"
Team:Imperial College London/Wetlab/Protocols/Thermoinduction
From 2009.igem.org
(→Day 1 evening) |
(→Day 2) |
||
| Line 59: | Line 59: | ||
===Day 2=== | ===Day 2=== | ||
1) Calibrate the multi-well plate reader with the I13522 overnight cells<br> | 1) Calibrate the multi-well plate reader with the I13522 overnight cells<br> | ||
| + | <br> | ||
High gain= 50%<br> | High gain= 50%<br> | ||
Low gain = 6% (no need to change) <br> | Low gain = 6% (no need to change) <br> | ||
<br> | <br> | ||
2)The previously mentioned tubes are filled with 3ml of M9 + 0.5% glc<br> | 2)The previously mentioned tubes are filled with 3ml of M9 + 0.5% glc<br> | ||
| + | <br> | ||
3)The overnight culture is diluted 1 in 20 into the first set of the newly prepared 15ml tubes<br> | 3)The overnight culture is diluted 1 in 20 into the first set of the newly prepared 15ml tubes<br> | ||
| + | <br> | ||
4) The tubes with cells are grown in the following conditions: <br> | 4) The tubes with cells are grown in the following conditions: <br> | ||
| + | <br> | ||
The 28 degrees cells and shift cells : at 28 degrees, <br> | The 28 degrees cells and shift cells : at 28 degrees, <br> | ||
42 degrees cells : at 42 degrees<br> | 42 degrees cells : at 42 degrees<br> | ||
| + | <br> | ||
5)The water bath is switched on to 55 degrees<br> | 5)The water bath is switched on to 55 degrees<br> | ||
| - | 6) For the second set of tubes (without cells) | + | <br> |
| + | 6) For the second set of tubes (without cells)<br> | ||
| + | <br> | ||
| + | 28 degrees tubes are put in the 28 degrees incubator<br> | ||
| + | 42 degrees tubes in the 42 degrees incubator<br> | ||
| + | shift tubes (w/o cells) are placed in the 55 degrees water bath. <br> | ||
| + | <br> | ||
7) Subsequent OD and GFP readings are taken using the following settings: <br> | 7) Subsequent OD and GFP readings are taken using the following settings: <br> | ||
| + | <br> | ||
Layout for the protocols can be imported as HVD-GFP<br> | Layout for the protocols can be imported as HVD-GFP<br> | ||
Measure: IPTG_GFP_FL (low gain) <br> | Measure: IPTG_GFP_FL (low gain) <br> | ||
Script: HVD-GFPhigain (high gain) <br> | Script: HVD-GFPhigain (high gain) <br> | ||
| + | <br> | ||
8) We need to ensure that bacterial cultures are at mid-log growth phase. <br> | 8) We need to ensure that bacterial cultures are at mid-log growth phase. <br> | ||
| + | <br> | ||
9) When mid-log phase is reached, an OD and GFP reading is taken of the cells. The tubes with cells are then added to the second set of tubes, and a subsequent OD and GFP reading is taken (time=0) <br> | 9) When mid-log phase is reached, an OD and GFP reading is taken of the cells. The tubes with cells are then added to the second set of tubes, and a subsequent OD and GFP reading is taken (time=0) <br> | ||
| + | <br> | ||
10) The second set of tubes (now with cells) are now grown at the following conditions: <br> | 10) The second set of tubes (now with cells) are now grown at the following conditions: <br> | ||
| + | <br> | ||
28 degree tubes: at 28 degrees<br> | 28 degree tubes: at 28 degrees<br> | ||
Shift and 42 degree tubes: at 42 degrees<br> | Shift and 42 degree tubes: at 42 degrees<br> | ||
| + | <br> | ||
11) The cells are now sampled for their GFP and OD readings half hourly for around 5 hours until the GFP fluorescence plateaus off. <br> | 11) The cells are now sampled for their GFP and OD readings half hourly for around 5 hours until the GFP fluorescence plateaus off. <br> | ||
| + | <br> | ||
{{Imperial/09/TemplateBottom}} | {{Imperial/09/TemplateBottom}} | ||
Latest revision as of 18:16, 15 October 2009
Contents |
Thermoinduction Assay
Aims
- To investigate the behaviour of the Harvard construct and show that when temperature is low (at 28 degrees), there is low fluorescence, while fluorescence increases when temperature is raised to 42 degrees.
Assay
Cells will be grown at 28 degrees. After equilibrating, they will be shifted to 42 degrees, and the change in fluorescence will be observed.
Equipment
- Heated water bath
- 42 degrees incubator
- Multi-well plate reader
- 96 well plates
- 15ml falcon tubes
- 50ml falcon tubes
Materials
- M9 media with 0.2% Casamino acid supplemented with 1mM CaCl2 and 1mM MgSO4
Cells
- Test construct CRP-GFP-Lac-RFP
- Negative I13504 RBS-GFP-TT
- Positive I13522 Ptet-RBS-GFP-TT
Protocol
Day 1 evening
1) Using a loop, pick out a single colony of the relevant cells from plates (in cold room)/
Or inoculate with starter culture 1 in 50.
Innoculate the cells on M9 + 0.5% Glucose and grow them overnight at 37 °C
2)Label the 15ml falcon tubes as following:
Tube 1: 28 degrees blank
Tube 2: 28 degrees Harvard-GFP construct
Tube 3: 28 degrees negative
Tube 4: 28 degrees positive
Tube 5: shift from 28 to 42 degrees blank
Tube 6: shift from 28 to 42 degrees Harvard-GFP construct
Tube 7: shift from 28 to 42 degrees negative
Tube 8: shift from 28 to 42 degrees positive
Tube 9: 42 degrees blank
Tube 10: 42 degrees Harvard-GFP construct
Tube 11: 42 degrees negative
Tube 12: 42 degrees positive
Label another set of tubes similarly.
3) Prepare 80ml of M9 media + 0.5% glucose from stock glucose solution
For 30% glucose stock, dilution factor = 30/0.5= 60x
Therefore, vol of glucose solution = (vol of M9 media)/60
Day 2
1) Calibrate the multi-well plate reader with the I13522 overnight cells
High gain= 50%
Low gain = 6% (no need to change)
2)The previously mentioned tubes are filled with 3ml of M9 + 0.5% glc
3)The overnight culture is diluted 1 in 20 into the first set of the newly prepared 15ml tubes
4) The tubes with cells are grown in the following conditions:
The 28 degrees cells and shift cells : at 28 degrees,
42 degrees cells : at 42 degrees
5)The water bath is switched on to 55 degrees
6) For the second set of tubes (without cells)
28 degrees tubes are put in the 28 degrees incubator
42 degrees tubes in the 42 degrees incubator
shift tubes (w/o cells) are placed in the 55 degrees water bath.
7) Subsequent OD and GFP readings are taken using the following settings:
Layout for the protocols can be imported as HVD-GFP
Measure: IPTG_GFP_FL (low gain)
Script: HVD-GFPhigain (high gain)
8) We need to ensure that bacterial cultures are at mid-log growth phase.
9) When mid-log phase is reached, an OD and GFP reading is taken of the cells. The tubes with cells are then added to the second set of tubes, and a subsequent OD and GFP reading is taken (time=0)
10) The second set of tubes (now with cells) are now grown at the following conditions:
28 degree tubes: at 28 degrees
Shift and 42 degree tubes: at 42 degrees
11) The cells are now sampled for their GFP and OD readings half hourly for around 5 hours until the GFP fluorescence plateaus off.
