Team:UC Davis/Project

From 2009.igem.org

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style="border: 0px solid ; width: 78px; height: 37px;"></a>&nbsp;<a
style="border: 0px solid ; width: 78px; height: 37px;"></a>&nbsp;<a
-
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+
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-
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<hr style="width: 100%; height: 2px;">
<hr style="width: 100%; height: 2px;">
-
<div style="text-align: left;"><b style="color: rgb(0, 0, 0);"><big><big>Project:</big></big><br>
+
<div style="text-align: left;"><b style="color: rgb(0, 0, 0);"><big
 +
style="text-decoration: underline;"><big>Project:</big></big><br>
</b>
</b>
<div style="text-align: center;"><b style="color: rgb(0, 0, 0);"><a
<div style="text-align: center;"><b style="color: rgb(0, 0, 0);"><a
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<small><u><span
<small><u><span
style="font-size: 20pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
style="font-size: 20pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
-
style="font-weight: bold;"><a name="celiac_disease"></a>Celiac Disease:</span><br>
+
style="font-weight: bold;"><a name="celiac_disease"></a></span></span></u></small><span
-
</span></u></small><i style="font-weight: bold;"><span
+
style=""><big style="font-style: italic;"><span
-
style="font-size: 14pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
+
style="font-weight: bold;">What is Celiac Disease?</span></big><o:p></o:p></span>
-
</span></i><i><span
+
<p>&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; Celiac Disease is autoimmune
-
style="font-size: 14pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">What
+
disorder that occurs inside the small
-
is Celiac Disease?</span></i><br>
+
-
<i><u><span
+
-
style="font-size: 20pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"></span></u></i><span
+
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">&nbsp;&nbsp;&nbsp;
+
-
&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; Celiac
+
-
Disease is a form of autoimmune disorder, which occurs inside the small
+
intestine. When the body cannot digest gliadin (component of gluten)
intestine. When the body cannot digest gliadin (component of gluten)
properly,
properly,
-
this leads to an immune response (14). Furthermore, different people
+
this leads to an immune response in the surface of the small intestine
-
have
+
(14).
-
different reactions to these immune responds such as pain and vomiting
+
Furthermore, different people have different reactions to this immune
-
(14). It
+
response
-
has been estimated that about one out of 133 Americans are currently
+
such as bloating, diarrhea, and weight loss (14). It has been estimated
-
suffering
+
that
-
from this disease (11); including one of our teammate's friends, and
+
about one out of 133 Americans are currently suffering from this
-
that was
+
disease (11);
-
what sparked our interest in designing this project.</span><span
+
including one of our teammate's friends, and that was what sparked our
-
style="font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span style="">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+
interest
-
</span></span><span
+
in designing this project. <o:p></o:p></p>
-
style="font-size: 14pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+
<h2><small><a style="font-style: italic;"
-
style=""></span><span style=""></span></span><span
+
name="123e28be1357843b_What_happens_in_the_nor"></a></small><span
-
style="font-style: italic;"><span
+
style=""><small><span style="font-style: italic;">What happens in the
-
style="font-size: 14pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
+
normal small
-
<br>
+
intestine?</span></small><o:p></o:p></span></h2>
-
What happens in the normal small
+
<p>&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; In the normal small intestine,
-
intestine?</span></span><span
+
the brush border membrane on the surface
-
style="font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p></span><span
+
digests starches and other sugars, proteins, and fat droplets and lets
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
+
their
-
&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; In
+
breakdown products pass into the bloodstream. <o:p></o:p></p>
-
the normal small intestine, the Brush border membrane lets small
+
<h2><a name="123e28be1357843b_What_happens_in_Celiac_"></a><span
-
peptides and
+
style=""><small style="font-style: italic;">What happens in Celiac
-
molecules like water through and into the bloodstream. The brush border
+
disease small
-
membrane also lets larger molecules into the blood stream, similar to
+
intestine?</small><o:p></o:p></span></h2>
-
Gliadin;
+
<p>&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; The brush border membrane in
-
however, these larger molecules are converted through a transcellular
+
the small intestine of people suffering from
-
route, which
+
Celiac Disease allows large molecules such as gliadin to go straight
-
does not prompt an immune system response.<o:p></o:p></span><i><span
+
into the
-
style="font-size: 14pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
+
blood stream without directing them through the transcellular route.
-
<br>
+
Once
-
What
+
gliadin passes through, Antigen Presenting Cells (APCs) recognize
-
happens in celiac disease small intestine?</span></i><i><span
+
gliadin as a
-
style="font-size: 14pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+
