Team:Groningen/Literature
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{{Team:Groningen/Header}} | {{Team:Groningen/Header}} | ||
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+ | <div style="float:left" >{{linkedImage|GroningenPrevious.png|Team:Groningen/Glossary}}</div> | ||
+ | <div title="Arsie Says UP TO ACCUMULATION" style="float:right" >{{linkedImage|Next.JPG|Team:Groningen/Protocols}}</div> | ||
+ | [[Category:Team:Groningen]] | ||
+ | |||
+ | ==Literature== | ||
Buoyancy related literature: | Buoyancy related literature: | ||
- | *Buoyant density: [[Team:Groningen/Literature#Poole1977| | + | *Buoyant density: [[Team:Groningen/Literature#Poole1977|Poole 1977]], [[Team:Groningen/Literature#Bylund1991|Bylund 1991]], '''[[Team:Groningen/Literature#Baldwin1995|Baldwin 1995]]''' |
- | *Gas vesicles: [[Team:Groningen/Literature#Bowen1965| | + | *Gas vesicles: [[Team:Groningen/Literature#Bowen1965|Bowen 1965]], [[Team:Groningen/Literature#Walsby1979|Walsby 1979]], '''[[Team:Groningen/Literature#Walsby1994|Walsby 1994]]''', '''[[Team:Groningen/Literature#Li1998|Li 1998]]''', [[Team:Groningen/Literature#Sivertsen2008|Sivertsen 2008]], [[Team:Groningen/Literature#Holland2009|Holland 2009]] |
+ | |||
+ | Other methods of arsenic purification. | ||
+ | *General information about the subject:[[Team:Groningen/Literature#Frankenberger2001|Frankenberger 2001]],[[Team:Groningen/Literature#Stephan Hug|Stephan Hug]],[[Team:Groningen/Literature#Wlckramaslnghe2004|Wlckramaslnghe 2004]],[[Team:Groningen/Literature#Dong2008|Dong 2008]],'''[[Team:Groningen/Literature#EPA2000|EPA 2000]]''', | ||
+ | *Ion exchange and Membranes:[[Team:Groningen/Literature#Oehmen2006|Oehmen 2006]], | ||
+ | *Nanomaterials:[[Team:Groningen/Literature#Hristovski2007|Hristovski 2007]],[[Team:Groningen/Literature#Martinson2009|Martinson 2009]],[[Team:Groningen/Literature#Chang2009|Chang 2009]], | ||
+ | *Precipitative Processes:[[Team:Groningen/Literature#Raje2005|Raje 2005]], | ||
Our metal related literature by subject: | Our metal related literature by subject: | ||
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- | |'''[[Team:Groningen/Literature#Meng2004| | + | |'''[[Team:Groningen/Literature#Meng2004|Meng 2004]]''', [[Team:Groningen/Literature#Rosen2009|Rosen 2009]] |
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- | |'''[[Team:Groningen/Literature#Meng2004| | + | |'''[[Team:Groningen/Literature#Meng2004|Meng 2004]]''' |
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|- | |- | ||
!{{part|BBa_K190018|HmtA}} | !{{part|BBa_K190018|HmtA}} | ||
- | |[[Team:Groningen/Literature#Lewinson2009| | + | |[[Team:Groningen/Literature#Lewinson2009|Lewinson 2009]] |
- | |[[Team:Groningen/Literature#Lewinson2009| | + | |[[Team:Groningen/Literature#Lewinson2009|Lewinson 2009]] |
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- | |[[Team:Groningen/Literature#Tisa1989| | + | |[[Team:Groningen/Literature#Tisa1989|Tisa 1989]], [[Team:Groningen/Literature#Carlin1995|Carlin 1995]], |
- | [[Team:Groningen/Literature#Dey1995| | + | [[Team:Groningen/Literature#Dey1995|Dey 1995]] [[Team:Groningen/Literature#Rosen1996|Rosen 1996]], '''[[Team:Groningen/Literature#Meng2004|Meng 2004]]''', [[Team:Groningen/Literature#Summers2009|Summers 2009]] |
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- | |[[Team:Groningen/Literature#Tisa1989| | + | |[[Team:Groningen/Literature#Tisa1989|Tisa 1989]], [[Team:Groningen/Literature#Carlin1995|Carlin 1995]], [[Team:Groningen/Literature#Rosen1996|Rosen 1996]], '''[[Team:Groningen/Literature#Meng2004|Meng 2004]]''', [[Team:Groningen/Literature#Summers2009|Summers 2009]] |
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- | ||[[Team:Groningen/Literature#Carlin1995| | + | ||[[Team:Groningen/Literature#Carlin1995|Carlin 1995]], [[Team:Groningen/Literature#Rosen1996|Rosen 1996]], '''[[Team:Groningen/Literature#Chen1997|Chen 1997]]''', '''[[Team:Groningen/Literature#Kostal2004|Kostal 2004]]''', [[Team:Groningen/Literature#Rensing2005|Rensing 2005]], [[Team:Groningen/Literature#Summers2009|Summers 2009]] |
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- | ||[[Team:Groningen/Literature#Carlin1995| | + | ||[[Team:Groningen/Literature#Carlin1995|Carlin 1995]], [[Team:Groningen/Literature#Rosen1996|Rosen 1996]], [[Team:Groningen/Literature#Summers2009|Summers 2009]] |
