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- | ==Parameters== | + | ==Populations== |
- | <br>
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- | <html><head><title>Parameter</title>
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- | <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
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- | <meta http-equiv="Content-Style-Type" content="text/css">
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- | <style type="text/css"><!--
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- | body {
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- | margin: 5px 5px 5px 5px;
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- | background-color: #ffffff;
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- | }
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- | /* ========== Text Styles ========== */
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- | hr { color: #000000}
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- | body, table /* Normal text */
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- | {
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- | font-size: 10pt;
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- | font-family: 'Arial', 'Helvetica', sans-serif;
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- | font-style: normal;
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- | font-weight: normal;
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- | color: #000000;
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- | text-decoration: none;
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- | }
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- | span.rvts1 /* Heading */
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- | {
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- | font-weight: bold;
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- | color: #0000ff;
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- | }
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- | span.rvts2 /* Subheading */
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- | {
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- | font-weight: bold;
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- | color: #000080;
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- | }
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- | span.rvts3 /* Keywords */
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- | {
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- | font-style: italic;
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- | color: #800000;
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- | }
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- | a.rvts4, span.rvts4 /* Jump 1 */
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- | {
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- | color: #008000;
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- | text-decoration: underline;
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- | }
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- | a.rvts5, span.rvts5 /* Jump 2 */
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- | {
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- | color: #008000;
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- | text-decoration: underline;
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- | }
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- | span.rvts6
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- | {
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- | font-size: 11pt;
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- | font-family: 'Times New Roman', 'Times', serif;
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- | font-weight: bold;
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- | color: #000000;
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- | }
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- | span.rvts7
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- | {
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- | font-size: 11pt;
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- | font-family: 'Calibri';
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- | color: #000000;
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- | }
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- | span.rvts8
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- | {
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- | font-size: 11pt;
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- | font-family: 'Times New Roman', 'Times', serif;
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- | color: #000000;
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- | }
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- | span.rvts9
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- | {
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- | font-size: 11pt;
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- | font-family: 'Times New Roman', 'Times', serif;
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- | }
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- | /* ========== Para Styles ========== */
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- | p,ul,ol /* Paragraph Style */
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- | {
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- | text-align: left;
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- | text-indent: 0px;
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- | padding: 0px 0px 0px 0px;
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- | margin: 0px 0px 0px 0px;
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- | }
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- | .rvps1 /* Centered */
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- | {
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- | text-align: center;
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- | }
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- | .rvps2
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- | {
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- | line-height: 1.15;
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- | margin: 0px 0px 13px 0px;
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- | }
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- | --></style>
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- | </head>
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- | <body>
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- | | + | |
- | <div><table width=943 border=1 cellpadding=0 cellspacing=-1 style="border-width: 0px; border-collapse: collapse;">
| + | |
- | <tr valign=top>
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- | <td width=64 height=20 valign=top style="border-width : 1px; border-color: #000000; border-style: solid; background-color: #c2d69a;">
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- | <p class=rvps1><span class=rvts6>Parameter</span></p>
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- | </td>