foreign object and will attack. This immune response results in
-
style="">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+
inflammation of
-
</span><o:p></o:p></span></i><span
+
the surface of the intestine with loss of the normal cells required for
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
+
absorption of sugars, protein, and fat from the diet. <o:p></o:p></p>
-
&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; The
+
<p>The immune response not only causes abdominal pain, bloating,
-
Brush border membrane in the small intestine of people suffering from
+
diarrhea and
-
Celiac Disease
+
weight loss it may also damage intestinal villi, which are important
-
allows large molecules such as gliadin to go straight into the blood
+
for
-
stream
+
absorbing nutrients. The destruction of villi eventually leads to a
-
without directing them through the transcellular route. Once gliadin
+
lack of
-
passes
+
absorption of different nutrients, which can lead to malnutrition (14).
-
through, Antigen Presenting Cells (APCs) recognize gliadin as a foreign
+
Some
-
object
+
people affected with this disorder can also suffer from autoimmune
-
and will attack. This immune response causes pain and other adverse
+
thyroid
-
side-effects.<o:p></o:p></span>
+
disease, autoimmune liver disease, and rheumatoid arthritis (<i>diseases
-
<p class="MsoNormal" style="text-indent: 0.5in;"><span
+
in
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">The
+
which body immune system attacks healthy cells/tissues</i>) (14). <o:p></o:p></p>
-
immune response not only causes abdominal bloating, pain, weight loss
+
-
and
+
-
vomiting, most of the time it may also damage intestinal villi, which
+
-
are
+
-
important for absorbing nutrition. The destruction of villi eventually
+
-
leads to
+
-
a lack of absorption of different nutrients, which can lead to other
+
-
illnesses
+
-
(14). Some people affected with this disorder can also suffer from </span><span
+
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">autoimmune
+
-
thyroid disease, autoimmune liver disease, rheumatoid arthritis </span><i><span
+
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">(diseases
+
-
in which body immune system attacks healthy cells/tissues)</span></i><span
+
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">
+
-
(14).</span><b><span
+
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
+
-
</span></b></p>
+
<hr style="width: 100%; height: 2px;">
<hr style="width: 100%; height: 2px;">
-
<p class="MsoListParagraph" style=""><u><span
+
<p><u><span
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><big><big><span
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><big><big><span
style="font-weight: bold;"><a name="current_treatment"></a>Current
style="font-weight: bold;"><a name="current_treatment"></a>Current
-
treatments:</span></big></big><o:p></o:p></span></u></p>
+
treatments:</span></big></big><o:p></o:p></span></u><br>
-
<p class="MsoNormal" style="line-height: normal;"><b><span
+
<b><span
-
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"></span></b><span
-
</span></b><span
+
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"></span><br>
-
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">Currently,
+
&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; Currently, no cure has been found
-
no cure has been found
+
for this illness. The only way to avoid
-
for this illness. The only way to avoid some of celiac disease’s
+
some of celiac disease’s symptoms is by adopting a gluten free diet
-
symptoms is by
+
(14, 12,
-
adopting a gluten free diet (14, 12, and 11). However, you are more
+
and 11). However, you are more likely to find gluten in your everyday
-
likely to
+
diet, and
-
find gluten in your everyday diet. Therefore, avoiding gluten is not
+
people with celiac disease must purchase gluten-free substances from
-
easy or
+
specialized grocery stores. "Oral supplementation with prolyl
-
pleasant from a gastronomical standpoint.<br>
+
oligopeptidases that can digest and detoxify gluten has therefore been
-
</span><span
+
-
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p>
+
-
&nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;
+
-
"Oral supplementation with prolyl oligopeptidases has therefore been
+
proposed
proposed
as a potential therapeutic approach."(8). However, enzymes studied
as a potential therapeutic approach."(8). However, enzymes studied
earlier
earlier
-
were not able to degrade gluten (inside stomach before it reaches small
+
were not able to degrade gluten inside stomach (before it reaches small
-
intestine because they were "irreversibly inactivated by pepsin and
+
intestine) because they were "irreversibly inactivated by pepsin and
-
acidic
+
acidic pH, both present in the stomach."(8) <o:p></o:p></p>
-
pH, both present in the stomach."(8)<o:p></o:p></span><span
+
<p>&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; Nevertheless, over the past
-
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><br>
+
years, researchers have discovered an enzyme
-
&nbsp; &nbsp; &nbsp;&nbsp; &nbsp;&nbsp;&nbsp;&nbsp;
+
from <i>Aspergillus niger</i>, a newly identified prolyl endoprotease,
-
Nevertheless, over the past years, researchers have discovered an
+
that was
-
enzyme from <i>Aspergillus
+
observed to "work optimally at 4-5pH and remains stable at 2pH"(8)
-
niger</i>, a newly identified prolyl endoprotease, that was observed to
+
and maybe this enzyme will lead us to an alternative treatment for this
