User contributions

From 2009.igem.org

For Wiltshir (talk | block log | logs)

(Latest | Earliest) View (newer 50 | older 50) (20 | 50 | 100 | 250 | 500)

07:12, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Gene splicing and mutagenesis by PCR driven overlap extension ‎ (New page: Karin L. Heckman and Larry R. Pease Nature Protocols 2, - 924 - 932 (2007) Abstract: Extension of overlapping gene segments by PCR is a simple, versatile technique for site-dire...) (top)
07:11, 20 October 2009 (diff | hist) m Team:Alberta/References/Keyword ‎
07:10, 20 October 2009 (diff | hist) m Team:Alberta/References/Keyword ‎
07:09, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli ‎ (New page: Christopher D. Herring, Jeremy D. Glasner and Frederick R. Blattner Gene. 2003 Jun 5;311:153-63 Abstract: We have developed a method called ‘gene gorging’ to make precise mut...) (top)
07:08, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/DNA cloning by homologous recombination in Escherichia coli ‎ (New page: Youming Zhang, Joep P.P. Muyrers, Giuseppe Testa, and A. Francis Stewart Nature Biotechnology 18, 1314 - 1317 '''Abstract:''' The cloning of foreign DNA in Escherichia coli episomes ...) (top)
07:07, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Conditional-Replication, Integration, Excision, and Retrieval Plasmid-Host Systems for Gene Structure-Function Studies of Bacteria ‎ (New page: Andreas Haldimann and Barry L. Wanner J Bacteriol. 2001 November; 183(21): 6384–6393 Abstract: We have developed a series of powerful and versatile conditional-replication, int...) (top)
07:07, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector ‎ (New page: Hiroaki Shizuya, Bruce Birren, Ung-Jin Kim, Valeria Mancino, Tatiana Slepak, Yoshiaki Tachiiri and Melvin Simon PNAS September 15, 1992 vol. 89 no. 18 8794-8797 '''Abstract:''' A bacter...) (top)
07:06, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Biochemistry of homologous recombination in Escherichia coli ‎ (New page: Stephen C. Kowalczykowski, Dan A. Dixon, Angela K. Eggleston, Scott D. Lauder and William M. Rehrauer Microbiol Rev. 1994 Sep;58(3):401-65 Abstract: Homologous recombination is a...) (top)
07:06, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Engineering of bacterial ribosomes: Replacement of all seven Escherichia coli rRNA operons by a single plasmid-encoded operon ‎ (New page: Masayasu Nomura Proc Natl Acad Sci U S A. 1999 March 2; 96(5): 1820–1822 Abstract: N/A Link: [http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid...) (top)
07:04, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Stochastic simulations of DNA in flow: dynamics and the effects of hydrodynamic interactions ‎ (New page: Richard M. Jendrejack, Juan J. de Pablo and Michael D. Graham JOURNAL OF CHEMICAL PHYSICS VOLUME 116, NUMBER 17 '''Abstract:''' We present a fully parametrized bead–spring chain model...) (top)
07:04, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Shear unzipping of DNA ‎ (New page: Buddhapriya Chakrabarti and David R. Nelson J. Phys. Chem. B, 2009, 113 (12), pp 3831–3836 Abstract: We study theoretically the mechanical failure of a simple model of double-s...) (top)
07:03, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Shear-induced degradation of plasmid DNA ‎ (New page: C. S. Lengsfeld and T. J. Anchordoquy J Pharm Sci. 2002 Jul;91(7):1581-9 '''Abstract:''' The majority of gene therapy clinical trials use plasmid DNA that is susceptible to shear-induce...) (top)
07:02, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Shear degradation of DNA ‎ (New page: Randall E. Adam and Bruno H. Zimm Nucleic Acids Res. 1977 May; 4(5): 1513–1537 Abstract: A concentric-cylinder flow-birefringence instrument is used to generate sufficient shea...) (top)
07:02, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Shear breakage of DNA ‎ (New page: Barry M. Dancis Biophys J. 1978 November; 24(2): 489–503 Abstract: Determinations were made of the mean length of fragments produced after shearing long (> 100 kb) native Hela ...) (top)
