"
Team:Cambridge/Project/VI02
From 2009.igem.org
(→Creating colours) |
MikeDavies (Talk | contribs) |
||
| (3 intermediate revisions not shown) | |||
| Line 4: | Line 4: | ||
<!-- This is for the top grey / blue links bar !--> | <!-- This is for the top grey / blue links bar !--> | ||
| - | {{Template: | + | {{Template:Cambridgetemplatetop2}} |
[https://2009.igem.org/Team:Cambridge/Project/VI01 Background] | [https://2009.igem.org/Team:Cambridge/Project/VI01 Background] | ||
[https://2009.igem.org/Team:Cambridge/Project/VI02 Design] | [https://2009.igem.org/Team:Cambridge/Project/VI02 Design] | ||
| Line 22: | Line 22: | ||
[[Image:Design sent to DNA 2.0.PNG]] | [[Image:Design sent to DNA 2.0.PNG]] | ||
| - | This will be held under a repressible promoter on the pJexpress cloning cassette from DNA2.0. We designed it to include restriction sites with complementary sticky ends around vioD and vioC. This allowed us to remove both genes easily to create more colours from the vio operon. | + | This will be held under a repressible promoter on the pJexpress cloning cassette from DNA2.0. We codon optimised the operon for both ''E. coli'' and ''B. subtilis'', and designed it to include restriction sites with complementary sticky ends around vioD and vioC. This allowed us to remove both genes easily to create more colours from the vio operon. |
===Creating colours=== | ===Creating colours=== | ||
| Line 30: | Line 30: | ||
:*BglII and BclI = removed vioD and produced a light green pigment | :*BglII and BclI = removed vioD and produced a light green pigment | ||
| - | With more time, we would have been able to use this system to create colour logic gates; where different inputs would create a mix of different coloured outputs. This is discussed further on the | + | With more time, we would have been able to use this system to create colour logic gates; where different inputs would create a mix of different coloured outputs. This is discussed further on the [https://2009.igem.org/Team:Cambridge/Future | Future] page, where we explore the different potentials and implications of our project. |
Both of these new pigments were entered into the registry, along with the whole violacein operon for the purple pigment. | Both of these new pigments were entered into the registry, along with the whole violacein operon for the purple pigment. | ||
Latest revision as of 01:19, 22 October 2009
Categories :
Project :
-
Overview
Sensitivity Tuner
--- Characterisation
--- Modelling
Colour Generators
--- Carotenoids (Orange/Red)
--- Melanin (Brown)
--- Violacein (Purple/Green)
The Future
Safety
Notebook :
Team Logistics :
Violacein Pigments
Design
The Vio operon had numerous forbidden restriction sites, far too many to remove by PCR. We thus decided to synthesize it. This allowes us too remove these restriction sites and optimize codon usage for E. coli, to create the following biobrick:
As DNA2.0 very generously agreed to synthesize the entire operon for us, we designed it to include all the five genes, each preceded by a ribosome binding site, and flanked by the prefix and suffix. The final plan for the inserted operon is shown below:
This will be held under a repressible promoter on the pJexpress cloning cassette from DNA2.0. We codon optimised the operon for both E. coli and B. subtilis, and designed it to include restriction sites with complementary sticky ends around vioD and vioC. This allowed us to remove both genes easily to create more colours from the vio operon.
Creating colours
Once the violacein biobrick arrived we expressed in in TOP10 E. coli to create the purple pigment. We then carried out two more digests to see if we could create further colours:
- BamHI and BglII = removed vioC and produced a dark green pigment
- BglII and BclI = removed vioD and produced a light green pigment
With more time, we would have been able to use this system to create colour logic gates; where different inputs would create a mix of different coloured outputs. This is discussed further on the | Future page, where we explore the different potentials and implications of our project.
Both of these new pigments were entered into the registry, along with the whole violacein operon for the purple pigment.
Biobrick Parts
| Registry Code | Type | Sequence Description / Notes | Length |
|---|---|---|---|
| Reporter | Violacein. Produces a purple pigment (violacein) from L-tyrosine. The operon contains five genes (VioA-E) each with their own ribosome binding sites. | 7346bp | |
| Reporter | Vio operon ABDE. Produces a dark green pigment from L-tyrosine. Formed from the vio operon biobrick (BBa_K274002) with the vioC gene removed by restriction digest with BamHI and BglII. This sequence contains four genes, vioA, vioB vioD and vioE, each preceded by their own ribosome binding site. | 6032bp | |
| Reporter | Vio operon ABCE. Produces a light green pigment from L-tyrosine. Formed from the vio operon biobrick (BBa_K274002) with the vioD gene removed by restriction digest with BglII and BclI. This sequence contains four genes, vioA, vioB vioC and vioE, each preceded by their own ribosome binding site. | 6200bp |
