Team:UC Davis/Project
From 2009.igem.org
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- | href="https://2009.igem.org/Team:UC_Davis/Contacts_References"><img alt="" | + | href="https://2009.igem.org/Team:UC_Davis/Contacts_References"><img |
- | src="https://static.igem.org/mediawiki/2009/1/1d/UCDAVIS_PIC7.png" | + | alt="" src="https://static.igem.org/mediawiki/2009/1/1d/UCDAVIS_PIC7.png" |
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- | <div style="text-align: left;"><b style="color: rgb(0, 0, 0);"><big><big>Project:</big></big><br> | + | <div style="text-align: left;"><b style="color: rgb(0, 0, 0);"><big |
+ | style="text-decoration: underline;"><big>Project:</big></big><br> | ||
</b> | </b> | ||
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<small><u><span | <small><u><span | ||
style="font-size: 20pt; font-family: "Times New Roman","serif";"><span | style="font-size: 20pt; font-family: "Times New Roman","serif";"><span | ||
- | style="font-weight: bold;"><a name="celiac_disease"></a> | + | style="font-weight: bold;"><a name="celiac_disease"></a></span></span></u></small><span |
- | </span></u></small>< | + | style=""><big style="font-style: italic;"><span |
- | style="font- | + | style="font-weight: bold;">What is Celiac Disease?</span></big><o:p></o:p></span> |
- | + | <p> Celiac Disease is autoimmune | |
- | style="font- | + | disorder that occurs inside the small |
- | is Celiac Disease?</span></ | + | |
- | < | + | |
- | + | ||
- | + | ||
- | Celiac | + | |
- | Disease is | + | |
intestine. When the body cannot digest gliadin (component of gluten) | intestine. When the body cannot digest gliadin (component of gluten) | ||
properly, | properly, | ||
- | this leads to an immune response (14). Furthermore, different people | + | this leads to an immune response in the surface of the small intestine |
- | have | + | (14). |
- | different reactions to | + | Furthermore, different people have different reactions to this immune |
- | (14). It | + | response |
- | has been estimated that about one out of 133 Americans are currently | + | such as bloating, diarrhea, and weight loss (14). It has been estimated |
- | suffering | + | that |
- | from this disease (11); including one of our teammate's friends, and | + | about one out of 133 Americans are currently suffering from this |
- | that was | + | disease (11); |
- | what sparked our interest in designing this project.< | + | including one of our teammate's friends, and that was what sparked our |
- | + | interest | |
- | < | + | in designing this project. <o:p></o:p></p> |
- | style="font- | + | <h2><small><a style="font-style: italic;" |
- | + | name="123e28be1357843b_What_happens_in_the_nor"></a></small><span | |
- | style="font-style: italic;"> | + | style=""><small><span style="font-style: italic;">What happens in the |
- | + | normal small | |
- | + | intestine?</span></small><o:p></o:p></span></h2> | |
- | What happens in the normal small | + | <p> In the normal small intestine, |
- | intestine?</span></ | + | the brush border membrane on the surface |
- | + | digests starches and other sugars, proteins, and fat droplets and lets | |
- | + | their | |
- | + | breakdown products pass into the bloodstream. <o:p></o:p></p> | |
- | the normal small intestine, | + | <h2><a name="123e28be1357843b_What_happens_in_Celiac_"></a><span |
- | + | style=""><small style="font-style: italic;">What happens in Celiac | |
- | + | disease small | |
- | membrane | + | intestine?</small><o:p></o:p></span></h2> |
- | + | <p> The brush border membrane in | |
- | + | the small intestine of people suffering from | |
- | + | Celiac Disease allows large molecules such as gliadin to go straight | |
- | + | into the | |
- | + | blood stream without directing them through the transcellular route. | |
- | + | Once | |
- | + | gliadin passes through, Antigen Presenting Cells (APCs) recognize | |
- | + | gliadin as a | |
- | style=" | + | foreign object and will attack. This immune response results in |
- | style=""> | + | inflammation of |
- | </ | + | the surface of the intestine with loss of the normal cells required for |
- | + | absorption of sugars, protein, and fat from the diet. <o:p></o:p></p> | |
- | + | <p>The immune response not only causes abdominal pain, bloating, | |
