Team:Imperial College London/Thermoinduction

From 2009.igem.org

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Please delete as completed.<br>
 
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Thermoinduction feedback from todays session:<br>
 
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3) Results: Make the text on the graphs bigger & remove Harvard in the title! Use K098995 and link to registry.<br>
 
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4) Results: Explain what the assay is - link<br>
 
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5) <b>PRESENT DATA AS CHARACTERISATION OF EXISTING BIOBRICK!!!</b> - Title it this<br>
 
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6) If no data exists - say that as the wiki is being frozen we haven't added the data but will have it in time for the Jamboree.<br>
 
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7) Have a rationale section.<br>
 
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8) Add what teams can reuse from this module.<br>
 
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9) Have a conclusion of the page at the end - couple of lines.<br>
 
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10) Link to the relevant Wet Lab section<br>
 
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11) Remove !'s in learn mores<br>
 
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=<font size='5'><b>Module Integration - Thermoinduction</b></font>=
 
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<a href="http://i691.photobucket.com/albums/vv271/dk806/MainOverviewPicTI.jpg" class="highslide" onclick="return hs.expand(this, config1)">
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<a href="https://static.igem.org/mediawiki/2009/0/02/II09_MapIndicator_Thermoinduction.png" class="highslide" onclick="return hs.expand(this, config1)" title="After encapsulation is complete, the temperature is raised which activates the thermosensitive system">
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<img src="http://i691.photobucket.com/albums/vv271/dk806/MainOverviewPicTI.jpg" alt="" title="Click to enlarge" width="75%"/>
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<img src="https://static.igem.org/mediawiki/2009/0/02/II09_MapIndicator_Thermoinduction.png" alt="" title="Click to enlarge" width="75%"/>
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Module 2: Encapsulation
 
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=<font size='5'><b>Module Integration - Thermoinduction</b></font>=
[[Image:II09_thermo transition.jpg|600px|center]]
[[Image:II09_thermo transition.jpg|600px|center]]
==Overview==
==Overview==
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When <b>sufficient protective coating</b> has been made, the temperature of the system is raised to 42°C.  This activates the <b>thermosensitive promoter</b>, consequently triggering module 3. <br>  
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When <b>sufficient protective coating</b> has been made, the temperature of the system is raised to 42°C.  This activates the <b>thermosensitive promoter</b>, consequently triggering <b>Module 3</b>. <br>  
<br>
<br>
==Rationale==
==Rationale==
[[Image:II09_capsule_penetration2.jpg|250px|right]]
[[Image:II09_capsule_penetration2.jpg|250px|right]]
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After encapsulation, it becomes more difficult for normal <b>chemical induction</b> to penetrate the outer protective coating.  To tackle this problem, <b>heat induction</b> is used.  Heat induction is, in addition, a commonly used and highly reproducible induction method in industrial scale manufacturing processes.<br>
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After encapsulation, it becomes <b>more difficult for normal chemical induction</b> to penetrate the outer protective coating.  To tackle this problem, <b>heat induction</b> is used.  Heat induction is, in addition, a commonly used and highly reproducible induction method in industrial scale manufacturing processes.<br>
<br>
<br>
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The thermosensitive cI promoter is chosen as it is widely cited in literature for efficient thermoinduction of systems [1], and has been proven to work well in commonly available plasmids. [http://partsregistry.org/Part:BBa_K098995| BBa_K098995], in particular, is the only construct for the thermosensitive cI system in the registry and has already been characterised previously.<br>
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The thermosensitive cI promoter is chosen as it is widely cited in literature for efficient thermoinduction of systems [1], and has been proven to work well in commonly available plasmids. [http://partsregistry.org/Part:BBa_K098995 BBa_K098995], in particular, is the only construct for the thermosensitive cI system in the registry and has already been characterised previously.<br>
<br>
<br>
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[[Image:Ii09 thermo2.jpg|300px|right]]
[[Image:Ii09 thermo2.jpg|300px|right]]
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The lambda promoter ([http://partsregistry.org/wiki/index.php?title=Part:BBa_R0051| R0051]) is strongly repressed at 28 degrees by the cI repressor([http://partsregistry.org/wiki/index.php?title=Part:BBa_K098997| K098997]).  Therefore, at 28 degrees, the thermoinducible system has no activity. <br>
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The lambda promoter ([http://partsregistry.org/wiki/index.php?title=Part:BBa_R0051 R0051]) is strongly repressed at 28 degrees by the cI repressor([http://partsregistry.org/wiki/index.php?title=Part:BBa_K098997 K098997]).  Therefore, at 28 degrees, the thermoinducible system has no activity. <br>
<br>
<br>
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However, this cI repressor is unique in that it is <b>temperature-sensitive</b>, and will readily lose its functional structure as the temperature increases.  Therefore, when the temperature is raised to 42 degrees, the lambda promoter is no longer repressed and can trigger module 3. <br>
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However, this cI repressor is unique in that it is <b>temperature-sensitive</b>, and will readily lose its functional structure as the temperature increases.  Therefore, when the temperature is raised to 42°C, the lambda promoter is no longer repressed and can trigger <b>Module 3</b>. <br>
<br>
<br>
<html><a href="https://2009.igem.org/Team:Imperial_College_London/Temporal_Control/Thermoinduction/System"><img style="vertical-align:bottom;" width=50px align="left" src="http://i691.photobucket.com/albums/vv271/dk806/II09Learnmore.png"></a></html>&nbsp; <b><i>About the thermoinduction system </i></b>
<html><a href="https://2009.igem.org/Team:Imperial_College_London/Temporal_Control/Thermoinduction/System"><img style="vertical-align:bottom;" width=50px align="left" src="http://i691.photobucket.com/albums/vv271/dk806/II09Learnmore.png"></a></html>&nbsp; <b><i>About the thermoinduction system </i></b>
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==Characterisation of existing biobrick==
==Characterisation of existing biobrick==
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The thermoinducible construct ([http://partsregistry.org/Part:BBa_K098995| BBa_K098995]), an existing biobrick, is characterised by ligating it to GFP.  The cells are grown at the low temperature of 28 degrees where the promoter is inactive. The temperature is then shifted up to 42 degrees.  The GFP fluorescence is monitered throughout as an indicator of promoter activity. <br>
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The thermoinducible construct ([http://partsregistry.org/Part:BBa_K098995 BBa_K098995]), an existing biobrick, is characterised by ligating it to GFP.  The cells are grown at the low temperature of 28°C where the promoter is inactive. The temperature is then shifted up to 42°C.  The GFP fluorescence is monitored throughout as an indicator of promoter activity. <br>
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[[Image:II09_Hvd-GFPfluor.jpg|500px]]<br>
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[[Image:II09_HVD_GFP_MAIN.png]]<br>
<br>
<br>
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The GFP fluorescence is shown to be at baseline when cells are grown at 28°C.  However, when the cells undergo a temperature shift to 42°C, there is an almost immediate increase in GFP fluorescence.  <br>
<br>
<br>
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The GFP fluorescence is shown to be at baseline when cells are grown at 28 degrees.  However, when the cells undergo a temperature shift to 42 degrees, there is an almost immediate increase in GFP fluorescence. <br>
+
This shows that the activity of the lambda promoter does increase when the temperature is shifted up, so the thermoinducible construct ([http://partsregistry.org/Part:BBa_K098995 BBa_K098995]) does become activated by higher temperatures. <br>
<br>
<br>
-
This shows that the activity of the lambda promoter does increase when the temperature is shifted up, so the thermoinducible construct ([http://partsregistry.org/Part:BBa_K098995| BBa_K098995]) does become activated by higher temperatures. <br>
 