-
"work optimally at 4-5pH and remains stable at 2pH"(8) and maybe this
+
disorder (8). Studies have shown that prolyl-endoprotease from <i>Aspergillus
-
enzyme will lead us to an alternative treatment for this disorder (8).
+
niger</i> is able to "degrade gluten in vitro and under conditions
-
Studies
+
similar
-
have shown that prolyl-endoprotease from <i>Aspergillus niger</i> is
+
to the ones present in the gastrointestinal tract." (8)&nbsp;; but due
-
able to
+
to
-
"degrade gluten in vitro and under conditions similar to the ones
+
licensing restrictions we have opted not to work with this protein. <o:p></o:p></p>
-
present
+
<p>&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; Recently (year 2007), a study
-
in the gastrointestinal tract." (8) ; but due to licensing restrictions
+
has suggested an alternative approach by
-
we
+
-
have opted not to work with this protein.</span><span
+
-
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p></span><br>
+
-
<span style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+
-
Recently (year 2007), a study has suggested an alternative approach by
+
combining a glutamine-specific endoprotease (EP-B2 from barley) and a
combining a glutamine-specific endoprotease (EP-B2 from barley) and a
prolyl
prolyl
Line 199: Line 168:
can therefore be administered as lyophilized powders or simple capsules
can therefore be administered as lyophilized powders or simple capsules
or
or
-
tablets” (12).</span><span
+
tablets” (12). <o:p></o:p></p>
-
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p></span></p>
+
<p><i>Note: Moreover, this study was first “evaluated via in vitro
 +
digestion of
 +
whole-wheat bread and then confirmed by in vivo studies in rats (12),
 +
unlike
 +
other earlier studies which were performed on synthetic gluten
 +
oligopeptides,
 +
recombinant gliadin proteins, or uncooked gluten” (12).</i> <o:p></o:p></p>
<p class="MsoNormal" style="line-height: normal;"><i><span
<p class="MsoNormal" style="line-height: normal;"><i><span
-
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">Note:
+
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"></span></i><span
-
Moreover, this study was first
+
-
“evaluated via in vitro digestion of whole-wheat beard and then
+
-
confirmed by in
+
-
vivo studies in rats (12), unlike other earlier studies which were
+
-
performed on
+
-
synthetic gluten oligopeptides, recombinant gliadin proteins, or
+
-
uncooked
+
-
gluten” (12).</span></i><span
+
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p></span></p>
style="font-size: 12pt; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><o:p></o:p></span></p>
<hr style="width: 100%; height: 2px;"><b><u><span
<hr style="width: 100%; height: 2px;"><b><u><span
Line 216: Line 183:
name="our_approach"></a>Our
name="our_approach"></a>Our
approach:<o:p></o:p></span></u></b>
approach:<o:p></o:p></span></u></b>
-
<p class="MsoNormal"><span
+
<p>&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; Gliadin induces an immune
-
style="font-size: 16pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+
system response when it is absorbed into
-
style="">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span><span
+
the blood stream through the small intestine. We plan to take advantage
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;">We
+
of this by breaking down gliadin in the stomach before it reaches the
-
are going to break down gluten inside the stomach (before it arrives to
+
small intestine. We have developed a secretion system to release an
-
the
+
enzyme that can break down gliadin. Also, in order to prevent our
-
small intestine), because gliadin does not prompt an immune system
+
delivery system from taking residence anywhere outside of the stomach,
-
response until
+
we plan to incorporate the difference in pH between the stomach and
-
it is absorbed in the small intestine.<span style="">&nbsp;
+
small intestine with a pH-inducible apoptosis system. By adopting these
-
</span>Another worry is a spread of our synthetic bug, so we engineered
+
two systems, we will create a pH-moderated secretion system.<br>
-
a
+
&nbsp;&nbsp;&nbsp; &nbsp;&nbsp;&nbsp; Unlike other suggested treatments
-
‘safety-switch’ via induction of cell death through a pH sensor system.<span
+
requiring the consumption of capsules or tablets, our method of using <i>E.
-
style="">&nbsp; </span>Due to the change of pH from the stomach to
+
coli</i> as our delivery system is more cost- and time-efficient.
-
the small intestine, our pH system is induced; cell death, thus
+
</p>
-
limiting our
+
-
bug to the stomach.<o:p></o:p></span></p>
+
-
<p class="MsoNormal"><span
+
-
style="font-size: 12pt; line-height: 115%; font-family: &quot;Times New Roman&quot;,&quot;serif&quot;;"><span
+
-
style="">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+
-
</span>The
+
-
advantages of our model are, that unlike other suggested treatments
+
-
which
+
-
require consuming capsules or tablets rapidly, by using <i><span
+
-
style="color: black;">Escherichia coli</span></i><span
+
-
style="color: black;"> as
+
-
our model chassis for this project: we can lower the number of times
+
-
which this
+
-
‘cure’ needs to be consumed thus making it less troublesome, costly,
+
-
and more
+
-
convenient.<br>
+
-
</span></span></p>
+
<hr style="width: 100%; height: 2px;">
<hr style="width: 100%; height: 2px;">
<p class="MsoNormal"><span style="font-weight: bold;">Our project is
<p class="MsoNormal"><span style="font-weight: bold;">Our project is