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- | |[[Team:Groningen/Literature#Chen1997| | + | |[[Team:Groningen/Literature#Chen1997|Chen 1997]], [[Team:Groningen/Literature#Lin2007-1|Lin 2007-1/2]], [[Team:Groningen/Literature#Summers2009|Summers 2009]] |
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- | |[[Team:Groningen/Literature#Chen1997| | + | |[[Team:Groningen/Literature#Chen1997|Chen 1997]], [[Team:Groningen/Literature#Lin2007-1|Lin 2007-1/2]], [[Team:Groningen/Literature#Summers2009|Summers 2009]] |
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|- | |- | ||
!SmtA | !SmtA | ||
- | |[[Team:Groningen/Literature#Shi1992| | + | |[[Team:Groningen/Literature#Shi1992|Shi 1992]] |
- | |[[Team:Groningen/Literature#Shi1992| | + | |[[Team:Groningen/Literature#Shi1992|Shi 1992]], [[Team:Groningen/Literature#Turner1995|Turner 1995]], [[Team:Groningen/Literature#Robinson2001|Robinson 2001]], [[Team:Groningen/Literature#Blindauer2002|Blindauer 2002]] |
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- | |[[Team:Groningen/Literature#Shi1992| | + | |[[Team:Groningen/Literature#Shi1992|Shi 1992]] |
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- | |[[Team:Groningen/Literature#Shi1992| | + | |[[Team:Groningen/Literature#Shi1992|Shi 1992]] |
|- | |- | ||
!MymT | !MymT | ||
- | | | + | |[[Team:Groningen/Literature#Gold2008|Gold 2008]] |
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- | |[[Team:Groningen/Literature#Morris1999| | + | |[[Team:Groningen/Literature#Morris1999|Morris 1999]],[[Team:Groningen/Literature#Ngu2006|Ngu 2006]],[[Team:Groningen/Literature#Singh2008|Singh 2008]], [[Team:Groningen/Literature#Merrifield2004|Merrifield 2004]], [[Team:Groningen/Literature#Ngu2009|Ngu 2009]] |
- | |[[Team:Groningen/Literature#Deng2007| | + | |[[Team:Groningen/Literature#Deng2007|Deng 2007]] |
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|[[Team:Groningen/Literature#Chen1998|Chen1998]] | |[[Team:Groningen/Literature#Chen1998|Chen1998]] | ||
|- | |- | ||
!Unclassified | !Unclassified | ||
- | |[[Team:Groningen/Literature#Brady1994| | + | |[[Team:Groningen/Literature#Brady1994|Brady 1994]] |
- | |[[Team:Groningen/Literature#Chang1998| | + | |[[Team:Groningen/Literature#Chang1998|Chang 1998]], [[Team:Groningen/Literature#Blindauer2001|Blindauer 2001]], [[Team:Groningen/Literature#Kao2008|Kao 2008]] |
| | | | ||
- | |[[Team:Groningen/Literature#Brady1994| | + | |[[Team:Groningen/Literature#Brady1994|Brady 1994]], [[Team:Groningen/Literature#Chang1998|Chang 1998]], |
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- | |[[Team:Groningen/Literature#Deng2008| | + | |[[Team:Groningen/Literature#Deng2008|Deng 2008]] |
|- | |- | ||
!rowspan="1" |Promoters | !rowspan="1" |Promoters | ||
! | ! | ||
- | |[[Team:Groningen/Literature#Mills1994 | | + | |[[Team:Groningen/Literature#Mills1994|Mills 1994 ]], [[Team:Groningen/Literature#Khunajakr1999 |Khunajakr 1999]], [[Team:Groningen/Literature#Liu2004|Liu 2004]], [[Team:Groningen/Literature#Moore2005|Moore 2005]], [[Team:Groningen/Literature#Ettema2006 |Ettema2006 ]], [[Team:Groningen/Literature#Liu2006|Liu 2006]], [[Team:Groningen/Literature#Liu2008|Liu 2008]], [[Team:Groningen/Literature#Catini2008|Catini 2008]], [[Team:Groningen/Literature#Nawapan2009|Nawapan 2009]] |
- | |[[Team:Groningen/Literature#Thelwell1998| | + | |[[Team:Groningen/Literature#Thelwell1998|Thelwell 1998]], [[Team:Groningen/Literature#Liu2004|Liu 2004]], [[Team:Groningen/Literature#Moore2005|Moore2005]], [[Team:Groningen/Literature#Hirose2006 |Hirose 2006]], [[Team:Groningen/Literature#Kloosterman2008|Kloosterman 2008]] |
- | |[[Team:Groningen/Literature#Summers2009 | | + | |[[Team:Groningen/Literature#Summers2009 |Summers 2009]] |
- | |[[Team:Groningen/Literature#Liu2004| | + | |[[Team:Groningen/Literature#Liu2004|Liu 2004]], [[Team:Groningen/Literature#Moore2005|Moore 2005]] |
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|} | |} | ||
- | ; | + | ;Alon 2007 {{anchor|Alon2007}} |
:{{star}} Uri Alon (2007). ''Introduction to systems biology: design principles of biological circuits'' Chapman & Hall/CRC. ISBN 978-1-58488-642-6 | :{{star}} Uri Alon (2007). ''Introduction to systems biology: design principles of biological circuits'' Chapman & Hall/CRC. ISBN 978-1-58488-642-6 | ||
