Team:Virginia Commonwealth/Literature

From 2009.igem.org

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==Compilation==
 
Below is a compilation of papers and articles relevant to iGEM, synthetic biology and metabolic pathway engineering.
Below is a compilation of papers and articles relevant to iGEM, synthetic biology and metabolic pathway engineering.
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===Introductions===
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==Introductions==
*[http://www.nature.com/nature/comics/syntheticbiologycomic/index.html <font color="#000000">Adventures in synthetic biology</font>] a comic by [[User:Endy| <font color="#000000">Drew Endy</font>]]
*[http://www.nature.com/nature/comics/syntheticbiologycomic/index.html <font color="#000000">Adventures in synthetic biology</font>] a comic by [[User:Endy| <font color="#000000">Drew Endy</font>]]
*[http://www.etcgroup.org/en/materials/publications.html?id=602 <font color="#000000">Extreme genetic engineering: an introduction to synthetic biology</font>]
*[http://www.etcgroup.org/en/materials/publications.html?id=602 <font color="#000000">Extreme genetic engineering: an introduction to synthetic biology</font>]
*[http://www.synbiosafe.eu/uploads///pdf/SciAm_BioFab_2006_06.pdf <font color="#000000">Engineering life: building a FAB for biology</font>]
*[http://www.synbiosafe.eu/uploads///pdf/SciAm_BioFab_2006_06.pdf <font color="#000000">Engineering life: building a FAB for biology</font>]
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===Foundations===
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==Foundations==
*[http://www.nature.com/nature/journal/v403/n6767/abs/403335a0.html <font color="#000000">A synthetic oscillatory network of transcriptional regulators</font>] by Michael B. Elowitz and Stanislas Leibler
*[http://www.nature.com/nature/journal/v403/n6767/abs/403335a0.html <font color="#000000">A synthetic oscillatory network of transcriptional regulators</font>] by Michael B. Elowitz and Stanislas Leibler
*[http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html <font color="#000000">Construction of a genetic toggle switch in ''Escherichia coli''</font>] by James J. Collins ''et al''
*[http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html <font color="#000000">Construction of a genetic toggle switch in ''Escherichia coli''</font>] by James J. Collins ''et al''
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*[http://www.nature.com/nature/journal/v438/n7067/abs/nature04342.html;jsessionid=3E7E09FF4E647671DF79F2A37BC3632F <font color="#000000">Foundations for engineering biology</font>] by Drew Endy
*[http://www.nature.com/nature/journal/v438/n7067/abs/nature04342.html;jsessionid=3E7E09FF4E647671DF79F2A37BC3632F <font color="#000000">Foundations for engineering biology</font>] by Drew Endy
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===Perspectives===
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==Perspectives==
*[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17251159&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum <font color="#000000">Biology by Design</font>] by You ''et al''
*[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17251159&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum <font color="#000000">Biology by Design</font>] by You ''et al''
*[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KWTFBB-3&_user=709071&_coverDate=10%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=55327bdfbda5081b078808963c8a92b6 <font color="#000000">Genetic parts to program bacteria</font>] by Chris Voigt
*[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KWTFBB-3&_user=709071&_coverDate=10%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=55327bdfbda5081b078808963c8a92b6 <font color="#000000">Genetic parts to program bacteria</font>] by Chris Voigt
*[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KPX8RY-1&_user=709071&_coverDate=10%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=7a316893fbee50cab2742cc3b6de73b4 <font color="#000000">Systems biology as a foundation for genome-scale synthetic biology</font>] by B. Palsson ''et al''
*[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KPX8RY-1&_user=709071&_coverDate=10%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=7a316893fbee50cab2742cc3b6de73b4 <font color="#000000">Systems biology as a foundation for genome-scale synthetic biology</font>] by B. Palsson ''et al''
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===Applications===
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==Applications==
====Artemisinin project====
====Artemisinin project====
*[http://www.nature.com/nchembio/journal/v2/n12/abs/nchembio836.html;jsessionid=EFAF8B58DDCC1CB3D2EB61B11223039B <font color="#000000">Production of isoprenoid pharmaceuticals by engineered microbes</font>] by Jay Keasling ''et al''
*[http://www.nature.com/nchembio/journal/v2/n12/abs/nchembio836.html;jsessionid=EFAF8B58DDCC1CB3D2EB61B11223039B <font color="#000000">Production of isoprenoid pharmaceuticals by engineered microbes</font>] by Jay Keasling ''et al''
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*[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-4HJRXGD-4&_user=709071&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=cac1dbad4022f85af3724a9ba787d3dd <font color="#000000">Environmentally controlled invasion of cancer cells by engineered bacteria</font>] by Chris Voigt ''et al''
*[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-4HJRXGD-4&_user=709071&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=cac1dbad4022f85af3724a9ba787d3dd <font color="#000000">Environmentally controlled invasion of cancer cells by engineered bacteria</font>] by Chris Voigt ''et al''
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===Implications===
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==Implications==
*[http://www.nature.com/nbt/journal/v25/n6/pdf/nbt0607-627.pdf<font color="#000000">DNA synthesis and biological security</font>]
*[http://www.nature.com/nbt/journal/v25/n6/pdf/nbt0607-627.pdf<font color="#000000">DNA synthesis and biological security</font>]
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Revision as of 15:20, 15 May 2009

Below is a compilation of papers and articles relevant to iGEM, synthetic biology and metabolic pathway engineering.

Introductions

  • [http://www.nature.com/nature/comics/syntheticbiologycomic/index.html Adventures in synthetic biology] a comic by Drew Endy
  • [http://www.etcgroup.org/en/materials/publications.html?id=602 Extreme genetic engineering: an introduction to synthetic biology]
  • [http://www.synbiosafe.eu/uploads///pdf/SciAm_BioFab_2006_06.pdf Engineering life: building a FAB for biology]


Foundations

  • [http://www.nature.com/nature/journal/v403/n6767/abs/403335a0.html A synthetic oscillatory network of transcriptional regulators] by Michael B. Elowitz and Stanislas Leibler
  • [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Construction of a genetic toggle switch in Escherichia coli] by James J. Collins et al
  • [http://dspace.mit.edu/handle/1721.1/21168 Biobricks] by Tom Knight
  • [http://www.nature.com/nature/journal/v438/n7067/abs/nature04342.html;jsessionid=3E7E09FF4E647671DF79F2A37BC3632F Foundations for engineering biology] by Drew Endy


Perspectives

  • [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17251159&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Biology by Design] by You et al
  • [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KWTFBB-3&_user=709071&_coverDate=10%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=55327bdfbda5081b078808963c8a92b6 Genetic parts to program bacteria] by Chris Voigt
  • [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KPX8RY-1&_user=709071&_coverDate=10%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=7a316893fbee50cab2742cc3b6de73b4 Systems biology as a foundation for genome-scale synthetic biology] by B. Palsson et al


Applications

Artemisinin project

  • [http://www.nature.com/nchembio/journal/v2/n12/abs/nchembio836.html;jsessionid=EFAF8B58DDCC1CB3D2EB61B11223039B Production of isoprenoid pharmaceuticals by engineered microbes] by Jay Keasling et al
  • [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17239639&ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumBalancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli] by Jay Keasling et al

Tumor-destroying bacteria project

  • [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-4HJRXGD-4&_user=709071&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=cac1dbad4022f85af3724a9ba787d3dd Environmentally controlled invasion of cancer cells by engineered bacteria] by Chris Voigt et al


Implications

  • [http://www.nature.com/nbt/journal/v25/n6/pdf/nbt0607-627.pdfDNA synthesis and biological security]


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