Team:UNIPV-Pavia/Methods Materials/Electrophoresis

From 2009.igem.org

(Difference between revisions)
(→Electrophoresis)
(→Electrophoresis)
Line 56: Line 56:
'''TBE (Tris/Borate/EDTA buffer) 5x (final volume 1 liter)'''
'''TBE (Tris/Borate/EDTA buffer) 5x (final volume 1 liter)'''
<br>*'''54 gr Tris'''
<br>*'''54 gr Tris'''
-
<br>*'''27.5 gr Borate'''<hr color='white' width='70%'>
+
*'''27.5 gr Borate'''<hr color='white' width='70%'>
'''20 ml EDTA 0.5 M (pH 8)'''<hr color='white' width='70%'>
'''20 ml EDTA 0.5 M (pH 8)'''<hr color='white' width='70%'>
'''Marker (1 kb DNA Ladder, Promega)'''<hr color='white' width='70%'>
'''Marker (1 kb DNA Ladder, Promega)'''<hr color='white' width='70%'>

Revision as of 16:33, 22 September 2009

EthanolPVanimation.gif



Protocols


Electrophoresis

(estimated time: 2 hours)

  • Prepare agarose gel in 1x TBE buffer
  • Add ethidium bromide (using gloves and face mask for your safety):
    • 1 µl in the small size agarose gel (70 ml)
    • 2 µl in the middle size agarose gel (150 ml)
    • 4 µl in the big size agarose gel (250 ml)
  • Cast the gel, insert the well-forming comb and let it polymerize
  • Add the loading buffer to each sample
  • Load the samples and 8 µl of marker
  • Set to 70-100 volts and electrophorese for the required amount of time
  • Use UV-light to look at the bands
  • Take a picture of the gel, if needed (not when bands have to be cut!!!)










DNA samples
Ethidium bromide
Loading buffer 10x Blue Juice, Invitrogen

TBE (Tris/Borate/EDTA buffer) 5x (final volume 1 liter)
*54 gr Tris

  • 27.5 gr Borate
20 ml EDTA 0.5 M (pH 8)
Marker (1 kb DNA Ladder, Promega)
Face mask and gloves
Electrophoresis apparatus

Transilluminator





  • NOTE: when not specified, the marker has the following pattern:
Pv ladder.jpg
Retrieved from "http://2009.igem.org/Team:UNIPV-Pavia/Methods_Materials/Electrophoresis"