- | ; | + | ;Baldwin 1995 {{anchor|Baldwin1995}} |
:W.W. Baldwin, Richard Myer, Nicole Powell, ''et al'' (August 1995). "[http://www.springerlink.com/content/nu1lkduf3w89fmd8 Buoyant density of Escherichia coli is determined solely by the osmolarity of the culture medium]". ''Archives of Microbiology'' '''164(2)''': 155-157 | :W.W. Baldwin, Richard Myer, Nicole Powell, ''et al'' (August 1995). "[http://www.springerlink.com/content/nu1lkduf3w89fmd8 Buoyant density of Escherichia coli is determined solely by the osmolarity of the culture medium]". ''Archives of Microbiology'' '''164(2)''': 155-157 | ||
- | ; | + | ;Beltramini 1981 {{anchor| Beltramini1981}} |
+ | :M. Beltramini and K. Lerch (1981). "[http://www.ncbi.nlm.nih.gov/pubmed/6453726 Luminescence Properties of ''Neurospora'' Copper Metallothionein]". ''FEBS Letters'' '''127(2)''': 201-203 | ||
+ | |||
+ | ;Beyer 2004 {{anchor|Beyer2004}} | ||
:Andreas Beyer, Jens Hollunder, Heinz-Peter Nasheuer and Thomas Wilhelm (August 2004). "[http://dx.doi.org/10.1074/mcp.M400099-MCP200 Post-transcriptional Expression Regulation in the Yeast Saccharomyces cerevisiae on a Genomic Scale]". ''Molecular & Cellular Proteomics'' '''3''': 1083-1092 | :Andreas Beyer, Jens Hollunder, Heinz-Peter Nasheuer and Thomas Wilhelm (August 2004). "[http://dx.doi.org/10.1074/mcp.M400099-MCP200 Post-transcriptional Expression Regulation in the Yeast Saccharomyces cerevisiae on a Genomic Scale]". ''Molecular & Cellular Proteomics'' '''3''': 1083-1092 | ||
- | ; | + | ;Bhutkar, A2005{{anchor|Bhutkar, A2005}} |
+ | :Bhutkar, A(2005). '[http://www.ncbi.nlm.nih.gov/pubmed/16538811?dopt=Abstract Synthetic Biology: Navigating the Challenges Ahead]".''The journal of Biolaw and Business. '' '''2(8)''': | ||
+ | |||
+ | ;Blancato 2006 {{anchor|Blancato2006}} | ||
:Blancato VS, Magni C, Lolkema JS. (October 2006). "[http://dx.doi.org/doi:10.1016/j.jmb.2009.02.015 Functional characterization and Me ion specificity of a Ca-citrate transporter from Enterococcus faecalis]". ''FEBS journal'' '''273(22)''': 5121-5130 | :Blancato VS, Magni C, Lolkema JS. (October 2006). "[http://dx.doi.org/doi:10.1016/j.jmb.2009.02.015 Functional characterization and Me ion specificity of a Ca-citrate transporter from Enterococcus faecalis]". ''FEBS journal'' '''273(22)''': 5121-5130 | ||
- | ; | + | ;Blindauer 2002 {{anchor|Blindauer2002}} |
- | + | ||
- | + | ||
- | + | ||
:Claudia A. Blindauer, Mark D. Harrison, Andrea K. Robinson, ''et al'' (2002). "[http://dx.doi.org/10.1046/j.1365-2958.2002.03109.x Multiple bacteria encode metallothioneins and SmtA-like zinc fingers]". ''Molecular Microbiology'' '''45(5)''': 1421-1432 | :Claudia A. Blindauer, Mark D. Harrison, Andrea K. Robinson, ''et al'' (2002). "[http://dx.doi.org/10.1046/j.1365-2958.2002.03109.x Multiple bacteria encode metallothioneins and SmtA-like zinc fingers]". ''Molecular Microbiology'' '''45(5)''': 1421-1432 | ||
- | ; | + | ;Blindauer 2001 {{anchor|Blindauer2001}} |
:Blindauer CA, Harrison MD, ''et al'' (2001). "[http://www.ncbi.nlm.nih.gov/pubmed/11493688 A metallothionein containing a zinc finger within a four-metal cluster protects a bacterium from zinc toxicity.]". '' Proc Natl Acad Sci USA. '' '''98(17)''': ):9593-9598 | :Blindauer CA, Harrison MD, ''et al'' (2001). "[http://www.ncbi.nlm.nih.gov/pubmed/11493688 A metallothionein containing a zinc finger within a four-metal cluster protects a bacterium from zinc toxicity.]". '' Proc Natl Acad Sci USA. '' '''98(17)''': ):9593-9598 | ||
- | ; | + | ;Bowen 1965 {{anchor|Bowen1965}} |
+ | :C.C. Bowen and T.E. Jensen ( March 1965). "[http://dx.doi.org/10.1126/science.147.3664.1460 Blue-Green Algae: Fine Structure of the Gas Vacuoles]". ''Science '' '''147(3664)''': 1460 - 1462 | ||
+ | |||
+ | ;Busenlehner 2003 {{anchor|Busenlehner2003}} | ||
:Busenlehner L.S., Pennella M.A. & Giedroc D.P., (June 2003) "[http://dx.doi.org/10.1155/2006/837139 The SmtB/ArsR family of metalloregulatory transcriptional repressors: structural insights into prokaryotic metal resistance]". ''FEMS Microbiology Reviews, '''2003''', 27, 131-143. | :Busenlehner L.S., Pennella M.A. & Giedroc D.P., (June 2003) "[http://dx.doi.org/10.1155/2006/837139 The SmtB/ArsR family of metalloregulatory transcriptional repressors: structural insights into prokaryotic metal resistance]". ''FEMS Microbiology Reviews, '''2003''', 27, 131-143. | ||
