Team:Virginia Commonwealth/Literature

From 2009.igem.org

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Revision as of 14:27, 6 June 2009

Below is a compilation of papers and articles relevant to iGEM, synthetic biology and metabolic pathway engineering.

Introductions

Frameworks

Foundations for engineering biology by Drew Endy
Idempotent Vector Design for Standard Assembly of Biobricks by Tom Knight
Refinement and standardization of synthetic biological parts and devices
Measuring the activity of BioBrick promoters using an in vivo reference standard
Engineering BioBrick vectors from BioBrick parts by Reshma Shetty et al.
Biology by design: reduction and synthesis of cellular components and behaviour by You et al.
Genetic parts to program bacteria by Chris Voigt
Toward scalable parts families for predictable design of biological circuits by Julius Lucks et al.
Systems biology as a foundation for genome-scale synthetic biology by B. Palsson et al.

Foundations

A synthetic oscillatory network of transcriptional regulators by Michael B. Elowitz and Stanislas Leibler
Construction of a genetic toggle switch in Escherichia coli by James J. Collins et al.

Applications

Artemisinin project

Production of isoprenoid pharmaceuticals by engineered microbes by Jay Keasling et al.
Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli by Jay Keasling et al.

Tumor-destroying bacteria project

Environmentally controlled invasion of cancer cells by engineered bacteria by Chris Voigt et al.

Implications

DNA synthesis and biological security
The promise and perils of synthetic biology by J. Tucker and R. Zilinskas

@@ Line 8: / Line 8: @@
 *[http://www.synbiosafe.eu/uploads///pdf/SciAm_BioFab_2006_06.pdf <font color="#000000">'''Engineering life: building a FAB for biology'''</font>]
 *[http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=04290608 <font color="#000000">'''The iGEM competition: building with biology'''</font>] by James Brown
+*[http://www.nature.com/nchembio/journal/v3/n9/full/nchembio0907-521.html <font color="#000000">'''Synthetic biology: lessons from the history of synthetic organic chemistry'''</font>]
 <br />
 ==Frameworks==
 *[http://www.nature.com/nature/journal/v438/n7067/abs/nature04342.html;jsessionid=3E7E09FF4E647671DF79F2A37BC3632F <font color="#000000">'''Foundations for engineering biology'''</font>] by Drew Endy
-*[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VS2-4TX12FT-1&_user=709070&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039639&_version=1&_urlVersion=0&_userid=709070&md5=9a7b6f98545b46524dd3e2b938d4c75e <font color="#000000">'''Toward scalable parts families for predictable design of biological circuits'''</font>] by Julius Lucks ''et al.''
+*[http://dspace.mit.edu/handle/1721.1/21168 <font color="#000000">'''Idempotent Vector Design for Standard Assembly of Biobricks'''</font>] by Tom Knight
 *[http://www.nature.com/nbt/journal/v26/n7/full/nbt1413.html <font color="#000000">'''Refinement and standardization of synthetic biological parts and devices'''</font>]
 *[http://www.jbioleng.org/content/3/1/4 <font color="#000000">'''Measuring the activity of BioBrick promoters using an in vivo reference standard'''</font>]
+*[http://www.jbioleng.org/content/2/1/5 <font color="#000000">'''Engineering BioBrick vectors from BioBrick parts'''</font>] by Reshma Shetty ''et al.''
 *[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17251159&ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum <font color="#000000">'''Biology by design: reduction and synthesis of cellular components and behaviour'''</font>] by You ''et al.''
 *[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KWTFBB-3&_user=709071&_coverDate=10%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=55327bdfbda5081b078808963c8a92b6 <font color="#000000">'''Genetic parts to program bacteria'''</font>] by Chris Voigt
+*[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VS2-4TX12FT-1&_user=709070&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039639&_version=1&_urlVersion=0&_userid=709070&md5=9a7b6f98545b46524dd3e2b938d4c75e <font color="#000000">'''Toward scalable parts families for predictable design of biological circuits'''</font>] by Julius Lucks ''et al.''
 *[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRV-4KPX8RY-1&_user=709071&_coverDate=10%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=7a316893fbee50cab2742cc3b6de73b4 <font color="#000000">'''Systems biology as a foundation for genome-scale synthetic biology'''</font>] by B. Palsson ''et al.''
 <br />
@@ Line 21: / Line 24: @@
 *[http://www.nature.com/nature/journal/v403/n6767/abs/403335a0.html <font color="#000000">'''A synthetic oscillatory network of transcriptional regulators'''</font>] by Michael B. Elowitz and Stanislas Leibler
 *[http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html <font color="#000000">'''Construction of a genetic toggle switch in ''Escherichia coli'''''</font>] by James J. Collins ''et al.''
-*[http://dspace.mit.edu/handle/1721.1/21168 <font color="#000000">'''Idempotent Vector Design for Standard Assembly of Biobricks'''</font>] by Tom Knight
-*[http://www.jbioleng.org/content/2/1/5 <font color="#000000">'''Engineering BioBrick vectors from BioBrick parts'''</font>] by Reshma Shetty ''et al.''
 <br />
 ==Applications==