| Description | Oligo Name | Sequence | Length
|
| amplifies first half of E. coli α-galactosidase gene adds SalI site (fwd) | HI-SalI-F | CATGTCGACATGATGTCTGCACCCAAAATT | 30
|
| amplifies first half of α-galactosidase gene adds BamHI site (rev) | HI-BamHI-attP-R | ATGGGATCCCCCCCAACTGAGAGAACTCAAAGGTTACCCCAGTTGGGGGTAACGCAGCGTAGCTGG | 66
|
| amplifies second half of α-galactosidase gene, adds KpnI site (fwd) | H2-KpnI-attP-F | CATGGTACCCCCCCAACTGAGAGAACTCAAAGGTTACCCCAGTTGGGGGCGTTTTACCTGGAGCTGG | 67
|
| amplifies second half of α-galactosidase gene, adds XbaI site (rev) | H2-XbaI-R | ATGTCTAGAGGTCAGCAGCGTCTGT | 25
|
| Amplifes any biobrick, adds EcoRV end for ligation into EcoRV blunt ends (fwd) | Prefix-EcoRV-F | ATCGAATTCGCGGCCGCTTCTAG | 23
|
| Amplifes any biobrick, adds EcoRV end for ligation into EcoRV blunt ends (rev) | Suffix-EcoRV-R | ATCCTGCAGCGGCCGCTACTAGTA | 24
|
| B0034 RBS primer, use with VF2 (fwd) | Prefix-RBS | GGCCGCTTCTAGAGAAAGAGG | 21
|
| B0034 RBS primer, use with VR (rev) | Suffix-RBS | TTTCTCCTCTTTCTCTAGATGCGG | 24
|
| ordered to add Plac and RBS to the cI ORF (project 2008) | Plac-RBS-F | GAATTCGCGGCCGCTTCTAGAGAATTGTGAGCGGATAACAATTGACATTGTGAGCGGATAA CAAGATACTGAGCACATACTAGAGAAAGAGGAGAAATACTAG | 103
|
| amplifies ΦC31 int, adds RBS, Prefix, changes start codon to ATG, changes G to A maintaining glutamic acid codon and eliminating EcoRI site (fwd) | Int-BBa-F | GAATTCGCGGCCGCTTCTAGAGAAAGAGGAGAAATACTAGATGGACACGTACGCGGGTGCTT ACGACCGTCAGTCGCGCGAGCGCGAAAATTCG | 94
|
| amplifies ΦC31 int, adds suffix, changes stop codon to double TAA (rev) | Int-DSC-R | CTGCAGCGGCCGCTACTAGTATTATTACGCCGCTACGTCTTCCGTG | 46
|
| amplifies T7 Gene 6 exonuclease, adds ATG start codon, adds BBa prefix (fwd2) | T7gene6-F2 | GAATTCGCGGCCGCTTCTAGATGGCACTTCTTGACCTTAAAC | 42
|
| does not add standard start codon (fwd) | T7gene6-F | CAATGGAATTCGCGGCCGCTTCTAGATGGCACTTCTTGACCTTAAA | 46
|
| amplifies T7 Gene 6 exonuclease, adds double TAA stop codon, adds BBa suffix (rev2) | T7G6-R2 | CTGCAGCGGCCGCTACTAGTATTATTACGGTCTCCACAGGTAAATCTC | 48
|
| does not add standard stop codon (rev) | T7gene6-R | CAATTTCTGCAGCGGCCGCTACTAGTACTACGGTCTCCACAGG | 43
|
| amplifies T7 G6 makes product for cross over PCR with pmeI cross over PCR product | T7g6-RXO-RBS | CTAGTATTTCTCCTCTTTCTCTAGTATTATTACGGTCTCCACAGGTAAATCTC | 53
|
| Amplifies T7 gene 5 exonuclease, a 3′-5′ exonuclease, adds BBa prefix (fwd) | T7gene5-F | CAATGGAATTCGCGGCCGCTTCTAGATGATCGTTTCTGACATCGAA | 46
|
| Amplifies T7 gene 5 exonuclease, a 3′-5′ exonuclease, adds BBa suffix (rev) | T7gene5-R | CAATTTCTGCAGCGGCCGCTACTAGTATCAGTGGCAAATCGCCCAATTAGG | 51
|
| amplifies phbA (fwd) | phbA-F | GAATTCGCGGCCGCTTCTAGATGAGCAATCCCTCGATCG | 39
|
| amplifies phbA, non standard stop codon (rev) | phbB-R | CTGCAGCGGCCGCTACTAGTATTACAGGCGTTCCACGCACATGG | 44