- | ; | + | ;Brady 1994 {{anchor|Brady1994}} |
:Brady D, Rose PD, Duncan JR. (1994). "[http://www.ncbi.nlm.nih.gov/pubmed/18618649 The use of hollow fiber cross-flow microfiltration in bioaccumulation and continuous removal of heavy metals from solution by Saccharomyces cerevisiae.]". '' Biotechnol Bioeng. '' '''44(11)''':1362-1366 | :Brady D, Rose PD, Duncan JR. (1994). "[http://www.ncbi.nlm.nih.gov/pubmed/18618649 The use of hollow fiber cross-flow microfiltration in bioaccumulation and continuous removal of heavy metals from solution by Saccharomyces cerevisiae.]". '' Biotechnol Bioeng. '' '''44(11)''':1362-1366 | ||
- | ; | + | ;Bylund 1991 {{anchor|Bylund1991}} |
:J.E. Bylund, M.A. Haines, K. Walsh, ''et al'' (September 1991). "[http://jb.asm.org/cgi/content/abstract/173/17/5396 Buoyant density studies of several mecillinam-resistant and division mutants of Escherichia coli]". ''Journal of Bacteriology'' '''173(17):''' 5396-5402 | :J.E. Bylund, M.A. Haines, K. Walsh, ''et al'' (September 1991). "[http://jb.asm.org/cgi/content/abstract/173/17/5396 Buoyant density studies of several mecillinam-resistant and division mutants of Escherichia coli]". ''Journal of Bacteriology'' '''173(17):''' 5396-5402 | ||
- | ; | + | ;Cadosch 2008 {{anchor|Cadosch2008}} |
:Cadosch D, Meagher J, Gautschi OP, Filgueira L. (December 2008). "[http://www.ncbi.nlm.nih.gov/pubmed/19133293 Uptake and intracellular distribution of various metal ions in human monocyte-derived dendritic cells detected by Newport Green DCF diacetate ester]". '' Journal Neurosci Methods.'' '''178(1)''':182-187 | :Cadosch D, Meagher J, Gautschi OP, Filgueira L. (December 2008). "[http://www.ncbi.nlm.nih.gov/pubmed/19133293 Uptake and intracellular distribution of various metal ions in human monocyte-derived dendritic cells detected by Newport Green DCF diacetate ester]". '' Journal Neurosci Methods.'' '''178(1)''':182-187 | ||
- | ; | + | ;Catini 2008 {{anchor|Catini2008}} |
:Cantini F., Banci L. & Solioz M., (October 2008) "[http://dx.doi.org/10.1042/BJ20081713 The copper-responsive repressor CopR of Lactococcus lactis is a ‘winged helix’ protein]". ''Biochem. J., '''2009''', 417, 493–499. | :Cantini F., Banci L. & Solioz M., (October 2008) "[http://dx.doi.org/10.1042/BJ20081713 The copper-responsive repressor CopR of Lactococcus lactis is a ‘winged helix’ protein]". ''Biochem. J., '''2009''', 417, 493–499. | ||
- | ; | + | ;Carlin 1995 {{anchor|Carlin1995}} |
:Arthur Carlin, Weiping Shi, Saibal Dey and Barry P. Rosen (February 1995). "[http://www.ncbi.nlm.nih.gov/pubmed/7860609 The ars Operon of Escherichia coli Confers Arsenical and Antimonial Resistance]". ''Journal of Bacteriology'' '''177(4)''': 981-986 | :Arthur Carlin, Weiping Shi, Saibal Dey and Barry P. Rosen (February 1995). "[http://www.ncbi.nlm.nih.gov/pubmed/7860609 The ars Operon of Escherichia coli Confers Arsenical and Antimonial Resistance]". ''Journal of Bacteriology'' '''177(4)''': 981-986 | ||
- | ; | + | ;Chen 1997 {{anchor|Chen1997}} |
:{{star}} Yanxiang Chen and Barry P. Rosen (May 1997). "[http://www.ncbi.nlm.nih.gov/pubmed/9162059 Metalloregulatory Properties of the ArsD Repressor]". ''The Journal of Biological Chemistry'' '''272(22)''': 14257-14262 | :{{star}} Yanxiang Chen and Barry P. Rosen (May 1997). "[http://www.ncbi.nlm.nih.gov/pubmed/9162059 Metalloregulatory Properties of the ArsD Repressor]". ''The Journal of Biological Chemistry'' '''272(22)''': 14257-14262 | ||
- | ; | + | ;Chen 1997-2 {{anchor|Chen1997-2}} |
:Chen S, Wilson DB. (1997). "[http://www.ncbi.nlm.nih.gov/pubmed/9342882 Genetic engineering of bacteria and their potential for Hg2+ bioremediation] ". ''Biodegradation'' '''8(2)''': 97-103 | :Chen S, Wilson DB. (1997). "[http://www.ncbi.nlm.nih.gov/pubmed/9342882 Genetic engineering of bacteria and their potential for Hg2+ bioremediation] ". ''Biodegradation'' '''8(2)''': 97-103 | ||
- | ; | + | ;Chen 1998 {{anchor|Chen1998}} |
:Chen S, Kim E, Shuler ML, Wilson DB. (1998). "[http://www.ncbi.nlm.nih.gov/pubmed/9758654 Hg2+ removal by genetically engineered Escherichia coli in a hollow fiber bioreactor]". ''Biotechnol Prog. '' '''14(5)''':667-671 | :Chen S, Kim E, Shuler ML, Wilson DB. (1998). "[http://www.ncbi.nlm.nih.gov/pubmed/9758654 Hg2+ removal by genetically engineered Escherichia coli in a hollow fiber bioreactor]". ''Biotechnol Prog. '' '''14(5)''':667-671 | ||
