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Team:Imperial College London/Major results
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Major Results
This page contains highlights of our major results and simulations. It is by no means complete. However, more results will be presented at the jamboree.
Genome Digestion Assay
- The wet lab has also investigated the effects of restriction enzymes on cell population.
In this assay, we performed a restriction digestion on Dam negative and Dam positive strains, using restriction enzymes DpnII and TaqI, to investigate their effects on the two strains.
Positive results were achieved.
From the gels above, we notice that there are 'smears'in the gels for the Dam negative strains. These 'smears'are created when the Dam negative strains are fully cleaved at all different concentrations of restriction enzyme. As the cleaved DNA fragments are all of varying, but short lengths, a smear is produced.
From these results, we have shown that restriction enzymes can cleave Dam negative strains, hence killing Dam negative cells. This also proves Dam positive strains are protected again genomic deletion.
Cell population model
Furthermore, the dry lab has provided a model on cell population under the production of restriction enzymes.
We have shown that an increase in restriction enzyme concentration will cause a decrease total cell population, under the absence of Dam protection.
Module Integration - Autoinduction
- Growth experiments on a secondary media source were performed on the CRP promoter. From this experiment, we are able to choose the best secondary media for the optimal growth of cells.
From the graph on the right, we can see that the corrected fluorescence of glucose is almost negligible. Therefore, we have proved the theory that glucose represses the PcstA promoter strongly.
To determine the best secondary media, we note that 10% Casamino Acids in M9 media shows the highest corrected fluorescence as well as a high corrected OD600. This indicates good cell growth. No other media is comparable. Therefore, this is our secondary media of choice.
About the processed results.
Characterisation of BBa_K00022
In this experiment, we want to investigate the behaviour of the lamda-cI thermoinducible promoter. Furthermore, this analysis serves to characterize the construct BBa_K200022, submitted by Harvard last year.
The characterization of the thermoinducible promoter is as follows:
- At 28°C, we cannot observe any fluorescence (GFP) output because its expression is repressed
- At 42°C, we can observe an increase in fluorescence (GFP) output, as its expression is no longer repressed
Hence, we can conclude that in The E.ncapsulator system, an increase in temperature de-represses the expression of downstream genes, which will trigger the genome deletion phase.
About our processed results.
References
[1]Physica A: Statistical and Theoretical Physics, Vol. 188, No. 1-3. (1 September 1992), pp. 404-425. A rigorous derivation of the chemical master Equation