|
| amplifies phbB (fwd) | phbB-F | GAATTCGCGGCCGCTTCTAGATGAGCAGGGTAGCACTGG | 39
|
| amplifies phbB, non standard stop codon (rev) | phbB-R | CTGCAGCGGCCGCTACTAGTA TCAGGCGAAGTACTGGCCGC | 41
|
| amplifies phbC (fwd) | phbC-F | GAATTCGCGGCCGCTTCTAGATGACAGCAGAGAAGGCTGAGG | 42
|
| amplifies phbC, non standard stop codon (rev) | phbC-R | CTGCAGCGGCCGCTACTAGTATCAGGCGCGCACGCGCACGTAGG | 44
|
| amplifes RFP with BBa_J23118 constitutive promoter (BBa_K093012) anneals to promoter sequence (fwd) | RFP-BamHI-F | CATGGATCCTTGACGGCTAGCTCAGTC | 27
|
| anneals to RFP ORF sequence adds TT (BBa_B1002) adds KpnI site, but don't use it to clone, the ORF contains other KpnI sites | RFP-KpnII-TT-R (rev) | ATGGGTACCAAAAAAAAACCCCGCCGAAGCGGGGTTTTTTTTTCTCTAGTAGCGATCTACACTAGCACTATCA | 73
|
| amplifies pmeI from Pseudomonas mendocina NEB698, used to amplify synthetic ORF to add RBS (fwd) | PmeIR-F | GAATTCCGGCCGCTTCTAGAGAAAGAGGAGAAATACTAGATGACAACAAACTCCCCCTCAG | 61
|
| amplifies pmeI from Pseudomonas mendocina NEB698, or our synthetic ORF (rev) | PmeIR-R | CTGCAGCGGCCGCTACTAGTATTATTAAACCGTACTTCGCCCCCG | 45
|
| sense oligo for RecA-lexA hybrid promoter (BBa_K093000) 5' EcoRI overhang (fwd) | recA-F | AATTCGCGGCCGCTTCTAGAGTACAAAACACTTGATACTGTATATATATACAGTATAATTGCTTCAACATA | 71
|
| sense oligo for RecA lexA hybrid promoter (BBa_K093000) 3' SpeI overhang (rev) | recA-R | CTAGTATGTTGAAGCAATTATACTGTATATATATACAGTATCAAGTGTTTTGTACTCTAGAAGCGGCCGCG | 71
|
| amplifies RFP ORF adds RBS (fwd) | RFP-RBS-F | GAATTCCGGCCGCTTCTAGAGAAAGAGGAGAAATACTAGATGGCTTCCTCCGAAGACG | 58
|
| amplifies RFP ORF, creates product for crossover PCR | RFP-RXO | GATGCCTGGCTCTAGTATTATTAAGCACCGGTGG | 34
|
| Amplifies RK2 oriT adds MunI site (compatible end with EcoRI) (fwd) | RK2E-F | CATCAATTGCCGGCCAGCCTCGCAGAGCA | 29
|
| Amplifies RK2 oriT adds EcoRI site, adds attB site in the forward orientation (rev) | RK2E-R | ATGGAATTCCGCGCCCGGGGAGCCCAAGGGCACGCCCTGGCACCCCGGGCAGGATAGGTGAAGT | 64
|
| ampifies RK2 oriT adds PstI site, adds attB in the reverse orientation (fwd) | RK2-FP | CATCTGCAGCGCGCCCGGGGAGCCCAAGGGCACGCCCTGGCACCCCGGCCAGCCTCGCAGAGCA | 64
|
| amplifes RK2 oriT adds Mph1103I site (compatible end with PstI) (rev) | RK2-RP | ATGATGCATCCGGGCAGGATAGGTGAAGT | 29
|
| BBa sequencing/colony PCR primer (fwd) | VF2 | TGCCACCTGACGTCTAAGAA | 20
|
| BBa sequencing/colony PCR primer (rev) | VR | ATTACCGCCTTTGAGTGAGC | 20
|
| sequencing c31 int gene anneals internally
| Int seq F
| cgtgcaacgtcagcatggcg
|
| sequenceing c31 int gene anneals internally
| Int seq2 R
| cgccatgctgacgttgcacg
|
| sequenceing c31 int gene anneals internally
| Int seq3 R
| caccaccaccggattacgtc
|
| was designed to fix an error in another PCR primer that was thrown out. Could still amplify biobricked c31 int
