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Team:Imperial College London/Drylab/Autoinduction
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As we can see, S1 is used up before S2. During this phase, the population (X- blue trace) grows exponentially and saturates when S1 runs out. Once it runs out, there is a "lag phase" which corresponds to the time taken to produce the enzymes required to metabolize a secondary carbon source. Once these are produced, we enter a second exponential growth phase. | As we can see, S1 is used up before S2. During this phase, the population (X- blue trace) grows exponentially and saturates when S1 runs out. Once it runs out, there is a "lag phase" which corresponds to the time taken to produce the enzymes required to metabolize a secondary carbon source. Once these are produced, we enter a second exponential growth phase. | ||
| - | <html><a href="https://2009.igem.org/Team:Imperial_College_London/Drylab/Autoinduction/Model1"><img style="vertical-align:bottom;" width=90px align="left" src="http://i691.photobucket.com/albums/vv271/dk806/II09_Learnmore.png"></a></html> about Model 1 | + | <html><a href="https://2009.igem.org/Team:Imperial_College_London/Drylab/Autoinduction/Model1"><img style="vertical-align:bottom;" width=90px align="left" src="http://i691.photobucket.com/albums/vv271/dk806/II09_Learnmore.png"></a></html> about Model 1<br><br><br> |
===Model 2=== | ===Model 2=== | ||
Details coming up soon! Still running long simulations... | Details coming up soon! Still running long simulations... | ||
Revision as of 19:49, 8 October 2009
Autoinduction
Starting the encapsulation process is related to diauxic growth of bacteria under two carbon sources. This is explained further here. 2 models have been discussed in this section and more information about each can be found in the tabs.
Contents |
Goal of the models
- Provide understanding of the [http://en.wikipedia.org/wiki/Diauxie diauxic growth] phenomenon
- Find out the time taken to consume glucose in the medium to characterize the CRP promoter.
Model 1
- This is a cybernetic model developed by Kompala et al [1].
- It is based on Michaelis-Menten assumptions for substrate consumption.
- The substrates in this case are our carbon sources: glucose, maltose, xylose, galactose...
Rationale:
In a mixture of carbon sources, glucose is energetically more favorable to consume(more on this is discussed in the autoinduction section).
This model includes the effects of enzyme activation and inhibition, as well as competition for metabolism of sugars [1].
Figure from [http://demonstrations.wolfram.com/DiauxicGrowthOfBacteriaOnTwoSubstrates/ Wolfram].
The red and green lines represent the concentrations of glucose (S1) and a secondary substrate (S2).
As we can see, S1 is used up before S2. During this phase, the population (X- blue trace) grows exponentially and saturates when S1 runs out. Once it runs out, there is a "lag phase" which corresponds to the time taken to produce the enzymes required to metabolize a secondary carbon source. Once these are produced, we enter a second exponential growth phase.
about Model 1
Model 2
Details coming up soon! Still running long simulations...
References
[1]Kompala, D.S., D. Ramkrishna and G.T. Tsao, "Cybernetic modeling of microbial growth on multiple substrates," Biotechnology and Bioengineering 26 :1272-1281 (1984).
[2] Zhao Lu et al. "Dynamics of Glucose-Lactose Diauxic Growth in E.coli". arXiv:0708.1993v1 [q-bio.OT] 15 Aug 2007
