Team:Aberdeen Scotland/modeling/downloads

From 2009.igem.org

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Most of our programing was written in C, to plot our results we used <html><a href="http://www.gnuplot.info/">GNUPlot</a>
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Most of our programing was written in C, to plot our results we used <html><a href="http://www.gnuplot.info/">GNUPlot</a></html>
= C Programs =
= C Programs =
== Internal Dynamics ==
== Internal Dynamics ==
<html><a href="https://static.igem.org/mediawiki/2009/2/23/Internal_dynamics_det.txt">Deterministic Model</a>
<html><a href="https://static.igem.org/mediawiki/2009/2/23/Internal_dynamics_det.txt">Deterministic Model</a>
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<a href="https://static.igem.org/mediawiki/2009/1/12/Internal_dynamics_stoch.txt">Stochastics Model</a>
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<a href="https://static.igem.org/mediawiki/2009/f/fe/MRNA_det.txt">GNUPlot file for deterministic mRNA parts</a>
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<br><br>
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<a href="https://static.igem.org/mediawiki/2009/6/6d/Lysis_det.txt">GNUPlot file for deterministic Lysis parts</a>
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<br><br>
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<a href="https://static.igem.org/mediawiki/2009/9/9a/QS_det.txt">GNUPlot file for deterministic Quorum Sensing parts</a>
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<br><br>
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<a href="https://static.igem.org/mediawiki/2009/1/12/Internal_dynamics_stoch.txt">Stochastic Model</a>
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<br><br>
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<a href="https://static.igem.org/mediawiki/2009/6/60/MRNA_stoch.txt">GNUPlot file for stochastic mRNA parts</a>
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<a href="https://static.igem.org/mediawiki/2009/b/b0/Lysis_stoch.txt">GNUPlot file for stochastic Lysis parts</a>
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<br><br>
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<a href="https://static.igem.org/mediawiki/2009/e/e4/QS_stoch.txt">GNUPlot file for stochastic Quorum Sensing parts</a>
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</html>
</html>
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== Monte Carlo ==
== Monte Carlo ==
<html><a href="https://static.igem.org/mediawiki/2009/0/0f/Monte_Carlo_and_Graphing_%28stochastic%2C_C_program%29.txt">Stochastic Monte Carlo with Plotting</a></html>
<html><a href="https://static.igem.org/mediawiki/2009/0/0f/Monte_Carlo_and_Graphing_%28stochastic%2C_C_program%29.txt">Stochastic Monte Carlo with Plotting</a></html>
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<a href="https://static.igem.org/mediawiki/2009/2/29/Plot_for_2d_parameter_anlysis%28gunplot%2C_change_to_.plt%29.txt">GNUPlot file to plot 2D parameter analysis</a>
<a href="https://static.igem.org/mediawiki/2009/2/29/Plot_for_2d_parameter_anlysis%28gunplot%2C_change_to_.plt%29.txt">GNUPlot file to plot 2D parameter analysis</a>
</html>
</html>
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== Chemotaxis ==
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<html><a href="https://static.igem.org/mediawiki/2009/b/bd/C_chemotaxis.txt">Chemotaxis for a population of bacteria</a></html>
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== Combined Model ==
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<html><a href="https://static.igem.org/mediawiki/2009/0/04/Combined_model.txt">Combined model of chemotaxis, lysis and glue deposition</a></html>
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== Matlab Code ==
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= Matlab Code =
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== Chemotaxis ==
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<html><a href="https://static.igem.org/mediawiki/2009/1/18/AberdeenChemotaxis_2d.txt">Chemotaxis in 2D</a><br><br>
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<a href="https://static.igem.org/mediawiki/2009/3/3e/AberdeenChemotaxis_3d.txt">Chemotaxis in 3D</a>
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</html>
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== Internal Dynamics ==
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<html><a href="https://2009.igem.org/Image:Aberdeen_GRN.zip">SimBiology Model</a>
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</html>
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== Quroum Sensing ==
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<html><a href="https://static.igem.org/mediawiki/2009/c/c1/Quorumcalcsphere.txt">Activation Point in a Spherical Microlitre of Bacteria</a>
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</html>
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= iGEM Game! =
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We made a fun filled game, where you can play as the Pico Plumber itself. Download it
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<html><a href="http://www.abdn.ac.uk/~u02sjc6/PicoPlumber.zip">here!!!</a></html>
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<a href="https://2009.igem.org/Team:Aberdeen_Scotland/parameters/invest_5"><img src="https://static.igem.org/mediawiki/2009/e/ed/Aberdeen_Left_arrow.png">&nbsp;&nbsp;Back to the Amended Model</a>
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<a href="https://2009.igem.org/Team:Aberdeen_Scotland/parameters/invest_6"><img src="https://static.igem.org/mediawiki/2009/e/ed/Aberdeen_Left_arrow.png">&nbsp;&nbsp;Back to Quorum Sensing Activation</a>
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Latest revision as of 20:05, 21 October 2009

University of Aberdeen iGEM 2009