- | ; | + | ;Chen 2008 {{anchor|Chen2008}} |
:Chen P.R. & He C., (March 2008) "[http://dx.doi.org/10.1016/j.cbpa.2007.12.010 Selective recognition of metal ions by metalloregulatory proteins'', ''Current Opinion in Chemical Biology]". '''2008''', 12, 214–221. | :Chen P.R. & He C., (March 2008) "[http://dx.doi.org/10.1016/j.cbpa.2007.12.010 Selective recognition of metal ions by metalloregulatory proteins'', ''Current Opinion in Chemical Biology]". '''2008''', 12, 214–221. | ||
- | ; | + | ;Chang 1998 {{anchor|Chang1998}} |
:Chang CC, Liao WF, Huang PC. (1998). "[http://www.ncbi.nlm.nih.gov/pubmed/9579658 Cysteine contributions to metal binding preference for Zn/Cd in the beta-domain of metallothionein]". '' Protein Eng.'' '''11(1)''':42-46 | :Chang CC, Liao WF, Huang PC. (1998). "[http://www.ncbi.nlm.nih.gov/pubmed/9579658 Cysteine contributions to metal binding preference for Zn/Cd in the beta-domain of metallothionein]". '' Protein Eng.'' '''11(1)''':42-46 | ||
- | ; | + | ;Chang 2009 {{anchor|Chang2009}} |
+ | :Yoon-Young Chang, Seung-Mok Lee, Jae-Kyu Yang, (August 2009). "[http://dx.doi.org/10.1016/j.colsurfa.2009.06.017 Removal of As(III) and As(V) by natural and synthetic metal oxides]". ''Colloids and Surfaces A: Physicochemical and Engineering Aspects'' '''346(1-3)''': 202-207 | ||
+ | |||
+ | ;Chopra, PK, A2006{{anchor|Chopra, PK, A2006}} | ||
+ | :Chopra, PK, A(2006). "[http://www.ncbi.nlm.nih.gov/pubmed/17274769?dopt=Abstract Engineering life through Synthetic Biology]".''In silico Biology. '' '''0038(6)''': | ||
+ | |||
+ | ;Cleland, CE, et al.2002{{anchor|Cleland, CE, et al.2002}} | ||
+ | :Cleland, CE, et al.(2002). "[http://www.springerlink.com/content/hl14401v6rq7010r/ Defining 'life']".''Origins of Life and Evolution of the Biosphere. '' '''4(32)''':387-393 | ||
+ | |||
+ | ;Deng 2003 {{anchor|Deng2003}} | ||
:Deng X, Li QB, Lu YH, Sun DH, Huang YL, Chen XR. (2003). "[http://www.ncbi.nlm.nih.gov/pubmed/12727263 Bioaccumulation of nickel from aqueous solutions by genetically engineered Escherichia coli.]". '' Water Res.'' '''37(10)''':2505-2511 | :Deng X, Li QB, Lu YH, Sun DH, Huang YL, Chen XR. (2003). "[http://www.ncbi.nlm.nih.gov/pubmed/12727263 Bioaccumulation of nickel from aqueous solutions by genetically engineered Escherichia coli.]". '' Water Res.'' '''37(10)''':2505-2511 | ||
- | ; | + | ;Deng 2007 {{anchor|Deng2007}} |
:Deng X, Yi XE, Liu G. (2007). "[http://www.ncbi.nlm.nih.gov/pubmed/16890348 Cadmium removal from aqueous solution by gene-modified Escherichia coli JM109]". '' Journal Hazard Mater. '' '''139(2)''':340-344 | :Deng X, Yi XE, Liu G. (2007). "[http://www.ncbi.nlm.nih.gov/pubmed/16890348 Cadmium removal from aqueous solution by gene-modified Escherichia coli JM109]". '' Journal Hazard Mater. '' '''139(2)''':340-344 | ||
- | ; | + | ;Deng 2008 {{anchor|Deng2008}} |
:Deng X, Hu ZL, Yi XE. (May 2008). "[http://www.ncbi.nlm.nih.gov/pubmed/17920767 Continuous treatment process of mercury removal from aqueous solution by growing recombinant E. coli cells and modeling study]". '' Journal Hazard Mater. '' '''153(1-2)''':487-492 | :Deng X, Hu ZL, Yi XE. (May 2008). "[http://www.ncbi.nlm.nih.gov/pubmed/17920767 Continuous treatment process of mercury removal from aqueous solution by growing recombinant E. coli cells and modeling study]". '' Journal Hazard Mater. '' '''153(1-2)''':487-492 | ||
- | ; | + | ;Deplazes, A2009{{anchor|Deplazes, A2009}} |
+ | :Deplazes, A(2009). "[http://www.ncbi.nlm.nih.gov/pubmed/19415076?dopt=Abstract Piecing together a puzzle An exposition of synthetic biology]".''Embo Reports. '' '''5(10)''':428-432 | ||
+ | |||
+ | ;Dey 1995 {{anchor|Dey1995}} | ||
:Saibal Dey, Barry P. Rosen (1995). "[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=176602 Dual Mode of Energy Coupling by the Oxyanion Translocating ArsB Protein]". ''JOURNAL OF BACTERIOLOGY'' '''177(2)''': 385–389 | :Saibal Dey, Barry P. Rosen (1995). "[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=176602 Dual Mode of Energy Coupling by the Oxyanion Translocating ArsB Protein]". ''JOURNAL OF BACTERIOLOGY'' '''177(2)''': 385–389 | ||
