Team:Slovenia/References

From 2009.igem.org



References


  • Bellingham C.M., Lillie M. A., Gosline J. M., Wright G. M., Starcher B. C., Nailey A. J., Woodhouse K. A., Keeley F. W. 2003. Recombinant human elastin polypeptides self-assemble into biomaterials with elastin-like properties. Biopolymers, 70, 4: 445-455
  • Brino L., Urzhumtsev A., Mousli M., Bronner C., Mitschler A., Oudet P., Moras D. 2000. Dimerization of Escherichia coli DNA-gyrase B Provides a Structural Mechanism for Activating the ATPase Catalytic Center. Journal of Biological Chemistry, 275, 13: 9468-9475
  • Bromley E. H. C., Channon K., Moutevelis E., Woolfson D. N., 2008. Peptide and protein building blocks for synthetic biology: From programming biomolecules to self-organised biomolecular systems. ASC Chemical Biology, 3 (1): 38-50
  • Bromley E.H., Sessions R.B., Thomson A.R., Woolfson D.N. 2009. Designed alpha-helical tectons for constructing multicomponent synthetic biological systems. Journal of the American Chemical Society, 131(3): 928-930
  • Calderone V., Mangani S., Viezzoli M., S. 2003. The evolutionary conserved trimeric structure of CutA1 proteins suggest a role in signal transduction. Journal of Biological Chemistry, 278: 45999-46006
  • Chen J.H., Seeman N.C. 1991. Synthesis from DNA of a molecule with the connectivity of a cube. Nature, 350: 631-633
  • Cochran D.A., Penel S., Doig A.J. 2001. Effect of the N1 residue on the stability of the alpha-helix for all 20 amino acids. Protein Science, 10: 463-470
  • Ehrbar M., Schoenmakers R., Christen E.H., Fussenegger M., Weber W. 2008. Drug-sensing hydrogels for the inducible release of biopharmaceuticals. Nature Materials, 7(10): 800-804
  • Fong J.H, Keating A.E., Singh M. 2004. Predicting specificity in bZIP coiled-coil protein interactions. Genome Biology, 5: R11
  • Gurnon D.G., Whitaker J.A., Oakley M.G. 2003. Design and characterization of a homodimeric antiparallel coiled coil. Journal of the American Chemical Society, 125: 7518-7519
  • Hagemann U.B., Mason J.M., Müller K.M., Arndt K.M. 2008. Selectional and mutational scope of peptides sequestering the Jun-Fos coiled-coil domain. Journal of Molecular Biology, 381:73-88
  • Harbury P.B., Zhang T., Peter S. Kim, Alber T. 1993. A Switch Between two-, three- and four-stranded Coiled Coils in GCN4 Leucine Zipper Mutants. Science, 262: 1401-1407
  • He Y., Ye T., Su M., Zhang C., Ribbe A.E., Jiang W., Mao C. 2008. Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra. Nature, 452: 198-202
  • Holmes T.C., de Lacalle S., Su X., Liu G., Rich A., Zhang S. 2000. Extensive neurite outgrowth and active synapse formation on self-assembling peptide scaffods. Proceedings of the National Academy of Science of the USA, 97(12): 6728-6733
  • Keeley F.W., Bellingham C.M., Woodhouse K.A. 2002. Elastin as a selforganizing biomaterial: use of recombinantly expressed human elastin polypeptides as a model for investigations of structure and self-assembly of elastin. Philosophical Transactions of the Royal Society of London Series B, Biological Sciences, 357: 185-189
  • Kosonen H. 2004. Functionalization of polymers with self-assembled nanostructures. Doctoral dissertation. Helsinki University of Technology, Department of Engineering Physics and Mathematics. Finland, Helsinki. 47pages
  • Lee J., Macosko C. W., Urry D. W. 2001. Elastomeric polypentapeptides cross-linked into matrixes and fibers. Biomacromolecules, 2, 1: 170-179