07:01, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays ‎ (New page: Jonathan A. Bernstein, Arkady B. Khodursky, Pei-Hsun Lin, Sue Lin-Chao, and Stanley N. Cohen PNAS July 23, 2002 vol. 99 no. 15 9697-9702 '''Abstract:''' Much of the information availab...) (top)
07:01, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Folding and unfolding single RNA molecules under tension ‎ (New page: Michael T Woodside, Cuauhtemoc Garcia-Garcia and Steven M Block Current Opinion in Chemical Biology Volume 12, Issue 6, December 2008, Pages 640-646 '''Abstract:''' Single-molecule for...) (top)
07:01, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/The effect of hydrodynamic shear of DNA from T2 and T4 bacteriophages ‎ (New page: M.S. Levy, IJ. Collins, S.S. Yim, J.M. Ward, N. Titchener-Hooker, P. Ayazi Shamlou, and P. Dunnill Biotechnology and Bioengineering Volume 87 Issue 3, Pages 293 - 302 '''Abstract:''' Th...) (top)
07:00, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Dynamic strength of molecular adhesion bonds ‎ (New page: Evan Evans and Ken Ritchie Biophys J. 1997 Apr;72(4):1541-55 Abstract: In biology, molecular linkages at, within, and beneath cell interfaces arise mainly from weak noncovalent i...) (top)
06:59, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Binding of biotinylated DNA to streptavidin-coated polystyrene latex: effects of chain length and particle size ‎ (New page: Shao-Chie Huang, Mark D. Stump, Robert Weiss, and Karin D. Caldwell Analytical Biochemistry Volume 237, Issue 1, 15 May 1996, Pages 115-122 '''Abstract:''' The binding of 5'-end biotin...) (top)
06:59, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Programming gene expression with combinatorial promoters ‎ (New page: Robert Sidney Cox, III, Michael G Surette, and Michael B Elowitz Mol Syst Biol. 2007;3:145 '''Abstract:''' Promoters control the expression of genes in response to one or more transcrip...) (top)
06:58, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli ‎ (New page: E.A. Morgan, T. Ikemura and M. Nomura Proc Natl Acad Sci U S A. 1977 July; 74(7): 2710–2714 Abstract: Transfer RNA genes ("spacer tRNA genes") are present in the spacer region ...) (top)
06:58, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Idempotent Vector Design for Standard Assembly of Biobricks ‎ (New page: Tom Knight MIT Artificial Intelligence Laboratory; MIT Synthetic Biology Working Group 2003 '''Abstract:''' The lack of standardization in assembly techniques for DNA sequences forces e...) (top)
06:57, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Genome-wide expression profiling in Escherichia coli K-12 ‎ (New page: C S Richmond, J D Glasner, R Mau, H Jin, and F R Blattner Nucleic Acids Res. 1999 October 1; 27(19): 3821–3835 '''Abstract:''' We have established high resolution methods for global m...) (top)
06:56, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Effect of dna Mutations on the Replication of Plasmid pSC101 in Escherichia coli K-12 ‎ (New page: K. Hasunuma and M. Sekiguchi J Bacteriol. 1979 March; 137(3): 1095–1099 Abstract: Escherichia coli strains with mutations in genes dnaB, dnaC, and dnaG were tested for their ca...) (top)
06:56, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Compilation and analysis of Escherichia coli promoter DNA sequences ‎ (New page: Diane K.Hawley and William R.McClure Nucleic Acids Research, 1983, Vol. 11, No. 8 2237-2255 '''Abstract:''' The DNA sequence of 168 promoter regions (-50 to +10) for Escherichia coli RN...) (top)
06:55, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Coding-sequence determinants of gene expression in Escherichia coli ‎ (New page: Grzegorz Kudla, Andrew W. Murray, David Tollervey and Joshua B. Plotkin Science 10 April 2009: Vol. 324. no. 5924, pp. 255 - 258 Abstract: Synonymous mutations do not alter the e...) (top)
