Team:Groningen/Literature

From 2009.igem.org

(Difference between revisions)
(Made table of metal related literature by subject.)
(Added Robinson2001)
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|[[Team:Groningen/Literature#Shi1992|Shi1992]]
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|[[Team:Groningen/Literature#Shi1992|Shi1992]], [[Team:Groningen/Literature#Robinson2001|Robinson2001]]
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|[[Team:Groningen/Literature#Meng2004|Meng2004]], [[Team:Groningen/Literature#Rosen2009|Rosen2009]]
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|'''[[Team:Groningen/Literature#Meng2004|Meng2004]]''', [[Team:Groningen/Literature#Rosen2009|Rosen2009]]
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|[[Team:Groningen/Literature#Tisa1989|Tisa1989]], [[Team:Groningen/Literature#Carlin1995|Carlin1995]], [[Team:Groningen/Literature#Rosen1996|Rosen1996]], [[Team:Groningen/Literature#Meng2004|Meng2004]], [[Team:Groningen/Literature#Summers2009|Summers2009]]
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|[[Team:Groningen/Literature#Tisa1989|Tisa1989]], [[Team:Groningen/Literature#Carlin1995|Carlin1995]], [[Team:Groningen/Literature#Rosen1996|Rosen1996]], '''[[Team:Groningen/Literature#Meng2004|Meng2004]]''', [[Team:Groningen/Literature#Summers2009|Summers2009]]
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|[[Team:Groningen/Literature#Carlin1995|Carlin1995]], [[Team:Groningen/Literature#Rosen1996|Rosen1996]], [[Team:Groningen/Literature#Chen1997|Chen1997]], [[Team:Groningen/Literature#Carlin1995|Kostal2004]], [[Team:Groningen/Literature#Summers2009|Summers2009]]
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|[[Team:Groningen/Literature#Carlin1995|Carlin1995]], [[Team:Groningen/Literature#Rosen1996|Rosen1996]], '''[[Team:Groningen/Literature#Chen1997|Chen1997]]''', '''[[Team:Groningen/Literature#Carlin1995|Kostal2004]]''', [[Team:Groningen/Literature#Summers2009|Summers2009]]
|[[Team:Groningen/Literature#Chen1997|Chen1997]], [[Team:Groningen/Literature#Lin2007-1|Lin2007-1/2]], [[Team:Groningen/Literature#Summers2009|Summers2009]]
|[[Team:Groningen/Literature#Chen1997|Chen1997]], [[Team:Groningen/Literature#Lin2007-1|Lin2007-1/2]], [[Team:Groningen/Literature#Summers2009|Summers2009]]
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!Sb
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|[[Team:Groningen/Literature#Meng2004|Meng2004]]
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|'''[[Team:Groningen/Literature#Meng2004|Meng2004]]'''
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|[[Team:Groningen/Literature#Tisa1989|Tisa1989]], [[Team:Groningen/Literature#Carlin1995|Carlin1995]], [[Team:Groningen/Literature#Rosen1996|Rosen1996]], [[Team:Groningen/Literature#Meng2004|Meng2004]], [[Team:Groningen/Literature#Summers2009|Summers2009]]
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|[[Team:Groningen/Literature#Tisa1989|Tisa1989]], [[Team:Groningen/Literature#Carlin1995|Carlin1995]], [[Team:Groningen/Literature#Rosen1996|Rosen1996]], '''[[Team:Groningen/Literature#Meng2004|Meng2004]]''', [[Team:Groningen/Literature#Summers2009|Summers2009]]
|[[Team:Groningen/Literature#Carlin1995|Carlin1995]], [[Team:Groningen/Literature#Rosen1996|Rosen1996]], [[Team:Groningen/Literature#Summers2009|Summers2009]]
