Team:Groningen/Literature

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Literature

Currently many references are connected to the paragraph its information has been used.


Our metal related literature by subject:

Cu Zn As Cd Sb Hg
Importers GlpF Meng2004, Rosen2009 Meng2004
[http://partsregistry.org/Part:BBa_K190018 HmtA]
Exporters ArsB Tisa1989, Carlin1995, Rosen1996, Meng2004, Summers2009 Tisa1989, Carlin1995, Rosen1996, Meng2004, Summers2009
Accumulators ArsR Carlin1995, Rosen1996, Chen1997, Kostal2004, Summers2009 Carlin1995, Rosen1996, Summers2009
ArsD Chen1997, Lin2007-1/2, Summers2009 Chen1997, Lin2007-1/2, Summers2009
SmtA Shi1992 Shi1992, Turner1995, Robinson2001, Blindauer2002 Shi1992 Shi1992
MymT
MT Ngu2006
Promoters



Alon2007
Ensarija Star (soft edges).png Uri Alon (2007). Introduction to systems biology: design principles of biological circuits Chapman & Hall/CRC. ISBN 978-1-58488-642-6
Baldwin1995
W.W. Baldwin, Richard Myer, Nicole Powell, et al (August 1995). "[http://www.springerlink.com/content/nu1lkduf3w89fmd8 Buoyant density of Escherichia coli is determined solely by the osmolarity of the culture medium]". Archives of Microbiology 164(2): 155-157
Beyer2004
Andreas Beyer, Jens Hollunder, Heinz-Peter Nasheuer and Thomas Wilhelm (August 2004). "[http://dx.doi.org/10.1074/mcp.M400099-MCP200 Post-transcriptional Expression Regulation in the Yeast Saccharomyces cerevisiae on a Genomic Scale]". Molecular & Cellular Proteomics 3: 1083-1092
Blindauer2002
Claudia A. Blindauer, Mark D. Harrison, Andrea K. Robinson, et al (2002). "[http://dx.doi.org/10.1046/j.1365-2958.2002.03109.x Multiple bacteria encode metallothioneins and SmtA-like zinc fingers]". Molecular Microbiology 45(5): 1421-1432
Bylund1991
J.E. Bylund, M.A. Haines, K. Walsh, et al (September 1991). "[http://jb.asm.org/cgi/content/abstract/173/17/5396 Buoyant density studies of several mecillinam-resistant and division mutants of Escherichia coli]". Journal of Bacteriology 173(17): 5396-5402
Carlin1995
Arthur Carlin, Weiping Shi, Saibal Dey and Barry P. Rosen (February 1995). "[http://www.ncbi.nlm.nih.gov/pubmed/7860609 The ars Operon of Escherichia coli Confers Arsenical and Antimonial Resistance]". Journal of Bacteriology 177(4): 981-986
Chen1997
Ensarija Star (soft edges).png Yanxiang Chen and Barry P. Rosen (May 1997). "[http://www.ncbi.nlm.nih.gov/pubmed/9162059 Metalloregulatory Properties of the ArsD Repressor]". The Journal of Biological Chemistry 272(22): 14257-14262
Gilchrist2007
Michael A. Gilchrist (2007). "[http://dx.doi.org/10.1093/molbev/msm169 Combining Models of Protein Translation and Population Genetics to Predict Protein Production Rates from Codon Usage Patterns]". Molecular Biology and Evolution 24(11): 2362-2372
Goudar1999
Chetan T. Goudara, Jagadeesh R. Sonnadb and Ronald G. Duggleby (January 1999). "[http://dx.doi.org/10.1016/S0167-4838(98)00247-7 Parameter estimation using a direct solution of the integrated Michaelis-Menten equation]". Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology 1429(2): 377-383
Hoefnagel2002
M.H.N. Hoefnagel, A. van der Burgt, D.E. Martens, et al (March 2002). "[http://dx.doi.org/10.1023/A:1020313409954 Time Dependent Responses of Glycolytic Intermediates in a Detailed Glycolytic Model of Lactococcus Lactis During Glucose Run-Out Experiments]". Molecular Biology Reports 29: 157-161
Holland2009
Daryl P. Holland, Anthony E. Walsby (February 2009). "[http://dx.doi.org/10.1016/j.mimet.2009.02.005 Digital recordings of gas-vesicle collapse used to measure turgor pressure and cell–water relations of cyanobacterial cells ]". Journal of Microbiological Methods 77: 214-224
Kelly2009
Jason R. Kelly, Adam J. Rubin, Joseph H. Davis, et al (March 2009). "[http://dx.doi.org/10.1186/1754-1611-3-4 Measuring the activity of BioBrick promoters using an in vivo reference standard]". Journal of Biological Engineering 3: 4
Kostal2004
Ensarija Star (soft edges).png Jan Kostal, Rosanna Yang, Cindy H. Wu, et al (August 2004). "[http://dx.doi.org/10.1128/AEM.70.8.4582-4587.2004 Enhanced Arsenic Accumulation in Engineered Bacterial Cells Expressing ArsR]". Applied and Environmental Microbiology 70(8): 4582–4587
Li1998