- | + | diarrhea and | |
- | Celiac Disease | + | weight loss it may also damage intestinal villi, which are important |
- | allows large molecules such as gliadin to go straight into the | + | for |
- | stream | + | absorbing nutrients. The destruction of villi eventually leads to a |
- | without directing them through the transcellular route. Once | + | lack of |
- | passes | + | absorption of different nutrients, which can lead to malnutrition (14). |
- | through, Antigen Presenting Cells (APCs) recognize gliadin as a foreign | + | Some |
- | object | + | people affected with this disorder can also suffer from autoimmune |
- | and will attack. This immune response | + | thyroid |
- | + | disease, autoimmune liver disease, and rheumatoid arthritis (<i>diseases | |
- | <p | + | in |
- | + | which body immune system attacks healthy cells/tissues</i>) (14). <o:p></o:p></p> | |
- | immune response not only causes abdominal bloating, | + | |
- | and | + | |
- | + | ||
- | are | + | |
- | + | ||
- | leads to | + | |
- | a lack of absorption of different nutrients, which can lead to | + | |
- | + | ||
- | (14). Some people affected with this disorder can also suffer from | + | |
- | + | ||
- | thyroid disease, autoimmune liver disease, rheumatoid arthritis | + | |
- | + | ||
- | in which body immune system attacks healthy cells/tissues | + | |
- | + | ||
- | (14).< | + | |
- | + | ||
- | </ | + | |
<hr style="width: 100%; height: 2px;"> | <hr style="width: 100%; height: 2px;"> | ||
- | <p | + | <p><u><span |
style="font-size: 12pt; font-family: "Times New Roman","serif";"><big><big><span | style="font-size: 12pt; font-family: "Times New Roman","serif";"><big><big><span | ||
style="font-weight: bold;"><a name="current_treatment"></a>Current | style="font-weight: bold;"><a name="current_treatment"></a>Current | ||
- | treatments:</span></big></big><o:p></o:p></span></u>< | + | treatments:</span></big></big><o:p></o:p></span></u><br> |
- | + | <b><span | |
- | style="font-size: 12pt; font-family: "Times New Roman","serif";"> | + | style="font-size: 12pt; font-family: "Times New Roman","serif";"></span></b><span |
- | </span></b><span | + | style="font-size: 12pt; font-family: "Times New Roman","serif";"></span><br> |
- | style="font-size: 12pt; font-family: "Times New Roman","serif";">Currently, | + | Currently, no cure has been found |
- | no cure has been found | + | for this illness. The only way to avoid |
- | for this illness. The only way to avoid some of celiac disease’s | + | some of celiac disease’s symptoms is by adopting a gluten free diet |
- | symptoms is by | + | (14, 12, |
- | adopting a gluten free diet (14, 12, and 11). However, you are more | + | and 11). However, you are more likely to find gluten in your everyday |
- | likely to | + | diet, and |
- | find gluten in your everyday diet | + | people with celiac disease must purchase gluten-free substances from |
- | + | specialized grocery stores. "Oral supplementation with prolyl | |
- | + | oligopeptidases that can digest and detoxify gluten has therefore been | |
- | + | ||
- | + | ||
- | + | ||
- | "Oral supplementation with prolyl oligopeptidases has therefore been | + | |
proposed | proposed | ||
as a potential therapeutic approach."(8). However, enzymes studied | as a potential therapeutic approach."(8). However, enzymes studied | ||
earlier | earlier | ||
- | were not able to degrade gluten | + | were not able to degrade gluten inside stomach (before it reaches small |
- | intestine because they were "irreversibly inactivated by pepsin and | + | intestine) because they were "irreversibly inactivated by pepsin and |
- | acidic | + | acidic pH, both present in the stomach."(8) <o:p></o:p></p> |
- | pH, both present in the stomach."(8)<o:p></o:p></ | + | <p> Nevertheless, over the past |
- | + | years, researchers have discovered an enzyme | |
- | | + | from <i>Aspergillus niger</i>, a newly identified prolyl endoprotease, |
- | Nevertheless, over the past years, researchers have discovered an | + | that was |
- | enzyme from <i>Aspergillus | + | observed to "work optimally at 4-5pH and remains stable at 2pH"(8) |
- | niger</i>, a newly identified prolyl endoprotease, that was observed to | + | and maybe this enzyme will lead us to an alternative treatment for this |
