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Team:Illinois/Protocols
From 2009.igem.org
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== '''Protocols''' == | == '''Protocols''' == | ||
| - | This page describes protocols or includes links to protocols used in our project. Recipes used are also listed in a separate section. Protocols are organized by category. | + | This page describes protocols or includes links to protocols used in our project. Recipes used are also listed in a separate section. Protocols are organized by category. They were collected from Open Wet Ware, our advisors, and labs around the University of Illinois campus. |
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== '''Standard''' == | == '''Standard''' == | ||
*[http://www.biochem.northwestern.edu/morimoto/research/Protocols/I.%20Prokaryotes/A.%20Bacteriology.pdf Bacterial Culture Basics (media/plate preparation, growth, streaking, and storage)] | *[http://www.biochem.northwestern.edu/morimoto/research/Protocols/I.%20Prokaryotes/A.%20Bacteriology.pdf Bacterial Culture Basics (media/plate preparation, growth, streaking, and storage)] | ||
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| + | *[[Preparing Cryo stocks]] | ||
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| + | *[http://www.stanford.edu/~teruel1/Protocols/pdf/Transformation%20Protocol%20Using%20Heat%20Shock.pdf Transformation by Heat Shock Protocol] | ||
*[http://www.methodbook.net/dna/agarogel.html Agarose Gel Electrophoresis Protocol] | *[http://www.methodbook.net/dna/agarogel.html Agarose Gel Electrophoresis Protocol] | ||
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| + | *[http://www.sigmaaldrich.com/life-science/custom-oligos/custom-dna/learning-center/annealing-oligos.html Annealing Oligonucleotides Protocol] | ||
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| + | *[http://www1.qiagen.com/Products/DnaCleanup/GelPcrSiCleanupSystems/QIAquickPCRPurificationKit.aspx?r=1745#Tabs=t2 PCR Cleanup Protocol (QIAquick PCR Purification Kit)] -- Click on "QIAquick Spin Handbook - English (PDF)" under the "Handbooks" header | ||
*[http://www.5prime.com/media/29661/perfectprep%20spin%20mini%20kit%20manual_5prime_1048299_072007.pdf Miniprep Protocol (PerfectPrep Spin Mini Kit)] | *[http://www.5prime.com/media/29661/perfectprep%20spin%20mini%20kit%20manual_5prime_1048299_072007.pdf Miniprep Protocol (PerfectPrep Spin Mini Kit)] | ||
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*[[BioBrick information]] | *[[BioBrick information]] | ||
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== '''sRNA Characterization''' == | == '''sRNA Characterization''' == | ||
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This protocol is used to characterize an E. coli small RNA and its ability to downregulate a reporter gene (GFP). The small RNA is cloned out of the E. coli chromosome and inserted into a high-copy number plasmid (pJU-334). The sRNA's target sequence is also cloned out of the E. coli chromosome and inserted into a low-copy number plasmid (pXG-10). Both plasmids are then transformed into E. coli Top10F' cells. Successful sRNA repression is indicated by a decreased level of fluorescence in the cells. | This protocol is used to characterize an E. coli small RNA and its ability to downregulate a reporter gene (GFP). The small RNA is cloned out of the E. coli chromosome and inserted into a high-copy number plasmid (pJU-334). The sRNA's target sequence is also cloned out of the E. coli chromosome and inserted into a low-copy number plasmid (pXG-10). Both plasmids are then transformed into E. coli Top10F' cells. Successful sRNA repression is indicated by a decreased level of fluorescence in the cells. | ||
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'''[[sRNA characterization procedure]]''' | '''[[sRNA characterization procedure]]''' | ||
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== '''Recipes''' == | == '''Recipes''' == | ||
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[[LB Plates]] | [[LB Plates]] | ||
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| - | + | [[TBE Buffer]] | |
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Latest revision as of 15:50, 10 August 2009
Protocols
This page describes protocols or includes links to protocols used in our project. Recipes used are also listed in a separate section. Protocols are organized by category. They were collected from Open Wet Ware, our advisors, and labs around the University of Illinois campus.
Standard
- [http://www.biochem.northwestern.edu/morimoto/research/Protocols/I.%20Prokaryotes/A.%20Bacteriology.pdf Bacterial Culture Basics (media/plate preparation, growth, streaking, and storage)]
- [http://www.stanford.edu/~teruel1/Protocols/pdf/Transformation%20Protocol%20Using%20Heat%20Shock.pdf Transformation by Heat Shock Protocol]
- [http://www.methodbook.net/dna/agarogel.html Agarose Gel Electrophoresis Protocol]
- [http://www.sigmaaldrich.com/life-science/custom-oligos/custom-dna/learning-center/annealing-oligos.html Annealing Oligonucleotides Protocol]
- [http://www1.qiagen.com/Products/DnaCleanup/GelPcrSiCleanupSystems/QIAquickPCRPurificationKit.aspx?r=1745#Tabs=t2 PCR Cleanup Protocol (QIAquick PCR Purification Kit)] -- Click on "QIAquick Spin Handbook - English (PDF)" under the "Handbooks" header
- [http://www.5prime.com/media/29661/perfectprep%20spin%20mini%20kit%20manual_5prime_1048299_072007.pdf Miniprep Protocol (PerfectPrep Spin Mini Kit)]
- [http://www.promega.com/tbs/tb374/tb374.pdf Miniprep Protocol (PureYield Plasmid Miniprep System)]
sRNA Characterization
Taken from: [http://www.springerlink.com.proxy2.library.uiuc.edu/content/h752r3415261357p/ A Green Fluorescent Protein (GFP)-Based Plasmid System to Study Post-Transcriptional Control of Gene Expression In Vivo]: Johannes H. Urban and Jörg Vogel, 2009
This protocol is used to characterize an E. coli small RNA and its ability to downregulate a reporter gene (GFP). The small RNA is cloned out of the E. coli chromosome and inserted into a high-copy number plasmid (pJU-334). The sRNA's target sequence is also cloned out of the E. coli chromosome and inserted into a low-copy number plasmid (pXG-10). Both plasmids are then transformed into E. coli Top10F' cells. Successful sRNA repression is indicated by a decreased level of fluorescence in the cells.
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