Revision as of 22:49, 20 October 2009

Vanillin Production: Planning

Goal

Making vanillin from tyrosine in a five-step pathway, implement a key lock function and add the LVA tag on the Sam8 and ComT enzymes.

Making vanillin from tyrosine

Required

Biobricks:

SAM8: : coding sequence without RBS
SAM5: : RBS site + PstI restriction site removed
COMT: : coding sequence without RBS
- LVA tag (AANDENYALAA) attached to COMT (nucleotide code: gctgcaaacgacgaaaactacgctttagtagct)
FCS: : RBS + fcs in pSB1A2
ECH: : RBS + ech in pSB1A2

Where from

SAM8, SAM5, COMT, FCS, ECH will be sent to us from the French Lab from the university Edinburgh

Steps

Test the transformation of tyrosine to ferulic acid. The enzymes are put under a constitutive promoter and transcribed. Ferulic acid concentrations are then measured with HPLC
Test the transformation of ferulic acid to vanillin. The enzymes are put under a constitutive promoter and transcribed. Ferulic acid concentrations are then measured with HPLC
add LVA tag to ComT (and Sam8)
If both constructs are tested and are working, they can be combined into one plasmid and again tested.
Then, the locks need to be added.

The experimental setup for transformation by both biobrick constructs Electrocompetent Top10 cells were electroporated with and , additionally for blanc measurement cultures with and were electroporated. These cells were plated out on agar plates with the correct AntiBiotic and grown overnight (37°C). From these, a 5ml liquid culture supplied with AB was prepared and also grown overnight at 37°C. Subsequently 1:100th was transfered to a new liquid culture containing AB and tyrosine (5mg/L or 50 mg/L) for the first 3 enzymes(Sam8, Sam5 and ComT, ), Ferulic acid (5mg/L or 50mg/L) for the second 2 enzymes (ech and fcs, ) And vanillin (5mg/L or 50 mg/L) to determine the degradation or transformation of vanillin by E.Coli. After certain time intervals ranging between 30 minutes and many hours samples (1-5ml) were taken and centrifuged at 13000RPM for 1 minute. The supernatant was then transfered to a new tube and placed in -20°C until it was ready for analysis. Analysis was done on HPLC (High pressure liquid chromatography) using a standard LB culture for blanco and the measurements from the experiments.

@@ Line 30: / Line 30: @@
 '''The experimental setup for transformation by both biobrick constructs'''
-Electrocompetent Top10 cells were electroporated with {{kulpart|K238022}} and {{kulpart|K238018}}, additionally for blanc measurement cultures with {{kulpart|K238021}} and {{kulpart|K238017}} were electroporated. These cells were plated out on agar plates with the correct AntiBiotic and grown overnight (37°C). From these, a 5ml liquid culture supplied with AB was prepared and also grown overnight at 37°C. Subsequently 1:100th was transfered to a new liquid culture containing AB and tyrosine (5mg/L or 50 mg/L) for the first 3 enzymes(Sam8, Sam5 and ComT, {{kulpart"K238022}}), Ferulic acid (5mg/L or 50mg/L) for the second 2 enzymes (ech and fcs, {{kulpart|K238018}}) And vanillin (5mg/L or 50 mg/L) to determine the degradation or transformation of vanillin by E.Coli. After certain time intervals ranging between 30 minutes and many hours samples (1-5ml) were taken and centrifuged at 13000RPM for 1 minute. The supernatant was then transfered to a new tube and placed in -20°C until it was ready for analysis. Analysis was done on HPLC (High pressure liquid chromatography) using a standard LB culture for blanco and the measurements from the experiments.
+Electrocompetent Top10 cells were electroporated with {{kulpart|K238022}} and {{kulpart|K238018}}, additionally for blanc measurement cultures with {{kulpart|K238021}} and {{kulpart|K238017}} were electroporated. These cells were plated out on agar plates with the correct AntiBiotic and grown overnight (37°C). From these, a 5ml liquid culture supplied with AB was prepared and also grown overnight at 37°C. Subsequently 1:100th was transfered to a new liquid culture containing AB and tyrosine (5mg/L or 50 mg/L) for the first 3 enzymes(Sam8, Sam5 and ComT, {{kulpart|K238022}}), Ferulic acid (5mg/L or 50mg/L) for the second 2 enzymes (ech and fcs, {{kulpart|K238018}}) And vanillin (5mg/L or 50 mg/L) to determine the degradation or transformation of vanillin by E.Coli. After certain time intervals ranging between 30 minutes and many hours samples (1-5ml) were taken and centrifuged at 13000RPM for 1 minute. The supernatant was then transfered to a new tube and placed in -20°C until it was ready for analysis. Analysis was done on HPLC (High pressure liquid chromatography) using a standard LB culture for blanco and the measurements from the experiments.
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Team:KULeuven/Wetlab/Vanillin Production

From 2009.igem.org