Ensarija Star (soft edges).png Ning Li and Maura C. Cannon (May 1998). "Gas Vesicle Genes Identified in Bacillus megaterium and Functional Expression in Escherichia coli". Journal of Bacteriology 180(9): 2450–2458
Lin2007-1
Yung-Feng Lin, Jianbo Yang and Barry P. Rosen (April 2007). "[http://dx.doi.org/10.1074/jbc.M700886200 ArsD Residues Cys12, Cys13, and Cys18 Form an As(III)-binding Site Required for Arsenic Metallochaperone Activity]". The Journal of Biological Chemistry 282(23): 16783–16791
Lin2007-2
Yung-Feng Lin, Jianbo Yang and Barry P. Rosen (December 2007). "[http://dx.doi.org/10.1007/s10863-007-9113-y ArsD: an As(III) metallochaperone for the ArsAB As(III)-translocating ATPase]". Journal of Bioenergetics and Biomembranes 39: 453-458
Meng2004
Ensarija Star (soft edges).png Yu-Ling Meng, Zijuan Liu and Barry P. Rosen (February 2004). "[http://dx.doi.org/10.1074/jbc.M400037200 As(III) and Sb(III) Uptake by GlpF and Efflux by ArsB in Escherichia coli]". Journal of Biological Chemistry 279: 18334-18341
Neves1999
Ana Rute Neves, Ana Ramos, Marta C. Nunes, et al (1999). "[http://dx.doi.org/10.1002/(SICI)1097-0290(19990720)64%3A2%3C200%3A%3AAID-BIT9%3E3.0.CO%3B2-K In vivo nuclear magnetic resonance studies of glycolytic kinetics in Lactococcus lactis]". Biotechnology and Bioengineering 64: 200-212
Ngu2006
Thanh T. Ngu, M. Stillman (April 2006). "[http://dx.doi.org/10.1021/ja062914c Arsenic Binding to Human Metallothionein]". J. Am. Chem. Soc 128 (38): 12473–12483
Poole1977
R.K. Poole (1977). "[http://mic.sgmjournals.org/cgi/content/abstract/98/1/177 Fluctuations in Buoyant Density during the Cell Cycle of Escherichia coli K12]". Journal of General Microbiology 98: 177-186
Robinson2001
Nigel J. Robinson, Simon K. Whitehall and Jennifer S. Cavet (2001). "[http://www.ncbi.nlm.nih.gov/pubmed/11407113 Microbial Metallothioneins]". Advances in Microbial Physiology 44: 183-213
Rosen1996
Barry P. Rosen (August 1996). "[http://dx.doi.org/10.1007/s007750050053 Bacterial resistance to heavy metals and metalloids]". Journal of Biological Inorganic Chemistry 1(4): 273-277
Rosen2009
Barry P. Rosen and Zijuan Liu (April 2009). "[http://dx.doi.org/10.1016/j.envint.2008.07.023 Transport pathways for arsenic and selenium: A minireview]". Environment International 35(3): 512-515
Schwartz2008
Russel Schwartz (2008). Biological modeling and simulation: a survey of practical models, algorithms, and numerical methods MIT Press. ISBN 978-0-262-19584-3
Shi1992
Jianguo Shi, William P. Lindsay, James W. Huckle (June 1992). "[http://dx.doi.org/10.1016/0014-5793(92)80509-F Cyanobacterial metallothionein gene expressed in Escherichia coli: Metal-binding properties of the expressed protein]". FEBS Letters 303(2-3): 159-163
Summers2009
Anne O. Summers (April 2009). "[http://dx.doi.org/10.1016/j.mib.2009.02.003 Damage control: regulating defenses against toxic metals and metalloids]". Current Opinion in Microbiology 12(2): 138-144
Tisa1989
Louis S. Tisa and Barry P. Rosen (January 1990). "[http://www.ncbi.nlm.nih.gov/pubmed/1688427 Molecular characterization of an anion pump. The ArsB protein is the membrane anchor for the ArsA protein]". The journal of biological chemistry 265(1): 190-194
Turner1995
Jennifer S. Turner, Nigel J. Robinson and Amit Gupta (March 1995). "[http://dx.doi.org/10.1007/BF01569937 Construction of Zn2+/Cd2+-tolerant cyanobacteria with a modified metallothionein divergon: Further analysis of the function and regulation of smt]". Journal of Industrial Microbiology and Biotechnology 14(3-4): 259-264
Walsby1978
A.E. Walsby (April 1979). "[http://dx.doi.org/10.1016/0022-2836(79)90281-X Average thickness of the gas vesicle wall in Anabaena flos-aquae]". Journal of Molecular Biology 129(2): 279-285
Walsby1994
A.E. Walsby (March 1994). "[http://www.ncbi.nlm.nih.gov/pubmed/8177173 Gas Vesicles]". Microbiological reviews 58(1): 94-144

Miscellaneous:

  • [http://ginkgobioworks.com/cgi/primer.cgi Primer design Bioworks]
  • [http://openwetware.org/wiki/The_BioBricks_Foundation:Standards/Technical/Measurement Promotor measurement]
  • [http://openwetware.org/wiki/Main_Page OpenWetWare]
  • [http://www.hgsc.bcm.tmc.edu/projects/microbial/microbial-detail.xsp?project_id=105 E. coli DH10B genome] (with BLAST)