Revision as of 04:34, 26 September 2009

lol

   
Project:
Celiac Disease          Current treatment           Our Approach
What is Celiac Disease?

        Celiac Disease is autoimmune disorder that occurs inside the small intestine. When the body cannot digest gliadin (component of gluten) properly, this leads to an immune response in the surface of the small intestine (14). Furthermore, different people have different reactions to this immune response such as bloating, diarrhea, and weight loss (14). It has been estimated that about one out of 133 Americans are currently suffering from this disease (11); including one of our teammate's friends, and that was what sparked our interest in designing this project.

What happens in the normal small intestine?

        In the normal small intestine, the brush border membrane on the surface digests starches and other sugars, proteins, and fat droplets and lets their breakdown products pass into the bloodstream.

What happens in Celiac disease small intestine?

        The brush border membrane in the small intestine of people suffering from Celiac Disease allows large molecules such as gliadin to go straight into the blood stream without directing them through the transcellular route. Once gliadin passes through, Antigen Presenting Cells (APCs) recognize gliadin as a foreign object and will attack. This immune response results in inflammation of the surface of the intestine with loss of the normal cells required for absorption of sugars, protein, and fat from the diet.

The immune response not only causes abdominal pain, bloating, diarrhea and weight loss it may also damage intestinal villi, which are important for absorbing nutrients. The destruction of villi eventually leads to a lack of absorption of different nutrients, which can lead to malnutrition (14). Some people affected with this disorder can also suffer from autoimmune thyroid disease, autoimmune liver disease, and rheumatoid arthritis (diseases in which body immune system attacks healthy cells/tissues) (14).


Current treatments:

        Currently, no cure has been found for this illness. The only way to avoid some of celiac disease’s symptoms is by adopting a gluten free diet (14, 12, and 11). However, you are more likely to find gluten in your everyday diet, and people with celiac disease must purchase gluten-free substances from specialized grocery stores. "Oral supplementation with prolyl oligopeptidases that can digest and detoxify gluten has therefore been proposed as a potential therapeutic approach."(8). However, enzymes studied earlier were not able to degrade gluten inside stomach (before it reaches small intestine) because they were "irreversibly inactivated by pepsin and acidic pH, both present in the stomach."(8)

        Nevertheless, over the past years, researchers have discovered an enzyme from Aspergillus niger, a newly identified prolyl endoprotease, that was observed to "work optimally at 4-5pH and remains stable at 2pH"(8) and maybe this enzyme will lead us to an alternative treatment for this disorder (8). Studies have shown that prolyl-endoprotease from Aspergillus niger is able to "degrade gluten in vitro and under conditions similar to the ones present in the gastrointestinal tract." (8) ; but due to licensing restrictions we have opted not to work with this protein.

        Recently (year 2007), a study has suggested an alternative approach by combining a glutamine-specific endoprotease (EP-B2 from barley) and a prolyl endopeptidase (SC PEP from Sphingomonas capsulata); with gastric activity and complementary substrate specificity there is a possibility of increasing the safe threshold of ingested gluten (12). One of the advantages of this “combination product is that both enzymes are active and stable in stomach and can therefore be administered as lyophilized powders or simple capsules or tablets” (12).

Note: Moreover, this study was first “evaluated via in vitro digestion of whole-wheat bread and then confirmed by in vivo studies in rats (12), unlike other earlier studies which were performed on synthetic gluten oligopeptides, recombinant gliadin proteins, or uncooked gluten” (12).


Our approach:

        Gliadin induces an immune system response when it is absorbed into the blood stream through the small intestine. We plan to take advantage of this by breaking down gliadin in the stomach before it reaches the small intestine. We have developed a secretion system to release an enzyme that can break down gliadin. Also, in order to prevent our delivery system from taking residence anywhere outside of the stomach, we plan to incorporate the difference in pH between the stomach and small intestine with a pH-inducible apoptosis system. By adopting these two systems, we will create a pH-moderated secretion system.
        Unlike other suggested treatments requiring the consumption of capsules or tablets, our method of using E. coli as our delivery system is more cost- and time-efficient.


Our project is split into two parts:
1.Induced Secretion

2.Sensing pH  and inducing cell death