06:55, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Site-directed Mutational Analysis for the ATP Binding of DnaA Protein ‎ (New page: Tohru Mizushima, Tohru Takaki, Toshio Kubota, Tomofusa Tsuchiya, Takeyoshi Miki, Tsutomu Katayama and Kazuhisa Sekimizu J Biol Chem. 1998 Aug 14;273(33):20847-51 Abstract: DnaA p...) (top)
06:54, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Operon Structure of dnaT and dnaC Genes Essential for Normal and Stable DNA Replication of Escherichia coli Chromosome ‎ (New page: H. Masai and K. Arai J Biol Chem. 1988 Oct 15;263(29):15083-93 Abstract: dnaT and dnaC of Escherichia coli, whose products are components of the primosome, encode genes essentia...) (top)
06:54, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/The Heat-Shock-Regulated grpE Gene of Escherichia coli Is Required for Bacterial Growth at All Temperatures but Is Dispensable in Certain Mutant Backgrounds ‎ (New page: D. Ang and C. Georgopoulos J Bacteriol. 1989 May; 171(5): 2748–2755 Abstract: Previous work has established that the grpE+ gene product is a heat shock protein that is essentia...) (top)
06:53, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Experimental determination and systems level analysis of essential genes in Escherichia coli MG1665 ‎ (New page: S.Y. Gerdes, M.D. Scholle, J.W. Campbell, G. Bala´zsi, E. Ravasz, M.D. Daugherty, A.L. Somera, N.C. Kyrpides, I. Anderson, M.S. Gelfand, A. Bhattacharya, V. Kapatral, M. D’Souza, M.V. B...) (top)
06:53, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Determination of the core of a minimal bacterial gene set ‎ (New page: Rosario Gil, Francisco J. Silva, Juli Peretó and Andrés Moya Microbiology and Molecular Biology Reviews, September 2004, p. 518-537, Vol. 68, No. 3 Abstract: The availability o...) (top)
06:52, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Complete set of ORF clones of Escherichia coli ASKA library (a complete set of Escherichia coli K-12 ORF archive): unique resources for biological research ‎ (New page: Masanari Kitagawa, Takeshi Ara, Mohammad Arifuzzaman, Tomoko Ioka-Nakamichi, Eiji Inamoto, Hiromi Toyonaga and Hirotada Mori DNA Res. 2005;12(5):291-9. Epub 2006 Jan 9 Abstract: ...) (top)
06:52, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Chromosomal Locations of the Genes for rRNA in Escherichia coli K-12t ‎ (New page: M. Ellwood and M. Nomura J Bacteriol. 1982 February; 149(2): 458–468 Abstract: Chromosomal locations of the seven rRNA operons in Escherichia coli K-12 were studied by digestin...) (top)
06:51, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame ‎ (New page: A.M. Flower and C.S. McHenry Nucleic Acids Res. 1986 October 24; 14(20): 8091–8101 Abstract: The dnaZ and dnaX loci of Escherichia coli have been genetically defined as separat...) (top)
06:50, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110 ‎ (New page: Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L. Wanner, Hirotada Mori and Takashi Horiuchi Molecular S...) (top)
06:50, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Fermentation pathways of Escherichia coli, The ‎ (New page: David P. Clark FEMS Microbiol Rev. 1989 Sep;5(3):223-34 Abstract: Under anaerobic conditions and in the absence of alternative electron acceptors Escherichia coli converts sugars...) (top)
06:50, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Escherichia coli physiology in Luria-Bertani broth ‎ (New page: Guennadi Sezonov, Daniele Joseleau-Petit, and Richard D'Ari Journal of Bacteriology, December 2007, p. 8746-8749, Vol. 189, No. 23 '''Abstract:''' Luria-Bertani broth supports ''Escheri...) (top)
06:48, 20 October 2009 (diff | hist) Team:Alberta/References/Publications/USERTM friendly DNA engineering and cloning method by uracil excision ‎ (top)
06:47, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/USERTM friendly DNA engineering and cloning method by uracil excision ‎ (New page: Jurate Bitinaite, Michelle Rubino, Kamini Hingorani Varma, Ira Schildkraut, Romualdas Vaisvila and Rita Vaiskunaite Nucleic Acids Res. 2007;35(6):1992-2002. Epub 2007 Mar 6. '''Abstract...)