- | "work optimally at 4-5pH and remains stable at 2pH"(8) and maybe this | + | disorder (8). Studies have shown that prolyl-endoprotease from <i>Aspergillus |
- | enzyme will lead us to an alternative treatment for this disorder (8). | + | niger</i> is able to "degrade gluten in vitro and under conditions |
- | Studies | + | similar |
- | have shown that prolyl-endoprotease from <i>Aspergillus niger</i> is | + | to the ones present in the gastrointestinal tract." (8) ; but due |
- | able to | + | to |
- | "degrade gluten in vitro and under conditions similar to the ones | + | licensing restrictions we have opted not to work with this protein. <o:p></o:p></p> |
- | present | + | <p> Recently (year 2007), a study |
- | in the gastrointestinal tract." (8) ; but due to licensing restrictions | + | has suggested an alternative approach by |
- | we | + | |
- | have opted not to work with this protein. | + | |
- | + | ||
- | < | + | |
- | Recently (year 2007), a study has suggested an alternative approach by | + | |
combining a glutamine-specific endoprotease (EP-B2 from barley) and a | combining a glutamine-specific endoprotease (EP-B2 from barley) and a | ||
prolyl | prolyl | ||
Line 199: | Line 168: | ||
can therefore be administered as lyophilized powders or simple capsules | can therefore be administered as lyophilized powders or simple capsules | ||
or | or | ||
- | tablets” (12).</ | + | tablets” (12). <o:p></o:p></p> |
- | + | <p><i>Note: Moreover, this study was first “evaluated via in vitro | |
+ | digestion of | ||
+ | whole-wheat bread and then confirmed by in vivo studies in rats (12), | ||
+ | unlike | ||
+ | other earlier studies which were performed on synthetic gluten | ||
+ | oligopeptides, | ||
+ | recombinant gliadin proteins, or uncooked gluten” (12).</i> <o:p></o:p></p> | ||
<p class="MsoNormal" style="line-height: normal;"><i><span | <p class="MsoNormal" style="line-height: normal;"><i><span | ||
- | style="font-size: 12pt; font-family: "Times New Roman","serif";"> | + | style="font-size: 12pt; font-family: "Times New Roman","serif";"></span></i><span |
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
style="font-size: 12pt; font-family: "Times New Roman","serif";"><o:p></o:p></span></p> | style="font-size: 12pt; font-family: "Times New Roman","serif";"><o:p></o:p></span></p> | ||
<hr style="width: 100%; height: 2px;"><b><u><span | <hr style="width: 100%; height: 2px;"><b><u><span | ||
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name="our_approach"></a>Our | name="our_approach"></a>Our | ||
approach:<o:p></o:p></span></u></b> | approach:<o:p></o:p></span></u></b> | ||
- | <p | + | <p> Gliadin induces an immune |
- | + | system response when it is absorbed into | |
- | + | the blood stream through the small intestine. We plan to take advantage | |
- | + | of this by breaking down gliadin in the stomach before it reaches the | |
- | + | small intestine. We have developed a secretion system to release an | |
- | the | + | enzyme that can break down gliadin. Also, in order to prevent our |
- | small intestine | + | delivery system from taking residence anywhere outside of the stomach, |
- | + | we plan to incorporate the difference in pH between the stomach and | |
- | + | small intestine with a pH-inducible apoptosis system. By adopting these | |
- | + | two systems, we will create a pH-moderated secretion system.<br> | |
- | + | Unlike other suggested treatments | |
- | + | requiring the consumption of capsules or tablets, our method of using <i>E. | |
- | + | coli</i> as our delivery system is more cost- and time-efficient. | |
- | + | </p> | |
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | our | + | |
- | + | ||
- | + | ||
- | and | + | |
- | + | ||
- | + | ||
<hr style="width: 100%; height: 2px;"> | <hr style="width: 100%; height: 2px;"> | ||
<p class="MsoNormal"><span style="font-weight: bold;">Our project is | <p class="MsoNormal"><span style="font-weight: bold;">Our project is |
Revision as of 04:34, 26 September 2009
What is Celiac Disease?
Celiac Disease is autoimmune
disorder that occurs inside the small
intestine. When the body cannot digest gliadin (component of gluten)
properly,
this leads to an immune response in the surface of the small intestine
(14).