- | ; | + | ;Dong 2008 {{anchor|Dong2008}} |
+ | :Dong, Liangjie (December 2008). "[http://www.freepatentsonline.com/y2008/0311288.html Methods and Compositions for Removal of Arsenic and Heavy Metals From Water]". ''United States Patent Application 20080311288 Kind Code:A1 | ||
+ | '' | ||
+ | |||
+ | ;EPA 2000 {{anchor|EPA2000}} | ||
+ | :Environmental Protection Agency (December 2000). "[http://www.epa.gov/safewater Technologies and Costs for Removal of Arsenic from Drinking Water]". ''EPA 815-R-00-028'' | ||
+ | |||
+ | ;Ettema 2006 {{anchor|Ettema2006}} | ||
:Thijs J. G. Ettema, Arie B. Brinkman ''et al'' (2006). "[http://dx.doi.org/10.1099/mic.0.28724-0 Molecular characterization of a conserved archaeal copper resistance (cop) gene cluster and its copper-responsive regulator in Sulfolobus solfataricus P2]". ''Microbiology '''152''': 1969-1979 | :Thijs J. G. Ettema, Arie B. Brinkman ''et al'' (2006). "[http://dx.doi.org/10.1099/mic.0.28724-0 Molecular characterization of a conserved archaeal copper resistance (cop) gene cluster and its copper-responsive regulator in Sulfolobus solfataricus P2]". ''Microbiology '''152''': 1969-1979 | ||
- | ; | + | ;Fowler 1987 {{anchor|Fowler1987}} |
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+ | |||
+ | ;Rawlings 1994 {{anchor| Rawlings1994}} | ||
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+ | |||
+ | ;Rensing 2000 {{anchor|Rensing2000}} | ||
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+ | |||
+ | ;Rensing 2003 {{anchor|Rensing2003}} | ||
+ | :Rensing C, Grass G. (June 2003). "[http://www.ncbi.nlm.nih.gov/pubmed/12829268?ordinalpos=10&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum Escherichia coli mechanisms of copper homeostasis in a changing environment.]". ''FEMS Microbiol Rev.'' '''27(2-3)''': 197-213 | ||
+ | |||
+ | ;Rensing 2005 {{anchor|Rensing2005}} | ||
:Christopher Rensing (June 2005). "[http://dx.doi.org/10.1128/JB.187.12.3909-3912.2005 Form and Function in Metal-Dependent Transcriptional Regulation: Dawn of the Enlightenment]". ''Journal of Bacteriology'' '''187(12)''': 3909–3912 | :Christopher Rensing (June 2005). "[http://dx.doi.org/10.1128/JB.187.12.3909-3912.2005 Form and Function in Metal-Dependent Transcriptional Regulation: Dawn of the Enlightenment]". ''Journal of Bacteriology'' '''187(12)''': 3909–3912 | ||
- | ; | + | ;Robinson 2001 {{anchor|Robinson2001}} |
:Nigel J. Robinson, Simon K. Whitehall and Jennifer S. Cavet (2001). "[http://www.ncbi.nlm.nih.gov/pubmed/11407113 Microbial Metallothioneins]". ''Advances in Microbial Physiology'' '''44''': 183-213 | :Nigel J. Robinson, Simon K. Whitehall and Jennifer S. Cavet (2001). "[http://www.ncbi.nlm.nih.gov/pubmed/11407113 Microbial Metallothioneins]". ''Advances in Microbial Physiology'' '''44''': 183-213 | ||
- | ; | + | ;Rosen 1996 {{anchor|Rosen1996}} |
:Barry P. Rosen (August 1996). "[http://dx.doi.org/10.1007/s007750050053 Bacterial resistance to heavy metals and metalloids]". ''Journal of Biological Inorganic Chemistry'' '''1(4)''': 273-277 | :Barry P. Rosen (August 1996). "[http://dx.doi.org/10.1007/s007750050053 Bacterial resistance to heavy metals and metalloids]". ''Journal of Biological Inorganic Chemistry'' '''1(4)''': 273-277 | ||
- | ; | + | ;Rosen, BR, et al.2009{{anchor|Rosen, BR, et al.2009}}{{anchor|Rosen2009}} |
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- | ; | + | ;Salkind1991{{anchor|Salkind1991}} |
+ | :Salkind, N.J. (1991). '''Exploring Research'''ISBN 0-02-405283-3; BF76.5.S24 New York Macmillan Publishing Company 361 + xxii | ||
+ | |||
+ | ;Samuel, GN, et al.2009{{anchor|Samuel, GN, et al.2009}} | ||
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+ | |||
+ | ;Schmidt, M 2008 {{anchor|Schmidt2008}} | ||
+ | :Schmidt, M (2008). "[http://dx.doi.org/10.1007/s11693-008-9018-z Diffusion of synthetic biology: a challenge to biosafety]", ''Syst Synth Biol.'' | ||
+ | |||
+ | ;Schwartz 2008 {{anchor|Schwartz2008}} | ||
:Russel Schwartz (2008). ''Biological modeling and simulation: a survey of practical models, algorithms, and numerical methods'' MIT Press. ISBN 978-0-262-19584-3 | :Russel Schwartz (2008). ''Biological modeling and simulation: a survey of practical models, algorithms, and numerical methods'' MIT Press. ISBN 978-0-262-19584-3 | ||
