Team:Newcastle/Promoter Library

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(Difference between revisions)
(Design)
(Design)
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==Design==
==Design==
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Template used to create the promoter sequences:
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'''Prefix...UpSpacer...-35...PromSpacer...-10...DownSpacer..Suffix'''
[[Image:Team_Newcastle_iGEM_Promoter_Library1.png|500px]]
[[Image:Team_Newcastle_iGEM_Promoter_Library1.png|500px]]
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[[Image:Team_Newcastle_iGEM_Promoter_Library2.png|500px]]
[[Image:Team_Newcastle_iGEM_Promoter_Library2.png|500px]]
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Template used to create the promoter sequences:
+
 
-
'''Prefix...UpSpacer...-35...PromSpacer...-10...DownSpacer..Suffix'''
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* '''BBPrefix''' - StandardBioBrickPrefix EcoR1 and Xba1 - gaattcgcggccgcttctagag
* '''BBPrefix''' - StandardBioBrickPrefix EcoR1 and Xba1 - gaattcgcggccgcttctagag
* '''UpSpacer''' - attta - consensus sigA 5 bases 5'
* '''UpSpacer''' - attta - consensus sigA 5 bases 5'

Revision as of 20:55, 21 October 2009


Promoter Library

Introduction

As a part of our project we wish to create a library of SigmaA promoters and characterise them based on their stregnths.

Novelty in this sub-project

A library of promoters with different strengths would be very useful for engineering biological devices. Promoters' strength can be compared with their PoPS values. However measuring the PoPS is not a trivial process. We can instead meausure their strengths relatively.

Design

Template used to create the promoter sequences: Prefix...UpSpacer...-35...PromSpacer...-10...DownSpacer..Suffix

Team Newcastle iGEM Promoter Library1.png

Team Newcastle iGEM Promoter Library2.png


  • BBPrefix - StandardBioBrickPrefix EcoR1 and Xba1 - gaattcgcggccgcttctagag
  • UpSpacer - attta - consensus sigA 5 bases 5'
  • -35 - TTGACA
  • PromSpacer - length 17 - consensus ttttatttaaattatga
  • -10 - TATAAT
  • DownSpacer (from ackA)- ggaaaag
  • BBSuffix - Standard BioBrick suffix Spe1 and Pst1 - tactagtagcggccgctgcag

Variances

  1. BBPrefix...UpSpacer...N-35... PromSpacer...N-10...DownSpacer..BBSuffix
  2. BBPrefix...UpSpacerNN...-35...NNPromSpacerNN...-10...NNDownSpacer..BBSuffix
  3. BBPrefix...UpSpacer...-35... 18N’s...-10...DownSpacer..BBSuffix

Variance 1

Variance 2

Variance 3

Lab Work Strategies

Other Presentations and Diagrams




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