Team:Groningen/Modelling/Characterization

From 2009.igem.org

(Difference between revisions)
Line 193: Line 193:
   cSol.v5K5 = orgC.v5/orgC.K5;
   cSol.v5K5 = orgC.v5/orgC.K5;
   cSol.K5 = orgC.K5;
   cSol.K5 = orgC.K5;
 +
  cSol.k8K7= orgC.k8/orgC.K7;
 +
  cSol.K7 = orgC.K7;
   showOutputs('sol',computeCost(cSol,experiments),cSol);
   showOutputs('sol',computeCost(cSol,experiments),cSol);
Line 218: Line 220:
     var ENew = computeCost(cNew,experiments);
     var ENew = computeCost(cNew,experiments);
     for(var a in cNew) {
     for(var a in cNew) {
-
      var dca = (ENew-E)/(cNew[a]-c[a]);
+
 
 +
Bold text    var dca = (ENew-E)/(cNew[a]-c[a]);
       if (!(isNaN(dca) || !isFinite(dca))) dc[a] = (dc[a]+2*dca)/3;
       if (!(isNaN(dca) || !isFinite(dca))) dc[a] = (dc[a]+2*dca)/3;
     }
     }

Revision as of 12:05, 30 September 2009

[http://2009.igem.org/Team:Groningen http://2009.igem.org/wiki/images/f/f1/Igemhomelogo.png]


TODO: Talk about the devices we have and in what way we want to characterize them.

Uptake measurements

Sampling scheme
Time (min)
0 10 20 40 60
As(III)exT(0)
(µM)
0 x
10 x x x x x
20 x
50 x
100 x

To efficiently look at both time and concentration dependent processes we took samples as in the table on the right. Below we list all results, which have been used for fitting all necessary parameters.

TODO: List results. Take conversion from nmol/mg and mg/ml to µM and Vc/Vs into account.

best cur gradient solved
v5/K5
v5
K5
k8/K7
k8
K7
E