Team:Aberdeen Scotland/modeling/downloads

From 2009.igem.org

(Difference between revisions)
 
(19 intermediate revisions not shown)
Line 2: Line 2:
{{:Team:Aberdeen_Scotland/header2}}
{{:Team:Aberdeen_Scotland/header2}}
-
Most of our programing was written in C, to plot our results we used <html><a href="http://www.gnuplot.info/">GNUPlot</a>
+
Most of our programing was written in C, to plot our results we used <html><a href="http://www.gnuplot.info/">GNUPlot</a></html>
= C Programs =
= C Programs =
== Internal Dynamics ==
== Internal Dynamics ==
<html><a href="https://static.igem.org/mediawiki/2009/2/23/Internal_dynamics_det.txt">Deterministic Model</a>
<html><a href="https://static.igem.org/mediawiki/2009/2/23/Internal_dynamics_det.txt">Deterministic Model</a>
-
<br>
+
<br><br>
-
<a href="https://static.igem.org/mediawiki/2009/1/12/Internal_dynamics_stoch.txt">Stochastics Model</a>
+
<a href="https://static.igem.org/mediawiki/2009/f/fe/MRNA_det.txt">GNUPlot file for deterministic mRNA parts</a>
 +
<br><br>
 +
<a href="https://static.igem.org/mediawiki/2009/6/6d/Lysis_det.txt">GNUPlot file for deterministic Lysis parts</a>
 +
<br><br>
 +
<a href="https://static.igem.org/mediawiki/2009/9/9a/QS_det.txt">GNUPlot file for deterministic Quorum Sensing parts</a>
 +
<br><br>
 +
<a href="https://static.igem.org/mediawiki/2009/1/12/Internal_dynamics_stoch.txt">Stochastic Model</a>
 +
<br><br>
 +
<a href="https://static.igem.org/mediawiki/2009/6/60/MRNA_stoch.txt">GNUPlot file for stochastic mRNA parts</a>
 +
<br><br>
 +
<a href="https://static.igem.org/mediawiki/2009/b/b0/Lysis_stoch.txt">GNUPlot file for stochastic Lysis parts</a>
 +
<br><br>
 +
<a href="https://static.igem.org/mediawiki/2009/e/e4/QS_stoch.txt">GNUPlot file for stochastic Quorum Sensing parts</a>
 +
 
 +
 
</html>
</html>
 +
== Monte Carlo ==
== Monte Carlo ==
<html><a href="https://static.igem.org/mediawiki/2009/0/0f/Monte_Carlo_and_Graphing_%28stochastic%2C_C_program%29.txt">Stochastic Monte Carlo with Plotting</a></html>
<html><a href="https://static.igem.org/mediawiki/2009/0/0f/Monte_Carlo_and_Graphing_%28stochastic%2C_C_program%29.txt">Stochastic Monte Carlo with Plotting</a></html>
Line 21: Line 36:
<a href="https://static.igem.org/mediawiki/2009/2/29/Plot_for_2d_parameter_anlysis%28gunplot%2C_change_to_.plt%29.txt">GNUPlot file to plot 2D parameter analysis</a>
<a href="https://static.igem.org/mediawiki/2009/2/29/Plot_for_2d_parameter_anlysis%28gunplot%2C_change_to_.plt%29.txt">GNUPlot file to plot 2D parameter analysis</a>
</html>
</html>
 +
== Chemotaxis ==
 +
<html><a href="https://static.igem.org/mediawiki/2009/b/bd/C_chemotaxis.txt">Chemotaxis for a population of bacteria</a></html>
 +
== Combined Model ==
 +
<html><a href="https://static.igem.org/mediawiki/2009/0/04/Combined_model.txt">Combined model of chemotaxis, lysis and glue deposition</a></html>
-
== Matlab Code ==
+
= Matlab Code =
-
 
+
== Chemotaxis ==
 +
<html><a href="https://static.igem.org/mediawiki/2009/1/18/AberdeenChemotaxis_2d.txt">Chemotaxis in 2D</a><br><br>
 +
<a href="https://static.igem.org/mediawiki/2009/3/3e/AberdeenChemotaxis_3d.txt">Chemotaxis in 3D</a>
 +
</html>
 +
== Internal Dynamics ==
 +
<html><a href="https://2009.igem.org/Image:Aberdeen_GRN.zip">SimBiology Model</a>
 +
</html>
 +
== Quroum Sensing ==
 +
<html><a href="https://static.igem.org/mediawiki/2009/c/c1/Quorumcalcsphere.txt">Activation Point in a Spherical Microlitre of Bacteria</a>
 +
</html>
 +
= iGEM Game! =
 +
We made a fun filled game, where you can play as the Pico Plumber itself. Download it
 +
<html><a href="http://www.abdn.ac.uk/~u02sjc6/PicoPlumber.zip">here!!!</a></html>
Line 31: Line 62:
<tr>
<tr>
<td>
<td>
-
<a href="https://2009.igem.org/Team:Aberdeen_Scotland/parameters/invest_5"><img src="https://static.igem.org/mediawiki/2009/e/ed/Aberdeen_Left_arrow.png">&nbsp;&nbsp;Back to the Amended Model</a>
+
<a href="https://2009.igem.org/Team:Aberdeen_Scotland/parameters/invest_6"><img src="https://static.igem.org/mediawiki/2009/e/ed/Aberdeen_Left_arrow.png">&nbsp;&nbsp;Back to Quorum Sensing Activation</a>
</td>
</td>
<td align="right">
<td align="right">

Latest revision as of 20:05, 21 October 2009

University of Aberdeen iGEM 2009

Most of our programing was written in C, to plot our results we used GNUPlot

Contents

C Programs

Internal Dynamics

Deterministic Model

GNUPlot file for deterministic mRNA parts

GNUPlot file for deterministic Lysis parts

GNUPlot file for deterministic Quorum Sensing parts

Stochastic Model

GNUPlot file for stochastic mRNA parts

GNUPlot file for stochastic Lysis parts

GNUPlot file for stochastic Quorum Sensing parts

Monte Carlo

Stochastic Monte Carlo with Plotting

GNUPlot file to plot mRNA concentrations over time

GNUPlot file to plot protein concentrations over time

GNUPlot file to plot important protein concentrations over time

Parameter Analysis

Stochastic 2D parameter analysis

GNUPlot file to plot 2D parameter analysis

Chemotaxis

Chemotaxis for a population of bacteria

Combined Model

Combined model of chemotaxis, lysis and glue deposition

Matlab Code

Chemotaxis

Chemotaxis in 2D

Chemotaxis in 3D

Internal Dynamics

SimBiology Model

Quroum Sensing

Activation Point in a Spherical Microlitre of Bacteria

iGEM Game!

We made a fun filled game, where you can play as the Pico Plumber itself. Download it here!!!


  Back to Quorum Sensing Activation Continue to Conclusions Page  

 

Retrieved from "http://2009.igem.org/Team:Aberdeen_Scotland/modeling/downloads"