Team:Groningen/Brainstorm/Modelling

From 2009.igem.org

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==Systems from previous years==
==Systems from previous years==
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*RNA folding (secondary structure)
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**[https://2008.igem.org/Team:Alberta_NINT/Modeling Alberta 2008], using [http://rna.urmc.rochester.edu/rnastructure.html RNAstructure] and UNAFold (with a front-end), they used both programs (presumably to get an idea of the certainty)
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*Molecular Circuit (?)
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**[https://2008.igem.org/Team:Bologna/Modeling Bologna 2008], using Simulink (Mathworks)
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**[https://2008.igem.org/Team:ETH_Zurich/Modeling/Switch_Circuit ETH Zurich 2008], using the Symbiology toolbox in Matlab
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*Cell processes
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**[https://2008.igem.org/Modeling Calgary 2008], using their own tool (transcription and translation)
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*Static genome analysis (?)
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**[https://2008.igem.org/Team:ETH_Zurich/Modeling/Genome_Static_Analysis ETH Zurich 2008], using their own tool
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*Genome Scale Model (cell physiology)
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**[https://2008.igem.org/Team:ETH_Zurich/Modeling/Genome-Scale_Model ETH Zurich 2008]
==Literature==
==Literature==
See our [[Team:Groningen/Literature/Modelling|literature list]]. For our team members that are looking for books on the subject, have a look under code 605B (Bernoulliborg library, lower floor).
See our [[Team:Groningen/Literature/Modelling|literature list]]. For our team members that are looking for books on the subject, have a look under code 605B (Bernoulliborg library, lower floor).

Revision as of 09:32, 22 April 2009

Systems from previous years

  • RNA folding (secondary structure)
    • Alberta 2008, using [http://rna.urmc.rochester.edu/rnastructure.html RNAstructure] and UNAFold (with a front-end), they used both programs (presumably to get an idea of the certainty)
  • Molecular Circuit (?)
  • Cell processes
    • Calgary 2008, using their own tool (transcription and translation)
  • Static genome analysis (?)
  • Genome Scale Model (cell physiology)

Literature

See our literature list. For our team members that are looking for books on the subject, have a look under code 605B (Bernoulliborg library, lower floor).