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Team:Groningen/Modelling/Characterization
From 2009.igem.org
(Difference between revisions)
m (Fix for AsT on x-axis) |
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| Line 202: | Line 202: | ||
cost += Math.sqrt(curcost/n); // Compute the square root of the average of the squares (RMS) | cost += Math.sqrt(curcost/n); // Compute the square root of the average of the squares (RMS) | ||
weight++; | weight++; | ||
| + | |||
| + | // Set last solution | ||
| + | e[i].solution = {'cost':curcost, 'xt':xt}; | ||
} else if (e[i].time==Infinity) { // Vary AsT, with equilibrium | } else if (e[i].time==Infinity) { // Vary AsT, with equilibrium | ||
var avgv = {}; | var avgv = {}; | ||
| Line 224: | Line 227: | ||
weight++; | weight++; | ||
} | } | ||
| - | |||
| - | |||
| - | |||
} | } | ||
return cost/weight; // Take the average of the RMS values for all graphs, making it "easier" to disregard certain experiments in favour of the rest. | return cost/weight; // Take the average of the RMS values for all graphs, making it "easier" to disregard certain experiments in favour of the rest. | ||
| Line 329: | Line 329: | ||
document.getElementById('Meng2004Graph').refresh(); | document.getElementById('Meng2004Graph').refresh(); | ||
document.getElementById('Singh2008Graph').refresh(); | document.getElementById('Singh2008Graph').refresh(); | ||
| + | document.getElementById('Kostal2004fig3AGraph').refresh(); | ||
} | } | ||
| Line 440: | Line 441: | ||
|{{graph|Team:Groningen/Graphs/Characterization/GlpF|id=Meng2004Graph}} | |{{graph|Team:Groningen/Graphs/Characterization/GlpF|id=Meng2004Graph}} | ||
|{{graph|Team:Groningen/Graphs/Characterization/Singh2008|id=Singh2008Graph}} | |{{graph|Team:Groningen/Graphs/Characterization/Singh2008|id=Singh2008Graph}} | ||
| + | |- | ||
| + | |{{graph|Team:Groningen/Graphs/Characterization/Kostal2004fig3A|id=Kostal2004fig3AGraph}} | ||
|} | |} | ||
| + | <!-- Don't forget to update the refreshGraphs function above! --> | ||
Revision as of 12:32, 6 October 2009
[http://2009.igem.org/Team:Groningen http://2009.igem.org/wiki/images/f/f1/Igemhomelogo.png]
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- Modelling
- DetailedModel
- Characterization
- Downloads
TODO: Talk about the devices we have and in what way we want to characterize them.
Uptake measurements
| Time (min) | ||||||
|---|---|---|---|---|---|---|
| 0 | 10 | 20 | 40 | 60 | ||
| As(III)exT(0) (µM) | 0 | x | ||||
| 10 | x | x | x | x | x | |
| 20 | x | |||||
| 50 | x | |||||
| 100 | x | |||||
To efficiently look at both time and concentration dependent processes we took samples as in the table on the right. Below we list all results, which have been used for fitting all necessary parameters.
TODO: List results. Take conversion from nmol/mg and mg/ml to µM and Vc/Vs into account.
| best | cur | gradient | solved | |
|---|---|---|---|---|
| v5/K5 | ||||
| v5 | ||||
| K5 | ||||
| k8/K7 | ||||
| k8 | ||||
| K7 | ||||
| tauBbeta4 | ||||
| tauB | ||||
| beta4 | ||||
| tauR | ||||
| beta1 | ||||
| E |
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Retrieved from "http://2009.igem.org/Team:Groningen/Modelling/Characterization"