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<html><a href="https://2009.igem.org/Team:Imperial_College_London/Wetlab/Results#Thermoinduction
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<html><a href="https://2009.igem.org/Team:Imperial_College_London/Wetlab/Results
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"><img style="vertical-align:bottom;" width=50px align="left" src="http://i691.photobucket.com/albums/vv271/dk806/II09Learnmore.png"></a></html>&nbsp;<i><b> About our wet lab results</b></i>
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"><img style="vertical-align:bottom;" width=50px align="left" src="http://i691.photobucket.com/albums/vv271/dk806/II09Learnmore.png"></a></html>&nbsp;<i><b> About our wetlab results</b></i>
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==References==
==References==
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1. Wolfgang Jechlingera*, Michael P Szostaka 1 , Angela Wittea, Werner Lubitza (1999) Altered temperature induction sensitivity of the lambda pR/cI857 system for controlled gene E expression in Escherichia coli. <i>FEMS Microbiology Letters</i>. 173(2), pp 347 - 352
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[1] Wolfgang Jechlingera*, Michael P Szostaka 1 , Angela Wittea, Werner Lubitza (1999) Altered temperature induction sensitivity of the lambda pR/cI857 system for controlled gene E expression in Escherichia coli. <i>FEMS Microbiology Letters</i>. 173(2), pp 347 - 352
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===Project Tour===
<html><center>
<html><center>
<a href="https://2009.igem.org/Team:Imperial_College_London/M2"><img width=150px src="http://i691.photobucket.com/albums/vv271/dk806/Module2L.jpg"></a>
<a href="https://2009.igem.org/Team:Imperial_College_London/M2"><img width=150px src="http://i691.photobucket.com/albums/vv271/dk806/Module2L.jpg"></a>
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===Temporal control Contents===
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<html><center><a href="https://2009.igem.org/Team:Imperial_College_London/Temporal_Control/Chemical_Induction"><img style="vertical-align:bottom;" width="20%" src="http://i691.photobucket.com/albums/vv271/dk806/II09_chemicalinduction.png"></a><a href="https://2009.igem.org/Team:Imperial_College_London/Temporal_Control/Autoinduction"><img style="vertical-align:bottom;" width="20%" src="http://i691.photobucket.com/albums/vv271/dk806/II09_Drylabmainimage1.png"></a><a href="https://2009.igem.org/Team:Imperial_College_London/Temporal_Control/Thermoinduction"><img style="vertical-align:bottom;" width="20%" src="http://i691.photobucket.com/albums/vv271/dk806/II09_Thermoinduction1.png"></a><a href="https://2009.igem.org/Team:Imperial_College_London/Wetlab/Results#Temporal_Control"><img style="vertical-align:bottom;"width="20%"src="http://i691.photobucket.com/albums/vv271/dk806/II09_Wetlabmainimage9.png"></a><a href="https://2009.igem.org/Team:Imperial_College_London/Drylab/Autoinduction"><img style="vertical-align:bottom;" width="20%"  src="http://i691.photobucket.com/albums/vv271/dk806/II09_Drylabmainimage6.png"></a></center></html>
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<html><table border="0" style="background-color:transparent;" width="100%">
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<tr><td width="0%"></td>
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<td width="20%"><center><a href="https://2009.igem.org/Team:Imperial_College_London/Temporal_Control/Chemical_Induction"><b>Chemoinduction</b></a></center></td>
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<td width="20%"><center><a href="https://2009.igem.org/Team:Imperial_College_London/Temporal_Control/Autoinduction"><b>Autoinduction</b></a></center></td>
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<td width="20%"><center><a href="https://2009.igem.org/Team:Imperial_College_London/Temporal_Control/Thermoinduction"><b>Thermoinduction</b></a></center></td>
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<td width="20%"><center><a href="https://2009.igem.org/Team:Imperial_College_London/Wetlab/Results#Temporal_Control"><b>Wet Lab</b></a></center></td>
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<td width="20%"><center><a href="https://2009.igem.org/Team:Imperial_College_London/Drylab/Autoinduction"><b>Modelling</b></a></center></td></table></html>
{{Imperial/09/TemplateBottom}}
{{Imperial/09/TemplateBottom}}

