genomics Consortium et.al. [http://www.ncbi.nlm.nih.gov/pubmed/18235434 Nature Methods Vol.5 NO.2, February 2008]
#TAG: Lamla and Erdmann. [http://www.ncbi.nlm.nih.gov/pubmed/14680960 The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins.]
#TAG: Lamla and Erdmann. [http://www.ncbi.nlm.nih.gov/pubmed/14680960 The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins.]
#Palacios et al. [http://www.ncbi.nlm.nih.gov/pubmed/11157948 Subset of Hybrid Eukaryotic Proteins Is Exported by the Type I Secretion System of Erwinia chrysanthemi, Secretion of GFP in E. Coli]
#Palacios et al. [http://www.ncbi.nlm.nih.gov/pubmed/11157948 Subset of Hybrid Eukaryotic Proteins Is Exported by the Type I Secretion System of Erwinia chrysanthemi, Secretion of GFP in E. Coli]
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#Cell Surface Streptavidin, P. Tsai. IET Synth. Biol., Vol. 1, No. 1–2, 2007
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#Cell surface streptavidin. Tsai P. [http://dx.doi.org/10.1049/iet-stb:20070002 IET Synth Biol. 2007;1(1.2):32]
====Target====
====Target====
#Lamla and Erdmann. [http://www.ncbi.nlm.nih.gov/pubmed/14680960 The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins.]
#Lamla and Erdmann. [http://www.ncbi.nlm.nih.gov/pubmed/14680960 The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins.]
#Palacios et al. [http://www.ncbi.nlm.nih.gov/pubmed/11157948 Subset of Hybrid Eukaryotic Proteins Is Exported by the Type I Secretion System of Erwinia chrysanthemi, Secrevtion of GFP in E. Coli].
#Palacios et al. [http://www.ncbi.nlm.nih.gov/pubmed/11157948 Subset of Hybrid Eukaryotic Proteins Is Exported by the Type I Secretion System of Erwinia chrysanthemi, Secrevtion of GFP in E. Coli].
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#David Waugh. [http://mcl1.ncifcrf.gov/waugh_tech/faq/tev.pdf TEV Protease].
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#[http://www.cardiff.ac.uk/biosi/staffinfo/ehrmann/tools/TEVprot.html Tobacco Etch Virus (TEV) Protease general information]
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#Irene Horne, et al. Identification of an opd (Organophosphate Degradation) Gene in an Agrobacterium Isolate.
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#[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC126808/ Irene Horne, et al. Identification of an opd (Organophosphate Degradation) Gene in an Agrobacterium Isolate.]
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#H.Yang, et al. Evolution of an organophosphate-degrading enzyme:a comparison of natural and directed evolution.
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#[http://peds.oxfordjournals.org/cgi/content/abstract/16/2/135 H.Yang, et al. Evolution of an organophosphate-degrading enzyme:a comparison of natural and directed evolution.]
====Secretion====
====Secretion====
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#Expression of the endogenous type II secretion pathway in Escherichia coli leads to chitinase secretion. Olivera
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#Francetic et al. Expression of the endogenous type II secretion pathway in Escherichia coli leads to chitinase secretion [http://www.ncbi.nlm.nih.gov/pubmed/11118204 EMBO J. 2000 Dec 15;19(24):6697-703]
#Palacios et al. [http://www.ncbi.nlm.nih.gov/pubmed/11157948 Subset of Hybrid Eukaryotic Proteins Is Exported by the Type I Secretion System of Erwinia chrysanthemi, Secrevtion of GFP in E. Coli]
#Palacios et al. [http://www.ncbi.nlm.nih.gov/pubmed/11157948 Subset of Hybrid Eukaryotic Proteins Is Exported by the Type I Secretion System of Erwinia chrysanthemi, Secrevtion of GFP in E. Coli]
#Chung et al. [http://www.ncbi.nlm.nih.gov/pubmed/19178697 Export of recombinant proteins in Escherichia coli using ABC transporter, Secretion of GFP in E. Coli]
#Chung et al. [http://www.ncbi.nlm.nih.gov/pubmed/19178697 Export of recombinant proteins in Escherichia coli using ABC transporter, Secretion of GFP in E. Coli]
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#Holland et. al. [http://www.ncbi.nlm.nih.gov/pubmed/16092522 Type 1 protein secretion in bacteria, the ABC-transporter dependent pathway]
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#Holland et al. [http://www.ncbi.nlm.nih.gov/pubmed/16092522 Type 1 protein secretion in bacteria, the ABC-transporter dependent pathway]
 +
