Team:Virginia Commonwealth/Literature

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Below is a compilation of papers and articles relevant to iGEM, synthetic biology and metabolic pathway engineering.

Introductions

  • [http://www.nature.com/nature/comics/syntheticbiologycomic/index.html Adventures in synthetic biology] a comic by Drew Endy
  • [http://www.etcgroup.org/en/materials/publications.html?id=602 Extreme genetic engineering: an introduction to synthetic biology] by the ETC Group
  • [http://www.synbiosafe.eu/uploads///pdf/SciAm_BioFab_2006_06.pdf Engineering life: building a FAB for biology]
  • [http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=04290608 The iGEM competition: building with biology] by James Brown
  • [http://www.nature.com/nchembio/journal/v3/n9/full/nchembio0907-521.html Synthetic biology: lessons from the history of synthetic organic chemistry]
  • [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KPX8RY-1&_user=709071&_coverDate=10%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=7a316893fbee50cab2742cc3b6de73b4 Systems biology as a foundation for genome-scale synthetic biology] by B. Palsson et al.


Frameworks

  • [http://www.nature.com/nature/journal/v438/n7067/abs/nature04342.html;jsessionid=3E7E09FF4E647671DF79F2A37BC3632F Foundations for engineering biology] by Drew Endy
  • [http://dspace.mit.edu/handle/1721.1/21168 Idempotent Vector Design for Standard Assembly of Biobricks] by Tom Knight
  • [http://www.nature.com/nbt/journal/v26/n7/full/nbt1413.html Refinement and standardization of synthetic biological parts and devices]
  • [http://www.jbioleng.org/content/3/1/4 Measuring the activity of BioBrick promoters using an in vivo reference standard]
  • [http://www.jbioleng.org/content/2/1/5 Engineering BioBrick vectors from BioBrick parts] by Reshma Shetty et al.
  • [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17251159&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Biology by design: reduction and synthesis of cellular components and behaviour] by You et al.
  • [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KWTFBB-3&_user=709071&_coverDate=10%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=55327bdfbda5081b078808963c8a92b6 Genetic parts to program bacteria] by Chris Voigt
  • [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VS2-4TX12FT-1&_user=709070&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039639&_version=1&_urlVersion=0&_userid=709070&md5=9a7b6f98545b46524dd3e2b938d4c75e Toward scalable parts families for predictable design of biological circuits] by Julius Lucks et al.


Foundations

  • [http://www.nature.com/nature/journal/v403/n6767/abs/403335a0.html A synthetic oscillatory network of transcriptional regulators] by Michael B. Elowitz and Stanislas Leibler
  • [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Construction of a genetic toggle switch in Escherichia coli] by James J. Collins et al.


Applications

Artemisinin project

  • [http://www.nature.com/nchembio/journal/v2/n12/abs/nchembio836.html;jsessionid=EFAF8B58DDCC1CB3D2EB61B11223039B Production of isoprenoid pharmaceuticals by engineered microbes] by Jay Keasling et al.
  • [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17239639&ordinalpos=12&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSumBalancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli] by Jay Keasling et al.

Tumor-destroying bacteria project

  • [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-4HJRXGD-4&_user=709071&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=cac1dbad4022f85af3724a9ba787d3dd Environmentally controlled invasion of cancer cells by engineered bacteria] by Chris Voigt et al.


Implications

  • [http://www.nature.com/nbt/journal/v25/n6/pdf/nbt0607-627.pdf DNA synthesis and biological security]
  • [http://www.thenewatlantis.com/docLib/TNA12-TuckerZilinskas.pdf The promise and perils of synthetic biology] by J. Tucker and R. Zilinskas


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