- | ; | + | ;Serrano, L2007{{anchor|Serrano, L2007}} |
+ | :Serrano, L(2007). "[http://www.ncbi.nlm.nih.gov/pubmed/18091727?dopt=Abstract Synthetic biology: promises and challenges]".''Molecular Systems Biology. '' 3)''': | ||
+ | |||
+ | ;Shi 1992 {{anchor|Shi1992}} | ||
:Jianguo Shi, William P. Lindsay, James W. Huckle (June 1992). "[http://dx.doi.org/10.1016/0014-5793(92)80509-F Cyanobacterial metallothionein gene expressed in Escherichia coli: Metal-binding properties of the expressed protein]". ''FEBS Letters'' '''303(2-3)''': 159-163 | :Jianguo Shi, William P. Lindsay, James W. Huckle (June 1992). "[http://dx.doi.org/10.1016/0014-5793(92)80509-F Cyanobacterial metallothionein gene expressed in Escherichia coli: Metal-binding properties of the expressed protein]". ''FEBS Letters'' '''303(2-3)''': 159-163 | ||
- | ; | + | ;Singh 1999 {{anchor|Singh1999}} |
+ | :Singh VK, Xiong A, Usgaard TR, Chakrabarti S, Deora R, Misra TK, Jayaswal RK. (July 1999). "[http://www.ncbi.nlm.nih.gov/pubmed/10411736?ordinalpos=10&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum ZntR is an autoregulatory protein and negatively regulates the chromosomal zinc resistance operon znt of Staphylococcus aureus.]". ''Molecular Microbiology'' '''33(1)''': 200-7 | ||
+ | |||
+ | ;Singh 2008 {{anchor|Singh2008}} | ||
:Shailendra Singh, Ashok Mulchandani, Wilfred Chen (February 2008). "[http://dx.doi.org/10.1128/AEM.02871-07 Highly Selective and Rapid Arsenic Removal by Metabolically Engineered Escherichia coli Cells Expressing Fucus vesiculosus Metallothionein]". ''MICROBIOLOGY'' '''74(9)''': 2924–2927 | :Shailendra Singh, Ashok Mulchandani, Wilfred Chen (February 2008). "[http://dx.doi.org/10.1128/AEM.02871-07 Highly Selective and Rapid Arsenic Removal by Metabolically Engineered Escherichia coli Cells Expressing Fucus vesiculosus Metallothionein]". ''MICROBIOLOGY'' '''74(9)''': 2924–2927 | ||
- | ; | + | ;Sivertsen 2008 {{anchor|Sivertsen2008}} |
:Astrid C. Sivertsen, Marvin J. Bayro, ''et al'' ( april 2008). "[http://dx.doi.org/doi:10.1016/j.jmb.2009.02.015 Solid-State NMR Evidence for Inequivalent GvpA Subunits in Gas Vesicles]". ''Journal of Molecular Biology'' '''387(4)''': 1032-1039 | :Astrid C. Sivertsen, Marvin J. Bayro, ''et al'' ( april 2008). "[http://dx.doi.org/doi:10.1016/j.jmb.2009.02.015 Solid-State NMR Evidence for Inequivalent GvpA Subunits in Gas Vesicles]". ''Journal of Molecular Biology'' '''387(4)''': 1032-1039 | ||
- | ; | + | ;Stephan Hug {{anchor|Stephan Hug}} |
+ | :Stephan Hug. "[http://www.eawag.ch/publications/eawagnews/www_en49/en49e_ihv_web.html Arsenic Contamination of Ground Water: Disastrous Consequences in Bangladesh]". ''EAWAG news'' '''49(e)''': 18-20 | ||
+ | |||
+ | ;Stephenson, JR, et al.1996 {{anchor|Stephenson, JR, et al.1996}}:Stephenson, JR, et al.(1996). "[http://dx.doi.org/10.1002 Release of genetically modified micro-organisms into the environment]".''Journal of Chemical Technology and Biotechnology. '' '''1(65)''':5-14 | ||
+ | |||
+ | ;Summers 2009 {{anchor|Summers2009}} | ||
:Anne O. Summers (April 2009). "[http://dx.doi.org/10.1016/j.mib.2009.02.003 Damage control: regulating defenses against toxic metals and metalloids]". ''Current Opinion in Microbiology'' '''12(2)''': 138-144 | :Anne O. Summers (April 2009). "[http://dx.doi.org/10.1016/j.mib.2009.02.003 Damage control: regulating defenses against toxic metals and metalloids]". ''Current Opinion in Microbiology'' '''12(2)''': 138-144 | ||
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+ | :Katsuhisa Suzukia, Norio Wakaob, Tetsuya Kimuraa, Kazuo Sakkaa and Kunio Ohmiya (February 1998). "[http://dx.doi.org/10.1016/S0922-338X(98)80016-0 Metalloregulatory properties of the ArsR and ArsD repressors of ''Acidiphilium multivorum'' AIU 301]". ''Journal of Fermentation and Bioengineering'' '''85(6)''': 623-626 | ||
+ | |||
+ | ;Thelwell 1998 {{anchor|Thelwell1998}} | ||
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- | ; | + | ;Tisa 1989 {{anchor|Tisa1989}} |
