Team:BCCS-Bristol/Modeling/Mattia

From 2009.igem.org

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Mattia Fazzini
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*Last Year Bug Fixing:
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**<s>New solution for reading gammaVals.txt (Old Problem: In Windows Vista semeed to be some reading problems)</s>
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**<s>Mathematic corrections in calcDistFromBoundary(Wrong Mathematics)</s>
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*BSim 3D:
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<html>
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**Update Class BSimParticle r28 r51
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<!--
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***<s>Class parameters</s>
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<object width="560" height="340"><param name="movie" value="http://www.youtube.com/v/vqN0Gw3p36g&hl=it&fs=1&"></param><param name="allowFullScreen" value="true"></param><param name="allowscriptaccess" value="always"></param><embed src="http://www.youtube.com/v/vqN0Gw3p36g&hl=it&fs=1&" type="application/x-shockwave-flash" allowscriptaccess="always" allowfullscreen="true" width="560" height="340"></embed></object>
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***<s>Constructor</s>
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-->
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***<s>setPosition</s>
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</html>
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***<s>setCentrePos</s>
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***<s>setDirection</s>
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***<s>normalise3DVector</s>
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**Update Class BSimChemicalField r29 r35
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***<s>Class parameters</s>
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***<s>Constructor</s>
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***<s>setAsLinear</s>
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***<s>redraw</s>
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***<s>updateField</s>
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***Update Class BSimChemicalFieldThread
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****<s>Class parameters</s>
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****<s>Constructor</s>
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****<s>run</s>
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***<s>addChemical</s>
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***<s>getConcentration</s>
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***<s>getField</s>
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**Update Class BSImBacterium r30 r50 r55
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***<s>iterateBacterium</s>
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***iterateTumble
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***<s>startNewPhase</s>
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***<s>doRun</s>
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**Update Class BSImBacteriaCreate r31 r48
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***<s>createBacteriaSet</s>
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***<s>createBacterium</s>
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**Update Class BSimDeadBacterium r32
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***<s>runLogic</s>
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**Update Class BSimBeadsCreate r33
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***<s>createBeadSet</s>
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***<s>createBead</s>
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**Update Class BSimChemicalFieldCreate r36
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***<s>createChemicalField</s>
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**Update Class BSimCollisionPhysics r37 r39 r46
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***<s>Class parameters</s>
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***<s>updateProperties</s>
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***Update Class BSimCollisionPhysicsThread
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****<s>run</s>
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****<s>distBetweenPoints</s>
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****<s>resolveExternalForces</s>
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****<s>linearMotion</s>
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****<s>force2Velocity3D</s>
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**Update Class BSimParameters r38 r41 r42 r58
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***<s>Class parameters</s>
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***<s>createNewSolid[https://2009.igem.org/Team:BCCS-Bristol/Modeling/Mattia/box Box]BoundariesVec</s>
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***<s>createNewWrap[https://2009.igem.org/Team:BCCS-Bristol/Modeling/Mattia/box Box]BoundariesVec</s>
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**Update Class BSimScene r40 r56
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***<s>resetScene</s>
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***<s>runAllUpdates</s>
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**<s>New Class BSimPlaneBoundaryCreate</s> r43 r 54
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**<s>New Class BSimSolidPlaneBoundary</s> r44 r49 r53
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**Update Class BSim[https://2009.igem.org/Team:BCCS-Bristol/Modeling/Mattia/parameter Parameters]Loader r47 r57
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***<s>processLine</s>
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**<s>New Class BSimWrapPlaneBoundary</s> r52
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*BSim Population Dynamics:

Revision as of 10:30, 25 August 2009

  • Last Year Bug Fixing:
    • New solution for reading gammaVals.txt (Old Problem: In Windows Vista semeed to be some reading problems)
    • Mathematic corrections in calcDistFromBoundary(Wrong Mathematics)
  • BSim 3D:
    • Update Class BSimParticle r28 r51
      • Class parameters
      • Constructor
      • setPosition
      • setCentrePos
      • setDirection
      • normalise3DVector
    • Update Class BSimChemicalField r29 r35
      • Class parameters
      • Constructor
      • setAsLinear
      • redraw
      • updateField
      • Update Class BSimChemicalFieldThread
        • Class parameters
        • Constructor
        • run
      • addChemical
      • getConcentration
      • getField
    • Update Class BSImBacterium r30 r50 r55
      • iterateBacterium
      • iterateTumble
      • startNewPhase
      • doRun
    • Update Class BSImBacteriaCreate r31 r48
      • createBacteriaSet
      • createBacterium
    • Update Class BSimDeadBacterium r32
      • runLogic
    • Update Class BSimBeadsCreate r33
      • createBeadSet
      • createBead
    • Update Class BSimChemicalFieldCreate r36
      • createChemicalField
    • Update Class BSimCollisionPhysics r37 r39 r46
      • Class parameters
      • updateProperties
      • Update Class BSimCollisionPhysicsThread
        • run
        • distBetweenPoints
        • resolveExternalForces
        • linearMotion
        • force2Velocity3D
    • Update Class BSimParameters r38 r41 r42 r58
      • Class parameters
      • createNewSolidBoxBoundariesVec
      • createNewWrapBoxBoundariesVec
    • Update Class BSimScene r40 r56
      • resetScene
      • runAllUpdates
    • New Class BSimPlaneBoundaryCreate r43 r 54
    • New Class BSimSolidPlaneBoundary r44 r49 r53
    • Update Class BSimParametersLoader r47 r57
      • processLine
    • New Class BSimWrapPlaneBoundary r52
  • BSim Population Dynamics:
Retrieved from "http://2009.igem.org/Team:BCCS-Bristol/Modeling/Mattia"