| Int RBS
| GAATTCGCGGCCGCTTCTAGAGAAAGAGGAGAAATACTAGATGGAC
|
| sequencing primer for pKNG101 derived vectors (pFB9XXXX)
| pKNG101 F
| CTACATATCACAACGTGCGTG
|
| sequencing primer for pKNG101 derived vectors (pFB9XXXX)
| pKNG101 R
| CTCCGTCTACTGTACGATACAC
|
| linker+ for synthetic attP cloning into pKNG101 derived vectors
| FB attP BamHI F
| CTCAGTTGGGGGG
|
| linker- for synthetic attP cloning into pKNG101 derived vectors
| FB attP BamHI R
| GATCCCCC
|
| linker+ for synthetic attP cloning into pKNG101 derived vectors
| FB attP SalI F
| TCGACCCC
|
| linker- for synthetic attP cloning into pKNG101 derived vectors
| FB attP SalI R
| CCCAGTTGGGGG
|
| Bba linker+ attB
| BBa attB EcoRI F
| AATTCGCGGCCGCTTCTAGAG
|
| Bba linker- attB
| BBa attB EcoRI R
| CACCCTCTAGAAGCGGCCGCG
|
| Bba linker+ attB
| BBa attB PstI F
| CGCGTACTAGTAGCGGCCGCTGCA
|
| Bba linker- attB
| BBa attB PstI R
| GCGGCCGCTACTAGTA
|
| BBa linker+ attP
| BBa attP EcoRI fwd
| aattcgcggccgcttctagagCCC
| 24
|
| BBa linker- attP
| BBa attP EcoRI rev
| CCCAGTTGGGGctctagaagcggccgcg
|
| BBa linker+ attP
| BBa attP PstI fwd
| CTCAGTTGGGGGGtactagtagcggccgctgca
| 33
|
| BBa linker- attP
| BBa attP PstI rev
| gcggccgctactagtaCCCC
| 20
|
| attB +strand
| attB34 TG F
| GGTGCCAGGGCGTGCCCTGGGGCTCCCCGGG
|
| attB -strand
| attB34 TG R
| CGCGCCCGGGGAGCCCCAGGGCACGCCCTGG
|
| attB +strand
| attB34 CT F
| GGTGCCAGGGCGTGCCCCTGGGCTCCCCGGG
|
| attB -strand
| attB34 CT R
| CGCGCCCGGGGAGCCCAGGGGCACGCCCTGG
|
| attB +strand
| attB34 TT F
| GGTGCCAGGGCGTGCCCTTGGGCTCCCCGGG
|
| attB -strand
| attB34 TT R
| CGCGCCCGGGGAGCCCAAGGGCACGCCCTGG
|
| attB +strand
| attB 34 GA F
| GGTGCCAGGGCGTGCCCGAGGGCTCCCCGGG
|
| attB -strand
| attB34 GA R
| CGCGCCCGGGGAGCCCTCGGGCACGCCCTGG
|
| attB +strand
| attB34 AC F
| GGTGCCAGGGCGTGCCCACGGGCTCCCCGGG
|
| attB -strand
| attB34 AC R
| CGCGCCCGGGGAGCCCGTGGGCACGCCCTGG
|
| attB +strand
| attB34 GG F
| GGTGCCAGGGCGTGCCCGGGGGCTCCCCGGG
|
| attB -strand
| attB34 GG R
| CGCGCCCGGGGAGCCCCCGGGCACGCCCTGG
|
| attP + strand
| attP39 TG F
| CAACTGGGGTAACCTTGGAGTTCT
|
| attP - strand
| attP39 TG R
| CCAACTGAGAGAACTCCAAGGTTAC
|
| attP + strand
| attP39 CT F
| CAACTGGGGTAACCTCTGAGTTCT
|
| attP - strand
| attP39 CT R
| CCAACTGAGAGAACTCAGAGGTTAC
|
| attP + strand
| attP39 TT F
| CAACTGGGGTAACCTTTGAGTTCT
|
| attP - strand
| attP39 TT R
| CCAACTGAGAGAACTCAAAGGTTAC
|
| attP + strand
| attP39 GA F
| CAACTGGGGTAACCTGAGAGTTCT
|
| attP - strand
| attP39 GA R
| CCAACTGAGAGAACTCTCAGGTTAC
|
| attP + strand
| attP39 AC F
| CAACTGGGGTAACCTACGAGTTCT
|
| attP - strand
| attP39 AC R
| CCAACTGAGAGAACTCGTAGGTTAC
|
| attP + strand
| attP39 GG F
| CAACTGGGGTAACCTGGGAGTTCT
|
| attP - strand
| attP39 GG R
| CCAACTGAGAGAACTCCCAGGTTAC
|
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