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Team:Aberdeen Scotland/modeling/downloads
From 2009.igem.org
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| - | == C Programs == | + | Most of our programing was written in C, to plot our results we used <html><a href="http://www.gnuplot.info/">GNUPlot</a></html> |
| + | |||
| + | = C Programs = | ||
| + | == Internal Dynamics == | ||
<html><a href="https://static.igem.org/mediawiki/2009/2/23/Internal_dynamics_det.txt">Deterministic Model</a> | <html><a href="https://static.igem.org/mediawiki/2009/2/23/Internal_dynamics_det.txt">Deterministic Model</a> | ||
| - | <br> | + | <br><br> |
| - | <a href="https://static.igem.org/mediawiki/2009/1/12/Internal_dynamics_stoch.txt"> | + | <a href="https://static.igem.org/mediawiki/2009/f/fe/MRNA_det.txt">GNUPlot file for deterministic mRNA parts</a> |
| + | <br><br> | ||
| + | <a href="https://static.igem.org/mediawiki/2009/6/6d/Lysis_det.txt">GNUPlot file for deterministic Lysis parts</a> | ||
| + | <br><br> | ||
| + | <a href="https://static.igem.org/mediawiki/2009/9/9a/QS_det.txt">GNUPlot file for deterministic Quorum Sensing parts</a> | ||
| + | <br><br> | ||
| + | <a href="https://static.igem.org/mediawiki/2009/1/12/Internal_dynamics_stoch.txt">Stochastic Model</a> | ||
| + | <br><br> | ||
| + | <a href="https://static.igem.org/mediawiki/2009/6/60/MRNA_stoch.txt">GNUPlot file for stochastic mRNA parts</a> | ||
| + | <br><br> | ||
| + | <a href="https://static.igem.org/mediawiki/2009/b/b0/Lysis_stoch.txt">GNUPlot file for stochastic Lysis parts</a> | ||
| + | <br><br> | ||
| + | <a href="https://static.igem.org/mediawiki/2009/e/e4/QS_stoch.txt">GNUPlot file for stochastic Quorum Sensing parts</a> | ||
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</html> | </html> | ||
| - | == | + | == Monte Carlo == |
| + | <html><a href="https://static.igem.org/mediawiki/2009/0/0f/Monte_Carlo_and_Graphing_%28stochastic%2C_C_program%29.txt">Stochastic Monte Carlo with Plotting</a></html> | ||
| + | <br><br> | ||
| + | <html><a href="https://static.igem.org/mediawiki/2009/7/71/Plot_all_mRNAs%28Gnuplot%2C_change_to_.plt%29.txt">GNUPlot file to plot mRNA concentrations over time</a><br><br> | ||
| + | <a href="https://static.igem.org/mediawiki/2009/e/e7/Plot_all_proteins_%28Gnuplot%2C_change_to_.plt%29.txt">GNUPlot file to plot protein concentrations over time</a><br><br> | ||
| + | <a href="https://static.igem.org/mediawiki/2009/4/42/Plot_only_the_important_proteins%28Gnuplot%2C_change_to_.plt%29.txt">GNUPlot file to plot important protein concentrations over time</a> | ||
| + | </html> | ||
| + | == Parameter Analysis == | ||
| + | <html><a href="https://static.igem.org/mediawiki/2009/2/25/2D_parameter_analysis_%28stochastic%2C_C%29.txt">Stochastic 2D parameter analysis</a><br><br> | ||
| + | <a href="https://static.igem.org/mediawiki/2009/2/29/Plot_for_2d_parameter_anlysis%28gunplot%2C_change_to_.plt%29.txt">GNUPlot file to plot 2D parameter analysis</a> | ||
| + | </html> | ||
| + | == Chemotaxis == | ||
| + | <html><a href="https://static.igem.org/mediawiki/2009/b/bd/C_chemotaxis.txt">Chemotaxis for a population of bacteria</a></html> | ||
| + | == Combined Model == | ||
| + | <html><a href="https://static.igem.org/mediawiki/2009/0/04/Combined_model.txt">Combined model of chemotaxis, lysis and glue deposition</a></html> | ||
| + | = Matlab Code = | ||
| + | == Chemotaxis == | ||
| + | <html><a href="https://static.igem.org/mediawiki/2009/1/18/AberdeenChemotaxis_2d.txt">Chemotaxis in 2D</a><br><br> | ||
| + | <a href="https://static.igem.org/mediawiki/2009/3/3e/AberdeenChemotaxis_3d.txt">Chemotaxis in 3D</a> | ||
| + | </html> | ||
| + | == Internal Dynamics == | ||
| + | <html><a href="https://2009.igem.org/Image:Aberdeen_GRN.zip">SimBiology Model</a> | ||
| + | </html> | ||
| + | == Quroum Sensing == | ||
| + | <html><a href="https://static.igem.org/mediawiki/2009/c/c1/Quorumcalcsphere.txt">Activation Point in a Spherical Microlitre of Bacteria</a> | ||
| + | </html> | ||
| + | = iGEM Game! = | ||
| + | We made a fun filled game, where you can play as the Pico Plumber itself. Download it | ||
| + | <html><a href="http://www.abdn.ac.uk/~u02sjc6/PicoPlumber.zip">here!!!</a></html> | ||
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| - | <a href="https://2009.igem.org/Team:Aberdeen_Scotland/parameters/ | + | <a href="https://2009.igem.org/Team:Aberdeen_Scotland/parameters/invest_6"><img src="https://static.igem.org/mediawiki/2009/e/ed/Aberdeen_Left_arrow.png"> Back to Quorum Sensing Activation</a> |
</td> | </td> | ||
<td align="right"> | <td align="right"> | ||
Latest revision as of 20:05, 21 October 2009
University of Aberdeen - Pico Plumber
iGEM 2009
Most of our programing was written in C, to plot our results we used GNUPlot
Contents |
C Programs
Internal Dynamics
Deterministic Model
GNUPlot file for deterministic mRNA parts
GNUPlot file for deterministic Lysis parts
GNUPlot file for deterministic Quorum Sensing parts
Stochastic Model
GNUPlot file for stochastic mRNA parts
GNUPlot file for stochastic Lysis parts
GNUPlot file for stochastic Quorum Sensing parts
Monte Carlo
Stochastic Monte Carlo with Plotting
GNUPlot file to plot mRNA concentrations over time
GNUPlot file to plot protein concentrations over time
GNUPlot file to plot important protein concentrations over time
Parameter Analysis
Stochastic 2D parameter analysis
GNUPlot file to plot 2D parameter analysis
Chemotaxis
Chemotaxis for a population of bacteria
Combined Model
Combined model of chemotaxis, lysis and glue deposition
Matlab Code
Chemotaxis
Chemotaxis in 2D
Chemotaxis in 3D
Internal Dynamics
Quroum Sensing
Activation Point in a Spherical Microlitre of Bacteria
iGEM Game!
We made a fun filled game, where you can play as the Pico Plumber itself. Download it here!!!
 Back to Quorum Sensing Activation
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Continue to Conclusions Page 
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