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Team:Newcastle/SBML
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TubularWorld (Talk | contribs) (New page: {{:Team:Newcastle/CSS}} {{:Team:Newcastle/Header}} {{:Team:Newcastle/Left}} = SBML = '''SBML''' is a language which stores and exchanges computer-based mathematical models. It is an open s...) |
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{{:Team:Newcastle/Left}} | {{:Team:Newcastle/Left}} | ||
= SBML = | = SBML = | ||
| + | [[Image:SBML.png|right]] | ||
| + | [[Image:Copasi.png|128px|right]] | ||
'''SBML''' is a language which stores and exchanges computer-based mathematical models. It is an open standard based on the XML markup language. For writing the models in SBML we used the COPASI program. | '''SBML''' is a language which stores and exchanges computer-based mathematical models. It is an open standard based on the XML markup language. For writing the models in SBML we used the COPASI program. | ||
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The following are models which we have developed using SBML: | The following are models which we have developed using SBML: | ||
* [[Team:Newcastle/SporulationTuning#Modelling|KinA Model]] | * [[Team:Newcastle/SporulationTuning#Modelling|KinA Model]] | ||
| + | * [[Team:Newcastle/Modelling/Degradation Degradation]] | ||
== External links == | == External links == | ||
| + | * [http://sbml.org SBML] | ||
* [http://www.copasi.org/tiki-index.php COPASI] | * [http://www.copasi.org/tiki-index.php COPASI] | ||
{{:Team:Newcastle/Footer}} | {{:Team:Newcastle/Footer}} | ||
{{:Team:Newcastle/Right}} | {{:Team:Newcastle/Right}} | ||
Latest revision as of 12:07, 21 October 2009
Project
Sub-projects
Wet Lab
Meetings
Planning
Links
Contents |
SBML
SBML is a language which stores and exchanges computer-based mathematical models. It is an open standard based on the XML markup language. For writing the models in SBML we used the COPASI program.
JSim
To bridge the gap between agent based models (Java) and cellular models (SBML), the Newcastle team are using a software product called JSim, developed by the University of Washington.
Models developed
The following are models which we have developed using SBML:
External links
- [http://sbml.org SBML]
- [http://www.copasi.org/tiki-index.php COPASI]
News
Events
- 20 – 21 June 2009 - Europe workshop (London)
- 23 – 24 June 2009 - UK iGEM meetup (Edinburgh)
- 23 October Practice Presentation (Newcastle)
- 23 October T-shirts are ready
- 27 October Practice Presentation (Sunderland)
- 27 October Poster is ready
- 30 October – 2 November 2009 - Jamboree (Boston)
Social Net
- Newcastle iGEM Twitter
- [http://www.facebook.com/home.php#/group.php?gid=131709337641 Newcastle on Facebook]
- [http://www.youtube.com/user/newcastle2009igem Newcastle Youtube Channel]
