Most of our programing was written in C, to plot our results we used GNUPlot

C Programs

Internal Dynamics

Deterministic Model

GNUPlot file for deterministic mRNA parts

GNUPlot file for deterministic Lysis parts

GNUPlot file for deterministic Quorum Sensing parts

Stochastic Model

GNUPlot file for stochastic mRNA parts

GNUPlot file for stochastic Lysis parts

GNUPlot file for stochastic Quorum Sensing parts

Monte Carlo

Stochastic Monte Carlo with Plotting

GNUPlot file to plot mRNA concentrations over time

GNUPlot file to plot protein concentrations over time

GNUPlot file to plot important protein concentrations over time

Parameter Analysis

Stochastic 2D parameter analysis

GNUPlot file to plot 2D parameter analysis

Chemotaxis

Chemotaxis for a population of bacteria

Combined Model

Combined model of chemotaxis, lysis and glue deposition

Matlab Code

Chemotaxis

Chemotaxis in 2D

Chemotaxis in 3D

Internal Dynamics

SimBiology Model

Quroum Sensing

Activation Point in a Spherical Microlitre of Bacteria

iGEM Game!

We made a fun filled game, where you can play as the Pico Plumber itself. Download it here!!!

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