Latest revision as of 03:51, 22 October 2009

Contents

Module Integration - Thermoinduction

II09 thermo transition.jpg

Overview

When sufficient protective coating has been made, the temperature of the system is raised to 42°C. This activates the thermosensitive promoter, consequently triggering Module 3.

Rationale

II09 capsule penetration2.jpg

After encapsulation, it becomes more difficult for normal chemical induction to penetrate the outer protective coating. To tackle this problem, heat induction is used. Heat induction is, in addition, a commonly used and highly reproducible induction method in industrial scale manufacturing processes.

The thermosensitive cI promoter is chosen as it is widely cited in literature for efficient thermoinduction of systems [1], and has been proven to work well in commonly available plasmids. [http://partsregistry.org/Part:BBa_K098995 BBa_K098995], in particular, is the only construct for the thermosensitive cI system in the registry and has already been characterised previously.

The system

Ii09 thermo2.jpg

The lambda promoter ([http://partsregistry.org/wiki/index.php?title=Part:BBa_R0051 R0051]) is strongly repressed at 28 degrees by the cI repressor([http://partsregistry.org/wiki/index.php?title=Part:BBa_K098997 K098997]). Therefore, at 28 degrees, the thermoinducible system has no activity.

However, this cI repressor is unique in that it is temperature-sensitive, and will readily lose its functional structure as the temperature increases. Therefore, when the temperature is raised to 42°C, the lambda promoter is no longer repressed and can trigger Module 3.

  About the thermoinduction system

Characterisation of existing biobrick

The thermoinducible construct ([http://partsregistry.org/Part:BBa_K098995 BBa_K098995]), an existing biobrick, is characterised by ligating it to GFP. The cells are grown at the low temperature of 28°C where the promoter is inactive. The temperature is then shifted up to 42°C. The GFP fluorescence is monitored throughout as an indicator of promoter activity.
II09 HVD GFP MAIN.png

The GFP fluorescence is shown to be at baseline when cells are grown at 28°C. However, when the cells undergo a temperature shift to 42°C, there is an almost immediate increase in GFP fluorescence.

This shows that the activity of the lambda promoter does increase when the temperature is shifted up, so the thermoinducible construct ([http://partsregistry.org/Part:BBa_K098995 BBa_K098995]) does become activated by higher temperatures.


  About our wet lab results


References

[1] Wolfgang Jechlingera*, Michael P Szostaka 1 , Angela Wittea, Werner Lubitza (1999) Altered temperature induction sensitivity of the lambda pR/cI857 system for controlled gene E expression in Escherichia coli. FEMS Microbiology Letters. 173(2), pp 347 - 352


Project Tour



Temporal control Contents

Chemoinduction
Autoinduction
Thermoinduction
Wet Lab
Modelling

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