|[[Team:Groningen/Literature#Carlin1995|Carlin1995]], [[Team:Groningen/Literature#Rosen1996|Rosen1996]], [[Team:Groningen/Literature#Summers2009|Summers2009]]
|[[Team:Groningen/Literature#Chen1997|Chen1997]], [[Team:Groningen/Literature#Lin2007-1|Lin2007-1/2]], [[Team:Groningen/Literature#Summers2009|Summers2009]]
|[[Team:Groningen/Literature#Chen1997|Chen1997]], [[Team:Groningen/Literature#Lin2007-1|Lin2007-1/2]], [[Team:Groningen/Literature#Summers2009|Summers2009]]
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:Arthur Carlin, Weiping Shi, Saibal Dey and Barry P. Rosen (February 1995). "[http://www.ncbi.nlm.nih.gov/pubmed/7860609 The ars Operon of Escherichia coli Confers Arsenical and Antimonial Resistance]". ''Journal of Bacteriology'' '''177(4)''': 981-986
:Arthur Carlin, Weiping Shi, Saibal Dey and Barry P. Rosen (February 1995). "[http://www.ncbi.nlm.nih.gov/pubmed/7860609 The ars Operon of Escherichia coli Confers Arsenical and Antimonial Resistance]". ''Journal of Bacteriology'' '''177(4)''': 981-986
;Chen1997 {{anchor|Chen1997}}
;Chen1997 {{anchor|Chen1997}}
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:Yanxiang Chen and Barry P. Rosen (May 1997). "[http://www.ncbi.nlm.nih.gov/pubmed/9162059 Metalloregulatory Properties of the ArsD Repressor]". ''The Journal of Biological Chemistry'' '''272(22)''': 14257-14262
+
:{{star}} Yanxiang Chen and Barry P. Rosen (May 1997). "[http://www.ncbi.nlm.nih.gov/pubmed/9162059 Metalloregulatory Properties of the ArsD Repressor]". ''The Journal of Biological Chemistry'' '''272(22)''': 14257-14262
;Kelly2009 {{anchor|Kelly2009}}
;Kelly2009 {{anchor|Kelly2009}}
:Jason R. Kelly, Adam J. Rubin, Joseph H. Davis, ''et al'' (March 2009). "[http://dx.doi.org/10.1186/1754-1611-3-4 Measuring the activity of BioBrick promoters using an in vivo reference standard]". ''Journal of Biological Engineering'' '''3''': 4
:Jason R. Kelly, Adam J. Rubin, Joseph H. Davis, ''et al'' (March 2009). "[http://dx.doi.org/10.1186/1754-1611-3-4 Measuring the activity of BioBrick promoters using an in vivo reference standard]". ''Journal of Biological Engineering'' '''3''': 4
;Kostal2004 {{anchor|Kostal2004}}
;Kostal2004 {{anchor|Kostal2004}}
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:Jan Kostal, Rosanna Yang, Cindy H. Wu, ''et al'' (August 2004). "[http://dx.doi.org/10.1128/AEM.70.8.4582-4587.2004 Enhanced Arsenic Accumulation in Engineered Bacterial Cells Expressing ArsR]". ''Applied and Environmental Microbiology'' 70(8): 4582–4587
+
:{{star}} Jan Kostal, Rosanna Yang, Cindy H. Wu, ''et al'' (August 2004). "[http://dx.doi.org/10.1128/AEM.70.8.4582-4587.2004 Enhanced Arsenic Accumulation in Engineered Bacterial Cells Expressing ArsR]". ''Applied and Environmental Microbiology'' 70(8): 4582–4587
;Gilchrist2007 {{anchor|Gilchrist2007}}
;Gilchrist2007 {{anchor|Gilchrist2007}}
:Michael A. Gilchrist (2007). "[http://dx.doi.org/10.1093/molbev/msm169 Combining Models of Protein Translation and Population Genetics to Predict Protein Production Rates from Codon Usage Patterns]". ''Molecular Biology and Evolution'' '''24(11)''': 2362-2372