Furthermore, different people have different reactions to this immune
response
such as bloating, diarrhea, and weight loss (14). It has been estimated
that
about one out of 133 Americans are currently suffering from this
disease (11);
including one of our teammate's friends, and that was what sparked our
interest
in designing this project.
What happens in the
normal small
intestine?
In the normal small intestine,
the brush border membrane on the surface
digests starches and other sugars, proteins, and fat droplets and lets
their
breakdown products pass into the bloodstream.
What happens in Celiac
disease small
intestine?
The brush border membrane in
the small intestine of people suffering from
Celiac Disease allows large molecules such as gliadin to go straight
into the
blood stream without directing them through the transcellular route.
Once
gliadin passes through, Antigen Presenting Cells (APCs) recognize
gliadin as a
foreign object and will attack. This immune response results in
inflammation of
the surface of the intestine with loss of the normal cells required for
absorption of sugars, protein, and fat from the diet.
The immune response not only causes abdominal pain, bloating,
diarrhea and
weight loss it may also damage intestinal villi, which are important
for
absorbing nutrients. The destruction of villi eventually leads to a
lack of
absorption of different nutrients, which can lead to malnutrition (14).
Some
people affected with this disorder can also suffer from autoimmune
thyroid
disease, autoimmune liver disease, and rheumatoid arthritis (diseases
in
which body immune system attacks healthy cells/tissues) (14).
Current
treatments:
Currently, no cure has been found
for this illness. The only way to avoid
some of celiac disease’s symptoms is by adopting a gluten free diet
(14, 12,
and 11). However, you are more likely to find gluten in your everyday
diet, and
people with celiac disease must purchase gluten-free substances from
specialized grocery stores. "Oral supplementation with prolyl
oligopeptidases that can digest and detoxify gluten has therefore been
proposed
as a potential therapeutic approach."(8). However, enzymes studied
earlier
were not able to degrade gluten inside stomach (before it reaches small
intestine) because they were "irreversibly inactivated by pepsin and
acidic pH, both present in the stomach."(8)
Nevertheless, over the past
years, researchers have discovered an enzyme
from Aspergillus niger, a newly identified prolyl endoprotease,
that was
observed to "work optimally at 4-5pH and remains stable at 2pH"(8)
and maybe this enzyme will lead us to an alternative treatment for this
disorder (8). Studies have shown that prolyl-endoprotease from Aspergillus
niger is able to "degrade gluten in vitro and under conditions
similar
to the ones present in the gastrointestinal tract." (8) ; but due
to
licensing restrictions we have opted not to work with this protein.
Recently (year 2007), a study
has suggested an alternative approach by
combining a glutamine-specific endoprotease (EP-B2 from barley) and a
prolyl
endopeptidase (SC PEP from Sphingomonas capsulata); with gastric
activity and
complementary substrate specificity there is a possibility of
increasing the
safe threshold of ingested gluten (12). One of the advantages of this
“combination product is that both enzymes are active and stable in
stomach and
can therefore be administered as lyophilized powders or simple capsules
or
tablets” (12).
Note: Moreover, this study was first “evaluated via in vitro
digestion of
whole-wheat bread and then confirmed by in vivo studies in rats (12),
unlike
other earlier studies which were performed on synthetic gluten
oligopeptides,
recombinant gliadin proteins, or uncooked gluten” (12).
Our approach:
Gliadin induces an immune
system response when it is absorbed into
the blood stream through the small intestine. We plan to take advantage
of this by breaking down gliadin in the stomach before it reaches the
small intestine. We have developed a secretion system to release an
enzyme that can break down gliadin. Also, in order to prevent our
delivery system from taking residence anywhere outside of the stomach,
we plan to incorporate the difference in pH between the stomach and
small intestine with a pH-inducible apoptosis system. By adopting these
two systems, we will create a pH-moderated secretion system.
Unlike other suggested treatments
requiring the consumption of capsules or tablets, our method of using E.
coli as our delivery system is more cost- and time-efficient.
Our project is
split into two parts:
1.Induced Secretion
- Gene sequence for secretion system
- Adding secretion
- Assay for measuring protein localization and activity
- Finding an appropriate biological pH sensor
- Wiring the pH sensor into our system
- Assay for measuring the behavior of the pH sensor