Team:Imperial College London/Wetlab/Results/Colanicfl

From 2009.igem.org

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{{Imperial/09/TemplateTop}}
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=Effect of Ph on fluorescence output for cells with and without colanic acid=
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=Effect of pH on fluorescence output for cells with and without colanic acid=
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=Background=
=Background=
RcsB (biobrick [http://partsregistry.org/Part:BBa_K200000 BBa_K200000] is the gene responsible for generating a colanic acid capsule around our bacteria. Having a colanic acid capsule around them will protect them from being degraded by the high acidic nature of the stomach environment.   
RcsB (biobrick [http://partsregistry.org/Part:BBa_K200000 BBa_K200000] is the gene responsible for generating a colanic acid capsule around our bacteria. Having a colanic acid capsule around them will protect them from being degraded by the high acidic nature of the stomach environment.   
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==Colanic acid cells==
==Colanic acid cells==
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===Neutral Ph===
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===Neutral pH===
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We can see that in the presence of water, cells with colanic acid give out a fluorescence output around values of 350000 to 400000. Cells can survive without difficulty at this Ph so the output remains fairly constant. <br>
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We can see that in the presence of water, cells with colanic acid give out a fluorescence output around values of 350000 to 400000. Cells can survive without difficulty at this pH so the output remains fairly constant. <br>
[[Image:II09_colfig11.png]]<br>
[[Image:II09_colfig11.png]]<br>
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<b>Figure 2: Effect of neutral Ph on cells with colanic acid for 3 different wells<b>
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<b>Figure 2: Effect of neutral pH on cells with colanic acid for 3 different wells</b>
===pH - 3===
===pH - 3===
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When the Ph is increased, the fluorescence decreases after 70 minutes (Unlike what happens at a neutral pH).
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When the pH is decreased, the fluorescence decreases after 70 minutes (Unlike what happens at a neutral pH).
Overall, cells induced with colanic acid give out a higher fluorescence output than those that do not contain it. <br>
Overall, cells induced with colanic acid give out a higher fluorescence output than those that do not contain it. <br>
[[Image:II09_colfig2.png]]<br>
[[Image:II09_colfig2.png]]<br>
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==Cells with no colanic acid==
==Cells with no colanic acid==
===Neutral pH===
===Neutral pH===
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Overall, fluorescence outputs are lower in a neutral pH.
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Overall, fluorescence outputs are lower at a neutral pH in cells that are not treated with colanic acid. <br>
[[Image:II09_colfig3.png]]<br>
[[Image:II09_colfig3.png]]<br>
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===Ph = 3===
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===pH - 3===
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In figure 4, we can see that for non-colanic acid cells the fluorescence starts to decrease earlier than in colanic acid protected cells (around 60 minutes). Therefore, we can see that there is a protective advantage of inducing cells with colanic acid in the cell culture
[[Image:II09_colfig4.png]]<br>
[[Image:II09_colfig4.png]]<br>
=Conclusion=
=Conclusion=
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[[Image:II09_colanic.png]]
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[[Image:II09_colanic1.png]]<br>
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Treating cells with colanic acid provides a significant advantage to the cells. Fluorescence output of the constitutive promoter is <b>higher</b> in cells treated with colanic acid. Therefore, we can infer that colanic acid has a <b>protective effect</b> that could potentially isolate the polypeptide of interest we are synthesising from the harsh acidic environment of the stomach.<br>
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<br>
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{{Imperial/09/TemplateBottom}}

Latest revision as of 02:53, 22 October 2009

Contents

Effect of pH on fluorescence output for cells with and without colanic acid

Background

RcsB (biobrick [http://partsregistry.org/Part:BBa_K200000 BBa_K200000] is the gene responsible for generating a colanic acid capsule around our bacteria. Having a colanic acid capsule around them will protect them from being degraded by the high acidic nature of the stomach environment.

Aim

Here, as proof of concept, we have designed a simple experiment that will show that colanic acid has a protective effect on our growing bacteria in acidic environments (simulating gastric conditions). The method is described below.

Experimental Method

In a multiple well plate, 2 different types of cell cultures were grown, both containing the [http://partsregistry.org/Part:BBa_I13522 BBa_I13522] construct, which is a constitutive promoter expressing GFP. The differences were:

  • Some cultures contained colanic acid (chemically induced by p-Fluoro-L-phenylalanine (FPA))
  • Some cultures did not contain colanic acid.

Growth rate of the cell cultures and levels of GFP expression were monitored over time, at different Ph values in order to decide if induction using colanic acid provides extra protection to the construct.

Result analysis: GFP expression

II09 bacteria.png
Figure1: Illustration. Our bacteria contain a constitutive promoter expressing GFP and we are testing the levels of fluorescence

Colanic acid cells

Neutral pH

We can see that in the presence of water, cells with colanic acid give out a fluorescence output around values of 350000 to 400000. Cells can survive without difficulty at this pH so the output remains fairly constant.
II09 colfig11.png
Figure 2: Effect of neutral pH on cells with colanic acid for 3 different wells

pH - 3

When the pH is decreased, the fluorescence decreases after 70 minutes (Unlike what happens at a neutral pH). Overall, cells induced with colanic acid give out a higher fluorescence output than those that do not contain it.
II09 colfig2.png

Cells with no colanic acid

Neutral pH

Overall, fluorescence outputs are lower at a neutral pH in cells that are not treated with colanic acid.
II09 colfig3.png

pH - 3

In figure 4, we can see that for non-colanic acid cells the fluorescence starts to decrease earlier than in colanic acid protected cells (around 60 minutes). Therefore, we can see that there is a protective advantage of inducing cells with colanic acid in the cell culture II09 colfig4.png

Conclusion

II09 colanic1.png
Treating cells with colanic acid provides a significant advantage to the cells. Fluorescence output of the constitutive promoter is higher in cells treated with colanic acid. Therefore, we can infer that colanic acid has a protective effect that could potentially isolate the polypeptide of interest we are synthesising from the harsh acidic environment of the stomach.


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