:Michael A. Gilchrist (2007). "[http://dx.doi.org/10.1093/molbev/msm169 Combining Models of Protein Translation and Population Genetics to Predict Protein Production Rates from Codon Usage Patterns]". ''Molecular Biology and Evolution'' '''24(11)''': 2362-2372
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:Yung-Feng Lin, Jianbo Yang and Barry P. Rosen (December 2007). "[http://dx.doi.org/10.1007/s10863-007-9113-y ArsD: an As(III) metallochaperone for the ArsAB As(III)-translocating ATPase]". ''Journal of Bioenergetics and Biomembranes'' '''39''': 453-458
:Yung-Feng Lin, Jianbo Yang and Barry P. Rosen (December 2007). "[http://dx.doi.org/10.1007/s10863-007-9113-y ArsD: an As(III) metallochaperone for the ArsAB As(III)-translocating ATPase]". ''Journal of Bioenergetics and Biomembranes'' '''39''': 453-458
;Meng2004 {{anchor|Meng2004}}
;Meng2004 {{anchor|Meng2004}}
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:Yu-Ling Meng, Zijuan Liu and Barry P. Rosen (February 2004). "[http://dx.doi.org/10.1074/jbc.M400037200 As(III) and Sb(III) Uptake by GlpF and Efflux by ArsB in Escherichia coli]". ''Journal of Biological Chemistry'' '''279''': 18334-18341
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:{{star}} Yu-Ling Meng, Zijuan Liu and Barry P. Rosen (February 2004). "[http://dx.doi.org/10.1074/jbc.M400037200 As(III) and Sb(III) Uptake by GlpF and Efflux by ArsB in Escherichia coli]". ''Journal of Biological Chemistry'' '''279''': 18334-18341
;Neves1999 {{anchor|Neves1999}}
;Neves1999 {{anchor|Neves1999}}
:Ana Rute Neves, Ana Ramos, Marta C. Nunes, ''et al'' (1999). "[http://dx.doi.org/10.1002/(SICI)1097-0290(19990720)64%3A2%3C200%3A%3AAID-BIT9%3E3.0.CO%3B2-K In vivo nuclear magnetic resonance studies of glycolytic kinetics in ''Lactococcus lactis'']". ''Biotechnology and Bioengineering'' '''64''': 200-212
:Ana Rute Neves, Ana Ramos, Marta C. Nunes, ''et al'' (1999). "[http://dx.doi.org/10.1002/(SICI)1097-0290(19990720)64%3A2%3C200%3A%3AAID-BIT9%3E3.0.CO%3B2-K In vivo nuclear magnetic resonance studies of glycolytic kinetics in ''Lactococcus lactis'']". ''Biotechnology and Bioengineering'' '''64''': 200-212
;Poole1977 {{anchor|Poole1977}}
;Poole1977 {{anchor|Poole1977}}
:R.K. Poole (1977). "[http://mic.sgmjournals.org/cgi/content/abstract/98/1/177 Fluctuations in Buoyant Density during the Cell Cycle of Escherichia coli K12]". ''Journal of General Microbiology'' '''98''': 177-186
:R.K. Poole (1977). "[http://mic.sgmjournals.org/cgi/content/abstract/98/1/177 Fluctuations in Buoyant Density during the Cell Cycle of Escherichia coli K12]". ''Journal of General Microbiology'' '''98''': 177-186
 +
;Robinson2001
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:Nigel J. Robinson, Simon K. Whitehall and Jennifer S. Cavet (2001). "[http://www.ncbi.nlm.nih.gov/pubmed/11407113 Microbial Metallothioneins]". ''Advances in Microbial Physiology'' '''44''': 183-213
;Rosen1996 {{anchor|Rosen1996}}
;Rosen1996 {{anchor|Rosen1996}}
:Barry P. Rosen (August 1996). "[http://dx.doi.org/10.1007/s007750050053 Bacterial resistance to heavy metals and metalloids]". ''Journal of Biological Inorganic Chemistry'' '''1(4)''': 273-277
:Barry P. Rosen (August 1996). "[http://dx.doi.org/10.1007/s007750050053 Bacterial resistance to heavy metals and metalloids]". ''Journal of Biological Inorganic Chemistry'' '''1(4)''': 273-277