06:47, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Structural basis for uracil recognition by archaeal family B DNA polymerases ‎ (New page: Mark J. Fogg, Laurence H. Pearl & Bernard A. Connolly Nature Structural Biology 9, 922 - 927 (2002) '''Abstract:''' Deamination of cytosine to uracil in a G-C base pair is a major pro...) (top)
06:47, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Shear induced assembly of lambda phage DNA ‎ (New page: Charbel Haber and Denis Wirtz Biophys J. 2000 September; 79(3): 1530–1536 Abstract: Recombinant DNA technology, which is based on the assembly of DNA fragments, forms the backb...) (top)
06:46, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/The replication-related organization of bacterial genomes ‎ (New page: Eduardo P. C. Rocha Microbiology (2004), 150, 1609–1627 '''Abstract:''' The replication of the chromosome is among the most essential functions of the bacterial cell and influences ma...) (top)
06:46, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Refactoring bacteriophage T7 ‎ (New page: Leon Y. Chan, Sriram Kosuri and Drew Endy Mol Syst Biol. 2005;1:2005.0018 Abstract: Natural biological systems are selected by evolution to continue to exist and evolve. Evolutio...) (top)
06:45, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Rebuilding microbial genomes ‎ (New page: Robert A. Holt, Rene Warren, Stephane Flibotte, Perseus I. Missirlis, and Duane E. Smailus Bioessays. 2007 Jun;29(6):580-90 Abstract: Engineered microbes are of great potential u...) (top)
06:45, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Enzymatic assembly of DNA molecules up to several hundred kilobases ‎ (New page: Daniel G Gibson, Lei Young, Ray-Yuan Chuang, J Craig Venter, Clyde A Hutchison III and Hamilton O Smith Nature Methods 6, 343 - 345 (2009) '''Abstract:''' We describe an isothermal, si...) (top)
06:44, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/DNA Replication ‎ (New page: A. Kornberg Biochim Biophys Acta. 1988 Dec 20;951(2-3):235-9 Abstract: DNA replication is crucial to life: in the duplication of the genome, in its rearrangements, and in its rep...) (top)
06:44, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine ‎ (New page: Z. Kelman and M. O'Donnell Annu Rev Biochem. 1995;64:171-200 Abstract: DNA polymerase III holoenzyme contains two DNA polymerases embedded in a particle with 9 other subunits. Th...) (top)
06:43, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium ‎ (New page: Daniel G. Gibson, Gwynedd A. Benders, Cynthia Andrews-Pfannkoch, Evgeniya A. Denisova, Holly Baden-Tillson, Jayshree Zaveri, Timothy B. Stockwell, Anushka Brownley, David W. Thomas, Mikkel...) (top)
06:43, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Rapid and efficient construction of markerless deletions in the Escherichia coli genome ‎ (New page: Byung Jo Yu, Kui Hyeon Kang, Jun Hyoung Lee, Bong Hyun Sung, Mi Sun Kim and Sun Chang Kim Nucleic Acids Research, 2008, Vol. 36, No. 14 e84 Abstract: We have developed an improve...) (top)
06:42, 20 October 2009 (diff | hist) N Team:Alberta/References/Publications/Engineering a reduced Escherichia coli genome ‎ (New page: Vitaliy Kolisnychenko, Guy Plunkett III, Christopher D. Herring, Tamás Fehér, János Pósfai, Frederick R. Blattner and György Pósfai Genome Res. 2002. 12: 640-647 Abstract:...) (top)

(Latest | Earliest) View (newer 50 | older 50) (20 | 50 | 100 | 250 | 500)