  • Kuliopulos A. 1994. Production, purification, and cleavage of tandem repeats of recombinant peptides. Journal of the American Chemical Society, 116, 4599 – 4607
  • Lu Y., Lui J. 2007. Smart nanomaterials inspired by biology: Dinamic assembly of error-free nanomaterials in response to multiple chemical and biological stimuli. Accounts of Chemical Research. 40, 5: 315-323
  • Mason J.M., Müller K.M., Arndt K.M. 2007. Considerations in the design and optimization of coiled-coil structures. Methods in Molecular Biology, 352: 35-70
  • Meier S., Güthe S., Kiefhaber T., Grzesiek S. 2004. Foldon, The Natural Trimerization Domain of T4 Fibritin, Dissociates into a Monomeric A-state Form containing a Stable β-Hairpin: Atomic Details of Trimer Dissociation and Local β-Hairpin Stability from Residual Dipolar Couplings. Journal of Molecular Biology, 344, 4: 1051-1069
  • Padilla J.E., Colovos C., Yeates T.O. 2001. Nanohedra: Using symmetry to design self assembling protein cages, layers, crystals, and filaments. Proceedings of the National Academy of Science of the USA, 98(5): 2217-2221
  • Penel S., Hughes E., Doig A.J. 1999. Side-chain structures in the first turn of the alpha-helix. Journal of Molecular Biology, 287:127-143
  • Sambrook J. Et al. 2001. Molecular cloning: a laboratory manual, 3rd ed., Cold Spring Harbor, N.Y., Cold Spring Harbor Laboratory Press
  • Schiebel T. 2005. Protein fibres as preformance proteins: new technologies and aplications. Current Opinion in Biotechnology, 16: 427-433
  • Stupp S. I., Donners J. J. J. M., Silva G. A., Behanna H. A., Anthony S. G. 2009. Self-assembling peptide amphiphiles and related methods for growth factor delivery. U.S. Patent, 7,544,661
  • Sun J.K., Penel S., Doig A.J. 2000. Determination of alpha-helix N1 energies after addition of N1, N2, and N3 preferences to helix/coil theory. Protein Science, 9:750-754
  • Sweeney B., Zhang T., Schwartz R. 2008. Exploring the parameter space of complex self-assembly through virus capsid models. Biophysical Journal, 94, 3: 772–783
  • Taylor C.M., Keating A.E. 2005. Orientation and oligomerization specificity of the Bcr coiled-coil oligomerization domain. Biochemistry, 44: 16246-16256
  • Urry D. W., Long B. A., Cox B. A., Ohnishi T., Mitchell L. W., Jacobs M. 1974. The synthetic polypentapeptide of elastin coacervates and forms filamentous aggregates. Biochimica et Biphysica Acta, 371, 2: 597-602
  • Zhang S. 2003. Fabrication of novel biomaterials through molecular self-assembly. Nature Biotechnology, 21, 10: 1171-1178
  • Zhao C., Yao J., Masuda H., Kishore R., Asakura T. 2003. Structural characterization and artificial fiber formation of Bombyx mori Silk fibroin in hexafluoro-iso-propanol solvent system. Biopolymers, 69: 253-259
  • Zhao H. F., Boyd J., Jolicoeur N., Shen S. H. 2003. A coumermycin/novobiocin-regulated gene expression system. Human Gene Therapy, 14,17: 1619-1629
  • Zorko M., Japelj B., Hafner Bratkovič I., Jerala R. 2009. Expression, purification and structural studies of a short antimicrobial peptide. Biochimica et Biophysica Acta, 1788: 314-323
  • DNA structures can provide frameworks for next-generation nanosystems. 2005. Nanorex, Inc. - Molecular engineering tools for nanoscale design and simulation. http://nanoengineer-1.com/content/#dna_structures_link (october 2009): 3 pages


  • Locations of visitors to this page