Revision as of 12:38, 28 July 2009

[http://2009.igem.org/Team:Groningen http://2009.igem.org/wiki/images/f/f1/Igemhomelogo.png]
Literature

Currently many references are connected to the paragraph its information has been used.

Our metal related literature by subject:

Importers Exporters Accumulators Promoters
GlpF [http://partsregistry.org/Part:BBa_K190018 HmtA] ArsB ArsR ArsD SmtA MymT
Cu Shi1992
Zn Shi1992, Robinson2001
As Meng2004, Rosen2009 Tisa1989, Carlin1995, Rosen1996, Meng2004, Summers2009 Carlin1995, Rosen1996, Chen1997, Kostal2004, Summers2009 Chen1997, Lin2007-1/2, Summers2009
Cd Shi1992
Sb Meng2004 Tisa1989, Carlin1995, Rosen1996, Meng2004, Summers2009 Carlin1995, Rosen1996, Summers2009 Chen1997, Lin2007-1/2, Summers2009
Hg Shi1992
Alon2007
Ensarija Star (soft edges).png Uri Alon (2007). Introduction to systems biology: design principles of biological circuits Chapman & Hall/CRC. ISBN 978-1-58488-642-6
Baldwin1995
W.W. Baldwin, Richard Myer, Nicole Powell, et al (August 1995). "[http://www.springerlink.com/content/nu1lkduf3w89fmd8 Buoyant density of Escherichia coli is determined solely by the osmolarity of the culture medium]". Archives of Microbiology 164(2): 155-157
Beyer2004
Andreas Beyer, Jens Hollunder, Heinz-Peter Nasheuer and Thomas Wilhelm (August 2004). "[http://dx.doi.org/10.1074/mcp.M400099-MCP200 Post-transcriptional Expression Regulation in the Yeast Saccharomyces cerevisiae on a Genomic Scale]". Molecular & Cellular Proteomics 3: 1083-1092
Bylund1991
J.E. Bylund, M.A. Haines, K. Walsh, et al (September 1991). "[http://jb.asm.org/cgi/content/abstract/173/17/5396 Buoyant density studies of several mecillinam-resistant and division mutants of Escherichia coli]". Journal of Bacteriology 173(17): 5396-5402
Carlin1995
Arthur Carlin, Weiping Shi, Saibal Dey and Barry P. Rosen (February 1995). "[http://www.ncbi.nlm.nih.gov/pubmed/7860609 The ars Operon of Escherichia coli Confers Arsenical and Antimonial Resistance]". Journal of Bacteriology 177(4): 981-986
Chen1997
Ensarija Star (soft edges).png Yanxiang Chen and Barry P. Rosen (May 1997). "[http://www.ncbi.nlm.nih.gov/pubmed/9162059 Metalloregulatory Properties of the ArsD Repressor]". The Journal of Biological Chemistry 272(22): 14257-14262
Kelly2009
Jason R. Kelly, Adam J. Rubin, Joseph H. Davis, et al (March 2009). "[http://dx.doi.org/10.1186/1754-1611-3-4 Measuring the activity of BioBrick promoters using an in vivo reference standard]". Journal of Biological Engineering 3: 4
Kostal2004
Ensarija Star (soft edges).png Jan Kostal, Rosanna Yang, Cindy H. Wu, et al (August 2004). "[http://dx.doi.org/10.1128/AEM.70.8.4582-4587.2004 Enhanced Arsenic Accumulation in Engineered Bacterial Cells Expressing ArsR]". Applied and Environmental Microbiology 70(8): 4582–4587
Gilchrist2007
Michael A. Gilchrist (2007). "[http://dx.doi.org/10.1093/molbev/msm169 Combining Models of Protein Translation and Population Genetics to Predict Protein Production Rates from Codon Usage Patterns]". Molecular Biology and Evolution 24(11): 2362-2372
Goudar1999
Chetan T. Goudara, Jagadeesh R. Sonnadb and Ronald G. Duggleby (January 1999). "[http://dx.doi.org/10.1016/S0167-4838(98)00247-7 Parameter estimation using a direct solution of the integrated Michaelis-Menten equation]". Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology 1429(2): 377-383
Hoefnagel2002
