Revision as of 09:20, 20 October 2009

BCCS-Bristol
iGEM 2009


The BSim Framework	Outer Membrane Vesicles
Find out more about the BSim Platform.	Find out how we used BSim to simulate OMV based communication for our project.

Modelling

This year, in order to motivate the work in the wetlab, we have improved last year's award winning BSim software package. BSim is a free, open source, software package for stochastic simulation of interacting bacterial populations. The package has been improved this year to include more biological features as well as a clearer more user-friendly implementation. See the link above for details of the BSim package itself and more information about its features.

Many new features have been added and the process of creating simulation files has been made much more versatile and adaptable allowing for a wide range of biological situations to be simulated. See here for a brief introduction to the creation of BSim simulations.

Links

Repressilators coupled by quorum sensing
Modelling ideas
To do list
[http://code.google.com/p/bsim-bccs/ Google Code subversion repository].

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 =Modelling=
-This year, in order to motivate the work in the wetlab, we have improved last year's [https://2008.igem.org/Team:BCCS-Bristol/Modeling-Agent_Based award winning BSim software package]. BSim is a free, open source, software package for stochastic simulation of interacting bacterial populations. The package has been improved this year to include more biological features as well as a clearer more user-friendly implementation. See below for details of the BSim package and see [[Team:BCCS-Bristol/Modeling/BSim_Features|this page for more details of its feature set]].
+This year, in order to motivate the work in the wetlab, we have improved last year's [https://2008.igem.org/Team:BCCS-Bristol/Modeling-Agent_Based award winning BSim software package]. BSim is a free, open source, software package for stochastic simulation of interacting bacterial populations. The package has been improved this year to include more biological features as well as a clearer more user-friendly implementation. See the link above for details of the BSim package itself and more information about its features.
 Many new features have been added and the process of creating simulation files has been made much more versatile and adaptable allowing for a wide range of biological situations to be simulated. [[Team:BCCS-Bristol/Modeling/HowBSimWorks|See here for a brief introduction to the creation of BSim simulations.]]