:Louis S. Tisa and Barry P. Rosen (January 1990). "[http://www.ncbi.nlm.nih.gov/pubmed/1688427 Molecular characterization of an anion pump. The ArsB protein is the membrane anchor for the ArsA protein]". ''The journal of biological chemistry'' '''265(1)''': 190-194 | :Louis S. Tisa and Barry P. Rosen (January 1990). "[http://www.ncbi.nlm.nih.gov/pubmed/1688427 Molecular characterization of an anion pump. The ArsB protein is the membrane anchor for the ArsA protein]". ''The journal of biological chemistry'' '''265(1)''': 190-194 | ||
- | ; | + | ;Turner 1995 {{anchor|Turner1995}} |
:Jennifer S. Turner, Nigel J. Robinson and Amit Gupta (March 1995). "[http://dx.doi.org/10.1007/BF01569937 Construction of Zn<sup>2+</sup>/Cd<sup>2+</sup>-tolerant cyanobacteria with a modified metallothionein divergon: Further analysis of the function and regulation of ''smt'']". ''Journal of Industrial Microbiology and Biotechnology'' '''14(3-4)''': 259-264 | :Jennifer S. Turner, Nigel J. Robinson and Amit Gupta (March 1995). "[http://dx.doi.org/10.1007/BF01569937 Construction of Zn<sup>2+</sup>/Cd<sup>2+</sup>-tolerant cyanobacteria with a modified metallothionein divergon: Further analysis of the function and regulation of ''smt'']". ''Journal of Industrial Microbiology and Biotechnology'' '''14(3-4)''': 259-264 | ||
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+ | |||
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+ | |||
+ | ;Xiong 1998 {{anchor|Xiong1998}} | ||
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+ | |||
+ | ;Xu 1996 {{anchor|Xu1996}} | ||
+ | :Chun Xu, Weiping Shi and Barry P. Rosen (February 1996). "[http://dx.doi.org/10.1074/jbc.271.5.2427 The Chromosomal ''arsR'' Gene of ''Escherichia coli'' Encodes a ''trans''-acting Metalloregulatory Protein]". ''The Journal of Biological Chemistry'' '''271(5)''': 2427-2432 | ||
+ | |||
+ | ;Yamamoto 2005 {{anchor|Yamamoto2005}} | ||
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+ | |||
+ | ;Zwart, SD, et al.2006{{anchor|Zwart, SD, et al.2006}}:Zwart, SD, et al.(2006). "[http://dx.doi.org/10.1007/s11948-006-0063-2 network approach for distinguishing ethical issues in research and development]".''Science and Engineering Ethics. '' '''4(12)''':663-684 | ||
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+ | |||
Miscellaneous: | Miscellaneous: |
Latest revision as of 23:47, 21 October 2009
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Literature
Buoyancy related literature:
- Buoyant density: Poole 1977, Bylund 1991, Baldwin 1995
- Gas vesicles: Bowen 1965, Walsby 1979, Walsby 1994, Li 1998, Sivertsen 2008, Holland 2009
Other methods of arsenic purification.
- General information about the subject:Frankenberger 2001,Stephan Hug,Wlckramaslnghe 2004,Dong 2008,EPA 2000,
- Ion exchange and Membranes:Oehmen 2006,
- Nanomaterials:Hristovski 2007,Martinson 2009,Chang 2009,
- Precipitative Processes:Raje 2005,
Our metal related literature by subject:
Cu | Zn | As | Cd | Sb | Hg | ||
---|---|---|---|---|---|---|---|
Importers | GlpF | Meng 2004, Rosen 2009 | Meng 2004 | ||||
[http://partsregistry.org/Part:BBa_K190018 HmtA] | Lewinson 2009 | Lewinson 2009 | |||||
Exporters | ArsB | Tisa 1989, Carlin 1995, | Tisa 1989, Carlin 1995, Rosen 1996, Meng 2004, Summers 2009 | ||||
Accumulators | ArsR | Carlin 1995, Rosen 1996, Chen 1997, Kostal 2004, Rensing 2005, Summers 2009 | Carlin 1995, Rosen 1996, Summers 2009 | ||||
ArsD | Chen 1997, Lin 2007-1/2, Summers 2009 | Chen 1997, Lin 2007-1/2, Summers 2009 | |||||
SmtA | Shi 1992 | Shi 1992, Turner 1995, Robinson 2001, Blindauer 2002 | Shi 1992 | Shi 1992 | |||
MymT | Gold 2008 | ||||||
MT | Morris 1999,Ngu 2006,Singh 2008, Merrifield 2004, Ngu 2009 | Deng 2007 | Chen1998 | ||||
Unclassified | Brady 1994 | Chang 1998, Blindauer 2001, Kao 2008 | Brady 1994, Chang 1998, | Deng 2008 | |||
Promoters | Mills 1994 , Khunajakr 1999, Liu 2004, Moore 2005, Ettema2006 , Liu 2006, Liu 2008, Catini 2008, Nawapan 2009 | Thelwell 1998, Liu 2004, Moore2005, Hirose 2006, Kloosterman 2008 | Summers 2009 | Liu 2004, Moore 2005 |
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- Gold 2008
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Miscellaneous:
- [http://ginkgobioworks.com/cgi/primer.cgi Primer design Bioworks]
- [http://openwetware.org/wiki/The_BioBricks_Foundation:Standards/Technical/Measurement Promotor measurement]
- [http://openwetware.org/wiki/Main_Page OpenWetWare]
- [http://www.hgsc.bcm.tmc.edu/projects/microbial/microbial-detail.xsp?project_id=105 E. coli DH10B genome] (with BLAST)