M.H.N. Hoefnagel, A. van der Burgt, D.E. Martens, et al (March 2002). "[http://dx.doi.org/10.1023/A:1020313409954 Time Dependent Responses of Glycolytic Intermediates in a Detailed Glycolytic Model of Lactococcus Lactis During Glucose Run-Out Experiments]". Molecular Biology Reports 29: 157-161
Lin2007-1
Yung-Feng Lin, Jianbo Yang and Barry P. Rosen (April 2007). "[http://dx.doi.org/10.1074/jbc.M700886200 ArsD Residues Cys12, Cys13, and Cys18 Form an As(III)-binding Site Required for Arsenic Metallochaperone Activity]". The Journal of Biological Chemistry 282(23): 16783–16791
Lin2007-2
Yung-Feng Lin, Jianbo Yang and Barry P. Rosen (December 2007). "[http://dx.doi.org/10.1007/s10863-007-9113-y ArsD: an As(III) metallochaperone for the ArsAB As(III)-translocating ATPase]". Journal of Bioenergetics and Biomembranes 39: 453-458
Meng2004
Ensarija Star (soft edges).png Yu-Ling Meng, Zijuan Liu and Barry P. Rosen (February 2004). "[http://dx.doi.org/10.1074/jbc.M400037200 As(III) and Sb(III) Uptake by GlpF and Efflux by ArsB in Escherichia coli]". Journal of Biological Chemistry 279: 18334-18341
Neves1999
Ana Rute Neves, Ana Ramos, Marta C. Nunes, et al (1999). "[http://dx.doi.org/10.1002/(SICI)1097-0290(19990720)64%3A2%3C200%3A%3AAID-BIT9%3E3.0.CO%3B2-K In vivo nuclear magnetic resonance studies of glycolytic kinetics in Lactococcus lactis]". Biotechnology and Bioengineering 64: 200-212
Poole1977
R.K. Poole (1977). "[http://mic.sgmjournals.org/cgi/content/abstract/98/1/177 Fluctuations in Buoyant Density during the Cell Cycle of Escherichia coli K12]". Journal of General Microbiology 98: 177-186
Robinson2001
Nigel J. Robinson, Simon K. Whitehall and Jennifer S. Cavet (2001). "[http://www.ncbi.nlm.nih.gov/pubmed/11407113 Microbial Metallothioneins]". Advances in Microbial Physiology 44: 183-213
Rosen1996
Barry P. Rosen (August 1996). "[http://dx.doi.org/10.1007/s007750050053 Bacterial resistance to heavy metals and metalloids]". Journal of Biological Inorganic Chemistry 1(4): 273-277
Rosen2009
Barry P. Rosen and Zijuan Liu (April 2009). "[http://dx.doi.org/10.1016/j.envint.2008.07.023 Transport pathways for arsenic and selenium: A minireview]". Environment International 35(3): 512-515
Schwartz2008
Russel Schwartz (2008). Biological modeling and simulation: a survey of practical models, algorithms, and numerical methods MIT Press. ISBN 978-0-262-19584-3
Shi1992
Jianguo Shi, William P. Lindsay, James W. Huckle (June 1992). "[http://dx.doi.org/10.1016/0014-5793(92)80509-F Cyanobacterial metallothionein gene expressed in Escherichia coli: Metal-binding properties of the expressed protein]". FEBS Letters 303(2-3): 159-163
Summers2009
Anne O. Summers (April 2009). "[http://dx.doi.org/10.1016/j.mib.2009.02.003 Damage control: regulating defenses against toxic metals and metalloids]". Current Opinion in Microbiology 12(2): 138-144
Tisa1989
Louis S. Tisa and Barry P. Rose (January 1990). "[http://www.ncbi.nlm.nih.gov/pubmed/1688427 Molecular characterization of an anion pump. The ArsB protein is the membrane anchor for the ArsA protein]". The journal of biological chemistry 265(1): 190-194

Miscellaneous:

  • [http://ginkgobioworks.com/cgi/primer.cgi Primer design Bioworks]
  • [http://openwetware.org/wiki/The_BioBricks_Foundation:Standards/Technical/Measurement Promotor measurement]
  • [http://openwetware.org/wiki/Main_Page OpenWetWare]
  • [http://www.hgsc.bcm.tmc.edu/projects/microbial/microbial-detail.xsp?project_id=105 E. coli DH10B genome] (with BLAST)