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- | <td width=266 height=20 valign=top style="border-width : 1px; border-color: #000000; border-style: solid; border-left: none; background-color: #c2d69a;">
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- | <p class=rvps1><span class=rvts6>Description</span></p>
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- | </td>
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- | <td width=307 height=20 valign=top style="border-width : 1px; border-color: #000000; border-style: solid; border-left: none; background-color: #c2d69a;">
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- | <p class=rvps1><span class=rvts6>Value</span></p>
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- | </td>
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- | <td width=109 height=20 valign=top style="border-width : 1px; border-color: #000000; border-style: solid; border-left: none; background-color: #c2d69a;">
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- | <p class=rvps1><span class=rvts6>Units</span></p>
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- | </td>
| + | |
- | <td width=147 height=20 valign=top style="border-width : 1px; border-color: #000000; border-style: solid; border-left: none; background-color: #c2d69a;">
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- | <p class=rvps1><span class=rvts6>Reference</span></p>
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- | </td>
| + | |
- | </tr>
| + | |
- | <tr valign=top>
| + | |
- | <td width=64 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; background-color: #eaf1dd;">
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- | <p class=rvps1><span class=rvts7>α</span></p>
| + | |
- | </td>
| + | |
- | <td width=266 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
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- | <p class=rvps1><span class=rvts8>Growth rate constant of bacteria population</span></p>
| + | |
- | </td>
| + | |
- | <td width=307 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
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- | <p class=rvps1><span class=rvts8>1</span></p>
| + | |
- | </td>
| + | |
- | <td width=109 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>hr^-1</span></p>
| + | |
- | </td>
| + | |
- | <td width=147 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
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- | <p class=rvps1><span class=rvts8>Experimentally estimated</span></p>
| + | |
- | </td>
| + | |
- | </tr>
| + | |
- | <tr valign=top>
| + | |
- | <td width=64 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; background-color: #eaf1dd;">
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- | <p class=rvps1><span class=rvts8>C</span></p>
| + | |
- | </td>
| + | |
- | <td width=266 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
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- | <p class=rvps1><span class=rvts8>Carrying capacity</span></p>
| + | |
- | </td>
| + | |
- | <td width=307 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>1.25E+09</span></p>
| + | |
- | </td>
| + | |
- | <td width=109 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>Bacteria/volume</span></p>
| + | |
- | </td>
| + | |
- | <td width=147 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>Experimentally estimated</span></p>
| + | |
- | </td>
| + | |
- | </tr>
| + | |
- | <tr valign=top>
| + | |
- | <td width=64 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>k</span></p>
| + | |
- | </td>
| + | |
- | <td width=266 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>Adsorption rate</span></p>
| + | |
- | </td>
| + | |
- | <td width=307 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>2.10E-07</span></p>
| + | |
- | </td>
| + | |
- | <td width=109 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>ml/hr</span></p>
| + | |
- | </td>
| + | |
- | <td width=147 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>[3]</span></p>
| + | |
- | </td>
| + | |
- | </tr>
| + | |
- | <tr valign=top>
| + | |
- | <td width=64 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>b</span></p>
| + | |
- | </td>
| + | |
- | <td width=266 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>Burst size</span></p>
| + | |
- | </td>
| + | |
- | <td width=307 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>176</span></p>
| + | |
- | </td>
| + | |
- | <td width=109 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>Number of phages</span></p>
| + | |
- | </td>
| + | |
- | <td width=147 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8><a href="https://2009.igem.org/Team:LCG-UNAM-Mexico:BSD#Simulated_BSD">Molecular simulations</a>
| + | |
- | </span></p>
| + | |
- | </td>
| + | |
- | </tr>
| + | |
- | <tr valign=top>
| + | |
- | <td width=64 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts7>μi</span></p>
| + | |
- | </td>
| + | |
- | <td width=266 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>Infected bacteria death rate</span></p>
| + | |
- | </td>
| + | |
- | <td width=307 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>[0 25]</span></p>
| + | |
- | </td>
| + | |
- | <td width=109 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>hr^-1</span></p>
| + | |
- | </td>
| + | |
- | <td width=147 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>Estimated</span></p>
| + | |
- | </td>
| + | |
- | </tr>
| + | |
- | <tr valign=top>
| + | |
- | <td width=64 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts7>μp</span></p>
| + | |
- | </td>
| + | |
- | <td width=266 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>Phage decay rate</span></p>
| + | |
- | </td>
| + | |
- | <td width=307 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>2.10E-07</span></p>
| + | |
- | </td>
| + | |
- | <td width=109 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>hr^-1</span></p>
| + | |
- | </td>
| + | |
- | <td width=147 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>[4]</span></p>
| + | |
- | </td>
| + | |
- | </tr>
| + | |
- | <tr valign=top>
| + | |
- | <td width=64 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts7>τ</span></p>
| + | |
- | </td>
| + | |
- | <td width=266 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>Latency period</span></p>
| + | |
- | </td>
| + | |
- | <td width=307 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>0.2</span></p>
| + | |
- | </td>
| + | |
- | <td width=109 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>hr</span></p>
| + | |
- | </td>
| + | |
- | <td width=147 height=20 valign=bottom style="border-width : 1px; border-color: #000000; border-style: solid; border-top: none; border-left: none; background-color: #eaf1dd;">
| + | |
- | <p class=rvps1><span class=rvts8>[4]</span></p>
| + | |
- | </td>
| + | |
- | </tr>
| + | |
- | </table>
| + | |
- | </div>
| + | |
- | | + | |
- | </body></html>
| + | |
- | <center>Table 2 contains the parameters used for the equations.</center>
| + | |
| | | |
| ==Description of the system of nonlinear differential equations== | | ==Description of the system of nonlinear differential equations== |