#[http://www.ncbi.nlm.nih.gov/pubmed/15763404 Mergulhaoa and Summersb and Monteiroa. Recombinant protein secretion in Escherichia coli]
====Display====
====Display====
-
+
#The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins [http://www.ncbi.nlm.nih.gov/pubmed/14680960 doi:10.1016/j.physletb.2003.10.071]
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#The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins doi:10.1016/j.physletb.2003.10.071
+
#Structural origins of high-affinity biotin binding to streptavidin. PC Weber, DH Ohlendorf, JJ Wendoloski, and FR Salemme (6 January 1989). Science 243 (4887), 85. [http://www.ncbi.nlm.nih.gov/pubmed/2911722 DOI: 10.1126/science.2911722]
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#Structural origins of high-affinity biotin binding to streptavidin. PC Weber, DH Ohlendorf, JJ Wendoloski, and FR Salemme (6 January 1989). Science 243 (4887), 85. [DOI: 10.1126/science.2911722]
+
#Display of green fluorescent protein on ''Escherichia coli'' cell surface. Shi H, Wen Su W. Department of Biological & Agricultural Engineering, University of Missouri-Columbia, 65211, Columbia, MO, USA [http://www.ncbi.nlm.nih.gov/pubmed/11118595 Enzyme Microb Technol. 2001 Jan 2;28(1):25-34]
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#Display of green fluorescent protein on ''Escherichia coli'' cell surface. Shi H, Wen Su W. Department of Biological & Agricultural Engineering, University of Missouri-Columbia, 65211, Columbia, MO, USAEnzyme Microb Technol. 2001 Jan 2;28(1):25-34.
+
#Cell surface display of organophosphorus hydrolase using ice nucleation protein. Shimazu M, Mulchandani A, Chen W.Department of Chemical and Environmental Engineering, and Environmental Toxicology Program, University of California, Riverside, CA 92521, USA. [http://www.ncbi.nlm.nih.gov/pubmed/11170483 Biotechnol Prog. 2001 Jan-Feb;17(1):76-80]
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#Cell surface display of organophosphorus hydrolase using ice nucleation protein. Shimazu M, Mulchandani A, Chen W. Biotechnol Prog. 2001 Jan-Feb;17(1):76-80. Department of Chemical and Environmental Engineering, and Environmental Toxicology Program, University of California, Riverside, CA 92521, USA.
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#Anchorage of cyclodextrin glucanotransferase on the outer membrane of ''Escherichia coli''. Wan HM, Chang BY, Lin SC. Department of Chemical Engineering, National Chung Hsing University, Taichung, 402, Taiwan. [http://www.ncbi.nlm.nih.gov/pubmed/12115409 Biotechnol Bioeng. 2002 Aug 20;79(4):457-64]
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#Anchorage of cyclodextrin glucanotransferase on the outer membrane of ''Escherichia coli''. Wan HM, Chang BY, Lin SC. Biotechnol Bioeng. 2002 Aug 20;79(4):457-64. Department of Chemical Engineering, National Chung Hsing University, Taichung, 402, Taiwan.
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#Cell surface display of functional macromolecule fusions on ''Escherichia coli'' for development of an autofluorescent whole-cell biocatalyst. Yang C, Zhao Q, Liu Z, Li Q, Qiao C, Mulchandani A, Chen W. State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China. [http://www.ncbi.nlm.nih.gov/pubmed/18767673 Environ Sci Technol. 2008 Aug 15;42(16):6105-10]
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#Cell surface display of functional macromolecule fusions on ''Escherichia coli'' for development of an autofluorescent whole-cell biocatalyst. Yang C, Zhao Q, Liu Z, Li Q, Qiao C, Mulchandani A, Chen W. Environ Sci Technol. 2008 Aug 15;42(16):6105-10. State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.
+
#Cell surface streptavidin. Tsai P. [http://dx.doi.org/10.1049/iet-stb:20070002 IET Synth Biol. 2007;1(1.2):32]
-
#Cell surface streptavidin. Tsai P. IET Synthetic Biol. 2007;1(1.2):32.
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#Isolating and engineering human antibodies using yeast surface display. Chao G et al. [http://www.ncbi.nlm.nih.gov/pubmed/17406305 Nat Protoc. 2006;1(2):755-68]
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#HisDetector Nickel-HRP, http://www.kpl.com/catalog/productdetail.cfm?catalog_ID=17&Category_ID=448&Product_ID=1085
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#ImageJ. http://rsbweb.nih.gov/ij/docs/index.html
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====Future Directions====
====Future Directions====

Latest revision as of 07:08, 20 October 2009

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References

General overview

  1. Protein production and purification, Structural Genomics Consortium et.al. Nature Methods Vol.5 NO.2, February 2008
  2. TAG: Lamla and Erdmann. The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins.
  3. Palacios et al. Subset of Hybrid Eukaryotic Proteins Is Exported by the Type I Secretion System of Erwinia chrysanthemi, Secretion of GFP in E. Coli
  4. Cell surface streptavidin. Tsai P. IET Synth Biol. 2007;1(1.2):32

Target

  1. Lamla and Erdmann. The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins.
  2. Palacios et al. Subset of Hybrid Eukaryotic Proteins Is Exported by the Type I Secretion System of Erwinia chrysanthemi, Secrevtion of GFP in E. Coli.
  3. Tobacco Etch Virus (TEV) Protease general information
  4. Irene Horne, et al. Identification of an opd (Organophosphate Degradation) Gene in an Agrobacterium Isolate.
  5. H.Yang, et al. Evolution of an organophosphate-degrading enzyme:a comparison of natural and directed evolution.

Secretion

  1. Francetic et al. Expression of the endogenous type II secretion pathway in Escherichia coli leads to chitinase secretion EMBO J. 2000 Dec 15;19(24):6697-703
  2. Palacios et al. Subset of Hybrid Eukaryotic Proteins Is Exported by the Type I Secretion System of Erwinia chrysanthemi, Secrevtion of GFP in E. Coli
  3. Chung et al. Export of recombinant proteins in Escherichia coli using ABC transporter, Secretion of GFP in E. Coli
  4. Holland et al. Type 1 protein secretion in bacteria, the ABC-transporter dependent pathway
  5. Mergulhaoa and Summersb and Monteiroa. Recombinant protein secretion in Escherichia coli

Display

  1. The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins doi:10.1016/j.physletb.2003.10.071
  2. Structural origins of high-affinity biotin binding to streptavidin. PC Weber, DH Ohlendorf, JJ Wendoloski, and FR Salemme (6 January 1989). Science 243 (4887), 85. DOI: 10.1126/science.2911722
  3. Display of green fluorescent protein on Escherichia coli cell surface. Shi H, Wen Su W. Department of Biological & Agricultural Engineering, University of Missouri-Columbia, 65211, Columbia, MO, USA Enzyme Microb Technol. 2001 Jan 2;28(1):25-34
  4. Cell surface display of organophosphorus hydrolase using ice nucleation protein. Shimazu M, Mulchandani A, Chen W.Department of Chemical and Environmental Engineering, and Environmental Toxicology Program, University of California, Riverside, CA 92521, USA. Biotechnol Prog. 2001 Jan-Feb;17(1):76-80
  5. Anchorage of cyclodextrin glucanotransferase on the outer membrane of Escherichia coli. Wan HM, Chang BY, Lin SC. Department of Chemical Engineering, National Chung Hsing University, Taichung, 402, Taiwan. Biotechnol Bioeng. 2002 Aug 20;79(4):457-64
  6. Cell surface display of functional macromolecule fusions on Escherichia coli for development of an autofluorescent whole-cell biocatalyst. Yang C, Zhao Q, Liu Z, Li Q, Qiao C, Mulchandani A, Chen W. State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China. Environ Sci Technol. 2008 Aug 15;42(16):6105-10
  7. Cell surface streptavidin. Tsai P. IET Synth Biol. 2007;1(1.2):32
  8. Isolating and engineering human antibodies using yeast surface display. Chao G et al. Nat Protoc. 2006;1(2):755-68

Future Directions

  1. Haugland RP, "Coupling of antibodies with biotin".